DC900074

Overview
NameDC900074
Unique NameDC900074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_BUCAI (3-phosphoshikimate 1-carboxyvinyltransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=aroA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.495e-28
Identity = 79/214 (36.92%), Postives = 110/214 (51.40%), Query Frame = 2
Query:   59 HEGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            H+ N+  +L+G  RM ERPIGDLV  L Q GA ++       PP+                     Q+             +  I I   L+S PY+++TL L++ FGV +EH DS++ F+I+G Q+YK+PG   +EGDASSASYF              G G  S+QGD++FA  LEKMGA   W +  +T T        RN L A+D++MN
Sbjct:  110 HKNNI--LLNGDDRMHERPIGDLVDALIQGGAVIEYKKNKGYPPICTKGGFLGGSIFLNGNISS--QFLTSLLISTPLALKDTTIFIKGNLVSKPYIDITLNLIKIFGVNIEH-DSYNVFYIKGKQQYKTPGKYTIEGDASSASYFLAAAAIKGGSIKVTGVGKKSIQGDIEFANILEKMGATIFWEDYSITCT--------RNKLNAIDLDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_BUCA5 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=aroA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.495e-28
Identity = 79/214 (36.92%), Postives = 110/214 (51.40%), Query Frame = 2
Query:   59 HEGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            H+ N+  +L+G  RM ERPIGDLV  L Q GA ++       PP+                     Q+             +  I I   L+S PY+++TL L++ FGV +EH DS++ F+I+G Q+YK+PG   +EGDASSASYF              G G  S+QGD++FA  LEKMGA   W +  +T T        RN L A+D++MN
Sbjct:  110 HKNNI--LLNGDDRMHERPIGDLVDALIQGGAVIEYKKNKGYPPICTKGGFLGGSIFLNGNISS--QFLTSLLISTPLALKDTTIFIKGNLVSKPYIDITLNLIKIFGVNIEH-DSYNVFYIKGKQQYKTPGKYTIEGDASSASYFLAAAAIKGGSIKVTGVGKKSIQGDIEFANILEKMGATIFWEDYSITCT--------RNKLNAIDLDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_PASHA (3-phosphoshikimate 1-carboxyvinyltransferase OS=Pasteurella haemolytica GN=aroA PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.871e-28
Identity = 80/208 (38.46%), Postives = 110/208 (52.88%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSP-GNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            IL G PRM+ERPI  LV  L+Q+GA+V  +     PP+ I+                  Q+             ++EIEII  L+S PY+++TL +M  FG+ VE+ D +  F ++G Q Y +P GN  VEGDASSASYF              G G  S+QGD  FA+ LEKMGAK TW E+ +           ++PL+ VD++MN
Sbjct:  117 ILTGEPRMKERPIKHLVDALRQVGAEVQYLENEGYPPLAISNSGLQGGKVQIDGSISS-QFLTALLMSAPLAESDMEIEIIGDLVSKPYIDITLSMMNDFGITVENRD-YKTFLVKGKQGYVAPQGNYLVEGDASSASYFLASGAIKGKVKVT-GIGKKSIQGDRLFADVLEKMGAKITWGEDFIQAE--------QSPLKGVDMDMN 313          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_HERAR (3-phosphoshikimate 1-carboxyvinyltransferase OS=Herminiimonas arsenicoxydans GN=aroA PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.667e-28
Identity = 78/209 (37.32%), Postives = 101/209 (48.33%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXG-NVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            Y L GV RM ERPIGDLV  L  +G  ++       PP+ I                                   +V I+++ +LIS PY+E+TL LM RFGV V+  D W  F I  GQ+Y SPG   VEGDASSASYF             EG G +S+QGDV+F E L++MGA  T  +N +       +      LRA+D + N
Sbjct:  117 YTLHGVSRMHERPIGDLVDALNAIGTHIEYTGEPGYPPLHIQRGRIHAQRMQVRGNVSSQFLTALLMAAPLMAREQDVTIDVVGELISKPYIEITLNLMRRFGVEVQR-DGWQSFTIAAGQRYISPGIIHVEGDASSASYFLAAGAIAGGPVRVEGVGKNSIQGDVRFVESLQQMGATITMGDNWI-------EAKSNGALRAIDADFN 317          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_THIDA (3-phosphoshikimate 1-carboxyvinyltransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=aroA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.308e-27
Identity = 76/208 (36.54%), Postives = 103/208 (49.52%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            Y+LDGV RM ERPIGDLV  L+QLG  +D       PP+ ++                  Q+                +E++ +LIS PY+E+TL ++ RFGV V   D W  F +     Y+SP   +VEGDASSASYF             EG G  S+QGDV FA+ L  MGA+     N +    P +   GR  L+A+D++ N
Sbjct:  111 YVLDGVARMHERPIGDLVDALRQLGGRIDYRGTLGFPPLHVHPPQAGADVAHIRGNVSS-QFLTGLLMALPLRRLRTRVEVVGELISKPYIEITLAMLRRFGVEVAR-DGWQAFSVAADACYRSPREIYVEGDASSASYFLAAGAIGGGPVRVEGVGRDSVQGDVGFADALAAMGARIAMGPNWIEACAPAQ---GR--LKAIDLDCN 311          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_HAES2 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Haemophilus somnus (strain 2336) GN=aroA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.708e-27
Identity = 77/207 (37.20%), Postives = 110/207 (53.14%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            IL G PRM+ERPI  LV  L+Q GA++  +     PP+ I                   Q+            G++EIEI+ +L+S PY+++TL +M+ FG+ VEH  ++ RF I+G Q Y SP    VEGDASSASYF              G G +S+QGD  FA+ L +MGAK TW E+ + V         ++ L+ +D++MN
Sbjct:  117 ILTGEPRMKERPIKHLVDALRQTGANIQYLENDGYPPLAIRNQGIFGGKVQIDGSISS-QFLTALLMAAPLGEGDMEIEILGELVSKPYIDITLAMMKDFGINVEH-YNYQRFLIKGKQYYISPQTYLVEGDASSASYF-LAAAAIKGKVKVTGIGRNSIQGDRLFADVLAQMGAKVTWGEDFIQVE--------KSELKGIDMDMN 312          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_HAES1 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Haemophilus somnus (strain 129Pt) GN=aroA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.708e-27
Identity = 77/207 (37.20%), Postives = 110/207 (53.14%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            IL G PRM+ERPI  LV  L+Q GA++  +     PP+ I                   Q+            G++EIEI+ +L+S PY+++TL +M+ FG+ VEH  ++ RF I+G Q Y SP    VEGDASSASYF              G G +S+QGD  FA+ L +MGAK TW E+ + V         ++ L+ +D++MN
Sbjct:  117 ILTGEPRMKERPIKHLVDALRQTGANIQYLENEGYPPLAIRNQGIFGGKVQIDGSISS-QFLTALLMAAPLGEGDMEIEILGELVSKPYIDITLAMMKDFGINVEH-YNYQRFLIKGKQYYISPQTYLVEGDASSASYF-LAAAAIKGKVKVTGIGRNSIQGDRLFADVLAQMGAKVTWGEDFIQVE--------KSELKGIDMDMN 312          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_BORPD (3-phosphoshikimate 1-carboxyvinyltransferase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=aroA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.708e-27
Identity = 80/212 (37.74%), Postives = 100/212 (47.17%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGN----VEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            Y L GVPRM ERPIGDLV  L+Q GA +D +     PP+ +                   Q+                  V IE+  +LIS PY+E+TL LM R+GV V   D W  F I+ G  Y+SPG   VEGDASSASYF              G G  S+QGDV FA  L  MG +  +  + +   G   D  GR  L+A D + N
Sbjct:  113 YRLSGVPRMHERPIGDLVDALRQWGARIDYLGQAGYPPLAVGEGRIRADAPARVQGAVSSQFLTALLLAAPVLAQGSDRPVVIEVAGELISKPYIEITLNLMARYGVQVRR-DGWRTFTIEPGAAYRSPGAIAVEGDASSASYFLALGAIGGGPVRVTGVGADSIQGDVAFARTLADMGVQIDYGPDWIEARGVRVDQGGR--LKAFDTDFN 321          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_NEIMB (3-phosphoshikimate 1-carboxyvinyltransferase OS=Neisseria meningitidis serogroup B GN=aroA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.231e-27
Identity = 75/190 (39.47%), Postives = 97/190 (51.05%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGP 646
            Y L GVPRM ERPIGDLV  L+  GADV+ +   + PP+ I                   Q+               EI ++ +LIS PY+++TLKLM +FGV V + + +  F I     Y +P +  VEGDASSASYF              G G +S+QGDV FA  LEK+GA   W EN V V+ P
Sbjct:  112 YHLHGVPRMHERPIGDLVDALRIAGADVEYLGKEHYPPLHIGERQDNGERVIPIKGNVSSQFLTALLMALPLTGQAFEIRMVGELISKPYIDITLKLMAQFGVQVIN-EGYRVFKIPADAHYHAPEHLHVEGDASSASYFLAAGLIAATPVRVTGIGANSIQGDVAFARELEKIGADVVWGENFVEVSRP 300          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_NEIG2 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=aroA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.231e-27
Identity = 74/190 (38.95%), Postives = 96/190 (50.53%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGP 646
            Y L GVPRM ERPIGDLV  L+  GADV+ +   + PP+ I                   Q+               EI ++ +LIS PY+++TLKLM +FGV V + + +  F I     Y +P +  VEGDAS ASYF              G G +S+QGDV FA  LEK+GA   W EN V V+ P
Sbjct:  112 YHLHGVPRMHERPIGDLVDALRIAGADVEYLGNEHYPPLHIGKRQDCGERVIPIKGNVSSQFLTALLMALPLTGQAFEIRMVGELISKPYIDITLKLMAQFGVQVAN-EGYRVFKIPADAHYHAPEHLHVEGDASGASYFLAAGLIAATPVRVTGIGANSIQGDVAFARELEKIGADVVWGENFVEVSRP 300          
The following BLAST results are available for this feature:
BLAST of DC900074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
AROA_BUCAI4.495e-2836.923-phosphoshikimate 1-carboxyvinyltransferase OS=Bu... [more]
AROA_BUCA54.495e-2836.923-phosphoshikimate 1-carboxyvinyltransferase OS=Bu... [more]
AROA_PASHA5.871e-2838.463-phosphoshikimate 1-carboxyvinyltransferase OS=Pa... [more]
AROA_HERAR7.667e-2837.323-phosphoshikimate 1-carboxyvinyltransferase OS=He... [more]
AROA_THIDA1.308e-2736.543-phosphoshikimate 1-carboxyvinyltransferase OS=Th... [more]
AROA_HAES21.708e-2737.203-phosphoshikimate 1-carboxyvinyltransferase OS=Ha... [more]
AROA_HAES11.708e-2737.203-phosphoshikimate 1-carboxyvinyltransferase OS=Ha... [more]
AROA_BORPD1.708e-2737.743-phosphoshikimate 1-carboxyvinyltransferase OS=Bo... [more]
AROA_NEIMB2.231e-2739.473-phosphoshikimate 1-carboxyvinyltransferase OS=Ne... [more]
AROA_NEIG22.231e-2738.953-phosphoshikimate 1-carboxyvinyltransferase OS=Ne... [more]

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Properties
Property NameValue
Genbank descriptionDC900074 VSS Citrus sinensis cDNA clone VS27Q80 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900074 ID=DC900074; Name=DC900074; organism=Citrus sinensis; type=EST; length=704bp
CTCGTGCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGTGCC
GAATTCGGCACGAGGGCAACTTGAGCTATATCCTTGATGGGGTGCCTCGA
ATGAGGGAGAGACCAATTGGAGACTTGGTCACTGGTCTGAAGCAGCTAGG
TGCAGATGTAGATTGCATTTTAGGCACAAATTGCCCCCCTGTTCGTATCA
ATGGAAAGGGAGGCCTCCCTGGGGGAAAGGTGAAACTCTCTGGAAAGCTT
AGTAGTCAATACTTGACTGCTTTGCTCATGGCAGCTCCCTTGGCCCTCGG
AAATGTGGAAATTGAAATAATTGATAAACTGATTTCCGTTCCTTATGTTG
AGATGACTCTGAAGTTGATGGAGCGTTTTGGGGTCTTTGTAGAGCACGGT
GATAGCTGGGATCGGTTCTTCATCCAGGGGGGTCAAAAGTACAAGTCTCC
TGGAAATGCTTTTGTAGAAGGTGATGCTTCAAGTGCTAGTTACTTTGTAG
CTGGTGCTGCAGTAACTGGTGGGACCGTTACAGTTGAAGGTTGTGGGACA
AGTAGTTTACAGGGGGATGTGAAATTTGCTGAGGNTCTTGAGAAAATGGG
TGCCAAAGNTACCTGGACTGAAAACAGNGTAACTGTCACCGGACCACCAC
GAGATCCTTATGGAAGGAACCCTTTGCGTGCTGTAGATGTCAACATGAAC
AAAT
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