DC900074

Overview
NameDC900074
Unique NameDC900074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_HAEIN (3-phosphoshikimate 1-carboxyvinyltransferase OS=Haemophilus influenzae GN=aroA PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.495e-26
Identity = 77/207 (37.20%), Postives = 103/207 (49.76%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            IL G PRM+ERPI  LV  L+Q GAD+  +     PP+ I                   Q+             + EIEII +L+S PY+++TL +M  FGV VE+   + +F ++G Q Y SP    VEGDASSASYF              G G +S+QGD  FA+ LEKMGAK TW E+ +              L  +D++MN
Sbjct:  117 ILTGEPRMKERPILHLVDALRQAGADIRYLENEGYPPLAIRNKGIKGGKVKIDGSISS-QFLTALLMSAPLAENDTEIEIIGELVSKPYIDITLAMMRDFGVQVEN-HHYQKFQVKGNQSYISPNKYLVEGDASSASYFLAAGAIKGKVKVT-GIGKNSIQGDRLFADVLEKMGAKITWGEDFIQAE--------HAELNGIDMDMN 312          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_HAEIE (3-phosphoshikimate 1-carboxyvinyltransferase OS=Haemophilus influenzae (strain PittEE) GN=aroA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.495e-26
Identity = 77/207 (37.20%), Postives = 103/207 (49.76%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            IL G PRM+ERPI  LV  L+Q GAD+  +     PP+ I                   Q+             + EIEII +L+S PY+++TL +M  FGV VE+   + +F ++G Q Y SP    VEGDASSASYF              G G +S+QGD  FA+ LEKMGAK TW E+ +              L  +D++MN
Sbjct:  117 ILTGEPRMKERPILHLVDALRQAGADIRYLENEGYPPLAIRNKGIKGGKVKIDGSISS-QFLTALLMSAPLAENDTEIEIIGELVSKPYIDITLAMMRDFGVKVEN-HHYQKFQVKGNQSYISPNKYLVEGDASSASYFLAAGAIKGKVKVT-GIGKNSIQGDRLFADVLEKMGAKITWGEDFIQAE--------HAELNGIDMDMN 312          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_HAEI8 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Haemophilus influenzae (strain 86-028NP) GN=aroA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.495e-26
Identity = 77/207 (37.20%), Postives = 103/207 (49.76%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            IL G PRM+ERPI  LV  L+Q GAD+  +     PP+ I                   Q+             + EIEII +L+S PY+++TL +M  FGV VE+   + +F ++G Q Y SP    VEGDASSASYF              G G +S+QGD  FA+ LEKMGAK TW E+ +              L  +D++MN
Sbjct:  117 ILTGEPRMKERPILHLVDALRQAGADIRYLENEGYPPLAIRNKGIKGGKVKIDGSISS-QFLTALLMSAPLAENDTEIEIIGELVSKPYIDITLAMMRDFGVKVEN-HHYQKFQVKGNQSYISPNKYLVEGDASSASYFLAAGAIKGKVKVT-GIGKNSIQGDRLFADVLEKMGAKITWGEDFIQAE--------HAELNGIDMDMN 312          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_PSEHT (3-phosphoshikimate 1-carboxyvinyltransferase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=aroA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.177e-26
Identity = 72/208 (34.62%), Postives = 104/208 (50.00%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            Y L G PRM ERPIG LV  L+ LG D+      + PP++I                   Q+            G+ +I I   L+S PY+++TL +M RFG+ VEH + +  F ++GGQ+Y+S     VEGDASSASYF             +G G  S+QGD+ FA+ +E++GAK  W +  + V         +  L  VD++ N
Sbjct:  112 YELIGEPRMEERPIGHLVDALQALGGDITYSKNKDYPPLKI-IGGQINGGEVAIDGSISSQFLTALLMAAPLFNGDTKITIKGTLVSKPYIDITLDVMARFGIEVEHSN-YATFTVKGGQQYQSLERIMVEGDASSASYFVAAAAIAGGEIEIKGVGAKSVQGDIGFAKVMEQVGAKIDWYDERLVVR--------KGQLNGVDIDAN 309          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_HAEIG (3-phosphoshikimate 1-carboxyvinyltransferase OS=Haemophilus influenzae (strain PittGG) GN=aroA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.177e-26
Identity = 78/207 (37.68%), Postives = 105/207 (50.72%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            IL G PRM+ERPI  LV  L+Q GAD+  +     PP+ I                   Q+             + EIEII +L+S PY+++TL +M  FGV VE+   + +F ++G Q Y SP    VEGDASSASYF              G G +S+QGD  FA+ LEKMGAK TW E+ +      +  Y    L  +D++MN
Sbjct:  117 ILTGEPRMKERPILHLVDALRQAGADIRYLENEGYPPLAIRNKGIKGGKVKIDGSISS-QFLTALLMSTPLAENDTEIEIIGELVSKPYIDITLAMMRDFGVKVEN-HHYQKFQVKGNQSYISPNKYLVEGDASSASYFLAAGAIKGKVKVT-GIGKNSIQGDRLFADVLEKMGAKITWGEDFI------QAEYAE--LNGIDMDMN 312          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_NITEC (3-phosphoshikimate 1-carboxyvinyltransferase OS=Nitrosomonas eutropha (strain C91) GN=aroA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25
Identity = 77/208 (37.02%), Postives = 100/208 (48.08%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            Y L GVPRM ERPIGDLV  L+Q+GA +  +   + PP+ I+                  Q+                I +   LIS PYV +T+  M  FGV VE  +SW RF + G Q Y SPG   VEGDASSASYF             +G G  S QGD++F E LE MGA      + +  + P     G+  L+A+D + N
Sbjct:  111 YHLSGVPRMHERPIGDLVDALRQVGAVITYLEREHFPPLEIHPAAIHPADILINGNISS-QFLSGLLMALPLAGEPATIIVNGTLISQPYVTLTIAQMAYFGVQVER-ESWLRFIVPGNQIYHSPGKIVVEGDASSASYFLAAGAIAGGPVRVDGVGRDSCQGDIRFVEALEAMGACIKMGSDWIESSAPGCRSDGK-VLKAIDFDCN 315          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_HAESO (3-phosphoshikimate 1-carboxyvinyltransferase OS=Haemophilus somnus GN=aroA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25
Identity = 74/207 (35.75%), Postives = 108/207 (52.17%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            IL G PRM+ERPI  LV  L+Q GA++  +     PP+ I                   Q+            G++EIEI+ +L+S PY+++T  +M+ FG+ V+   ++ RF I+G Q Y SP    VEGDASSASYF              G G +S+QGD  FA+ L +MGAK TW E+ + V         ++ L+ +D++MN
Sbjct:  117 ILTGEPRMKERPIKHLVDALRQTGANIQYLENDGYPPLAIR-NQGIFGGKVQIDGSISSQFLTALLMAAPLGEGDMEIEILGELVSKPYIDITPAMMKDFGINVD-DYNYQRFLIKGKQYYISPQTYLVEGDASSASYF-LAAAAIKGKVKVTGIGRNSIQGDRLFADVLAQMGAKVTWGEDFIQVE--------KSELKGIDMDMN 312          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_HAEDU (3-phosphoshikimate 1-carboxyvinyltransferase OS=Haemophilus ducreyi GN=aroA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25
Identity = 72/216 (33.33%), Postives = 110/216 (50.93%), Query Frame = 2
Query:   53 IRHEGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            ++ E     +L G  RM++RPI  LV  L+Q GA+++ +     PP+ I                   Q+             +++IEI+  L+S PY++MTL +M  FGV V++ +++  FF+Q  Q Y SPG  +VEGDASSASYF              G G +S+QGD  FA+ L KMGA  +W E+ +           ++ LR +DV++N
Sbjct:  111 LKGEVRAEVVLTGEARMQQRPIQHLVDALRQAGANIEYLENQGYPPLAIKNTGLIGGKIQIDGSISS-QFLTALLMVAPLAESDMQIEIVGDLVSKPYIDMTLAMMRDFGVVVQN-NNYQSFFVQAQQCYLSPGQYWVEGDASSASYF-LAAAAIKGKVKVNGIGKNSIQGDRLFADVLAKMGANISWGEDFIQAE--------KSVLRGIDVDLN 315          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_ACTSZ (3-phosphoshikimate 1-carboxyvinyltransferase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=aroA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 76/214 (35.51%), Postives = 107/214 (50.00%), Query Frame = 2
Query:   59 HEGNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            +E     +L G PRM+ERPI  LV  L Q GA+++ +     PP+ I                   Q+             + EIEII  L+S PY+++TL +M+ FGV VE+ + + RF ++G Q+Y+SP    VEGDASSASYF              G G +S+QGD  FA+ L  MGAK TW E+ +           +  L  VD++MN
Sbjct:  113 NESPAEIVLTGEPRMKERPIKHLVDALLQAGAEIEYLEQDGYPPLAIRNKGLHGGKVKIDGSVSS-QFLTALLMAAPMSAADTEIEIIGDLVSKPYIDITLNMMKIFGVEVENRN-YQRFTVKGCQQYQSPKTFLVEGDASSASYF-LAAGAIKGCVKVTGVGKNSIQGDRLFADVLTAMGAKITWGEDFIRAE--------QGELSGVDMDMN 315          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_BAUCH (3-phosphoshikimate 1-carboxyvinyltransferase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=aroA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 69/211 (32.70%), Postives = 107/211 (50.71%), Query Frame = 2
Query:   68 NLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            N + I+ G  RM+ RPIG LV  L+Q  A +  +   N PP+ +                   Q+             +  I +  +L+S PY++MTL +M+ FG+ V+H D +  F+I+G  +Y+SPG+  VEGDA++ASYF              G G++S+QGD++FA+ L  MGA   W  N +  T        RN L ++D++MN
Sbjct:  111 NKNIIITGDKRMKNRPIGHLVDALRQGSAQIHYLEKDNYPPLLLQGGFYNGDITIDCSLSS--QFLTSLLMMAPLASQDRCIFVKGRLVSKPYIDMTLAMMKSFGIVVQH-DQYKIFYIKGKSQYRSPGHYLVEGDATNASYFLAAAAIRGGTVRVTGVGSNSIQGDIRFADILANMGAIIRWGVNYIECT--------RNSLCSIDIDMN 310          
The following BLAST results are available for this feature:
BLAST of DC900074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
AROA_HAEIN5.495e-2637.203-phosphoshikimate 1-carboxyvinyltransferase OS=Ha... [more]
AROA_HAEIE5.495e-2637.203-phosphoshikimate 1-carboxyvinyltransferase OS=Ha... [more]
AROA_HAEI85.495e-2637.203-phosphoshikimate 1-carboxyvinyltransferase OS=Ha... [more]
AROA_PSEHT7.177e-2634.623-phosphoshikimate 1-carboxyvinyltransferase OS=Ps... [more]
AROA_HAEIG7.177e-2637.683-phosphoshikimate 1-carboxyvinyltransferase OS=Ha... [more]
AROA_NITEC2.727e-2537.023-phosphoshikimate 1-carboxyvinyltransferase OS=Ni... [more]
AROA_HAESO2.727e-2535.753-phosphoshikimate 1-carboxyvinyltransferase OS=Ha... [more]
AROA_HAEDU2.727e-2533.333-phosphoshikimate 1-carboxyvinyltransferase OS=Ha... [more]
AROA_ACTSZ4.652e-2535.513-phosphoshikimate 1-carboxyvinyltransferase OS=Ac... [more]
AROA_BAUCH7.935e-2532.703-phosphoshikimate 1-carboxyvinyltransferase OS=Ba... [more]

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Properties
Property NameValue
Genbank descriptionDC900074 VSS Citrus sinensis cDNA clone VS27Q80 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900074 ID=DC900074; Name=DC900074; organism=Citrus sinensis; type=EST; length=704bp
CTCGTGCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGTGCC
GAATTCGGCACGAGGGCAACTTGAGCTATATCCTTGATGGGGTGCCTCGA
ATGAGGGAGAGACCAATTGGAGACTTGGTCACTGGTCTGAAGCAGCTAGG
TGCAGATGTAGATTGCATTTTAGGCACAAATTGCCCCCCTGTTCGTATCA
ATGGAAAGGGAGGCCTCCCTGGGGGAAAGGTGAAACTCTCTGGAAAGCTT
AGTAGTCAATACTTGACTGCTTTGCTCATGGCAGCTCCCTTGGCCCTCGG
AAATGTGGAAATTGAAATAATTGATAAACTGATTTCCGTTCCTTATGTTG
AGATGACTCTGAAGTTGATGGAGCGTTTTGGGGTCTTTGTAGAGCACGGT
GATAGCTGGGATCGGTTCTTCATCCAGGGGGGTCAAAAGTACAAGTCTCC
TGGAAATGCTTTTGTAGAAGGTGATGCTTCAAGTGCTAGTTACTTTGTAG
CTGGTGCTGCAGTAACTGGTGGGACCGTTACAGTTGAAGGTTGTGGGACA
AGTAGTTTACAGGGGGATGTGAAATTTGCTGAGGNTCTTGAGAAAATGGG
TGCCAAAGNTACCTGGACTGAAAACAGNGTAACTGTCACCGGACCACCAC
GAGATCCTTATGGAAGGAACCCTTTGCGTGCTGTAGATGTCAACATGAAC
AAAT
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