DC900074

Overview
NameDC900074
Unique NameDC900074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_BLOPB (3-phosphoshikimate 1-carboxyvinyltransferase OS=Blochmannia pennsylvanicus (strain BPEN) GN=aroA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 70/207 (33.82%), Postives = 104/207 (50.24%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            +L G PRM++RPI  LV  L+Q GA ++ +     PP+R+                   Q+             +  I++   L+S PY+++TL LM+ FG+ ++H D++  F+ +G   Y+SPG+  VEGDASSASYF              G G +S QGD+ FA  LE MGAK  W +N +  T           L AVD+++N
Sbjct:  117 VLTGHPRMKDRPIAHLVDALRQGGARIEYMERNGYPPIRL--YGGYYGGEIFIKGSISSQFLSSVLMMTPLAYRDTLIKVDGALVSRPYIDITLSLMKIFGINIQH-DNYRVFYCKGNMAYQSPGDYLVEGDASSASYFLAASAIRGGTVRVIGVGRNSKQGDIYFANILESMGAKIAWGDNYIECTRGA-------DLNAVDLDVN 313          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_HAMD5 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=aroA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23
Identity = 73/212 (34.43%), Postives = 103/212 (48.58%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G    +L G  RM+ERP+  LV  L+Q  A +  +   N PP+R+                   Q+             +  IE+   L+S PYVEMTL LM  FG+ V H   +  F I+  QK+KSPG+  +EGDA++ASYF              G G  S+QGDV+FA+ L+KMGA   W E+ +    P R       L+ +D++MN
Sbjct:  110 GQSDVVLTGGARMKERPMDPLVDALRQGNAQITYLEKKNSPPLRLRGGFRGGNLTLRGNISS--QFLTALLIMAPLAEQDTAIEVQGFLVSKPYVEMTLHLMRVFGISVTH-KHYRTFNIKAHQKFKSPGHYRIEGDATAASYFLAAAAIKGGCVRVIGVGQKSIQGDVQFADVLQKMGAFIHWGEDYIECR-PGR-------LKGIDMDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_BLOFL (3-phosphoshikimate 1-carboxyvinyltransferase OS=Blochmannia floridanus GN=aroA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 63/184 (34.24%), Postives = 92/184 (50.00%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXV 631
            +L G  RM+ERPI  LV  L+Q G  ++ I   +  PV++                   Q+             N  IE+I  L+S PY+++TL +M  FG+ V+H   +  F+ +G + YK+P    +EGDASSASYF              G G +S QGD+KFA  LE+MG+  TW +N +
Sbjct:  116 VLTGDMRMKERPIFHLVDTLRQGGGRIEYIERDHHLPVKL--YGGYCGGNIVIKGDISSQFLSAVLMMTPLASKNTYIEVIGSLVSKPYIDITLSVMRAFGICVQHDKDYKFFYCEGNRIYKAPQEYVIEGDASSASYFLAAAAIKGGTIRVLGVGKNSKQGDIKFANILERMGSIITWGDNYI 297          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_BUCBP (3-phosphoshikimate 1-carboxyvinyltransferase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=aroA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22
Identity = 69/211 (32.70%), Postives = 104/211 (49.29%), Query Frame = 2
Query:   68 NLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            N + +L G  RM++RPI  LV  L+Q GA +        PP++I                   Q+             +  I + +KL+S PY+++TL L+ +FG+ + H D + +F +QG QKY SP    +EGDASSASYF              G G +S+QGDVKFA  L+KMGA  T+ ++ +           +  L  +D++MN
Sbjct:  111 NNNILLTGNKRMKQRPIKHLVQALQQGGAQITYSEQDQYPPIKIKGGFIGGNIFVSGKISS--QFLSALLIATPLAQLDSTITVTEKLVSKPYIDITLNLISKFGIKIIHKD-YTKFNVQGRQKYISPKEYSIEGDASSASYFLAAAAIKGGSVKVTGIGLNSIQGDVKFANVLKKMGAYITFGKDFIVCK--------KKDLIGIDLDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_AERSA (3-phosphoshikimate 1-carboxyvinyltransferase OS=Aeromonas salmonicida GN=aroA PE=3 SV=4)

HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22
Identity = 71/212 (33.49%), Postives = 101/212 (47.64%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+  Y+L G PRM ERPIG LV  L   GA +  +     PP+ ++                                    I I  +L+S PY+++TL +M   GV +EH D++  F+I+G Q   SPG+  VEGDASSASYF              G G  S+ GD+ FA+ LE+MGA+ TW ++ +           + PL  VD++MN
Sbjct:  109 GSGEYMLGGEPRMEERPIGHLVDCLALKGAHIQYLKKDGYPPLVVDAKGLWGGDVHVDGSVSSQFLTAFLMAAPAMAPVIPRIHIKGELVSKPYIDITLHIMNSSGVVIEH-DNYKLFYIKGNQSIVSPGDFLVEGDASSASYF-LAAGAIKGKVRVTGIGKHSI-GDIHFADVLERMGARITWGDDFIEAE--------QGPLHGVDMDMN 309          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA1_STRCO (3-phosphoshikimate 1-carboxyvinyltransferase 1 OS=Streptomyces coelicolor GN=aroA1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.287e-22
Identity = 70/206 (33.98%), Postives = 94/206 (45.63%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNM 697
            I+ G  RM+ERP+GDL+  L  LG D   + G   PPVR+                   Q+             + EI I D L+S PYVEMTL  +   GV V+  D + RF +  GQ+ +  G   VE DAS  SYF              G G  S QGDV   + LE+MG +    ++ +TVTG         PLR +D++M
Sbjct:  124 IITGNARMQERPMGDLLKALPALGVDATAVRGNGSPPVRV-VGGSFKGGATSISGAVSSQFTSSLIINALRAQTDTEITISDDLVSKPYVEMTLAGLAEMGVSVDR-DGYRRFTVPSGQQARG-GQVTVEPDASGMSYFLAAAAILQSRVVIPGIGAGSHQGDVHLVQALERMGCRTEVGDDSITVTG--------GPLRGIDIDM 318          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_IDILO (3-phosphoshikimate 1-carboxyvinyltransferase OS=Idiomarina loihiensis GN=aroA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.075e-21
Identity = 60/188 (31.91%), Postives = 97/188 (51.60%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTG 643
            +L G  RM ERP+  L+  ++  GA V+ +  T  PP+ +                   Q+            G+  + +   ++S PY+E+TL+++  FG+ ++  DS   + I GGQ Y+SPG  +VEGDAS+ASY+              G G +S+QGD +FAE +E MGA  ++ +N +TV+G
Sbjct:  116 VLKGDARMHERPVKHLIDAIQPRGAGVNYLGETGFPPLEMTSGLKPGDFEIDGSVSS--QFISALLMALPLLPGDSTLTLKGNVVSRPYIELTLQMLSDFGISIKE-DSPQCYAIPGGQCYQSPGEYWVEGDASAASYWMAAALLGKGPVEIIGVGKNSIQGDKRFAEVIEAMGASVSYRKNSMTVSG 300          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_BUCCC (3-phosphoshikimate 1-carboxyvinyltransferase OS=Buchnera aphidicola subsp. Cinara cedri GN=aroA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.450e-20
Identity = 59/184 (32.07%), Postives = 88/184 (47.83%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXV 631
            IL G  RM+ERPI  LV  L+Q GA++        PP+ I                   Q+             + EI + ++L+S PY+ +T+ LME+FG+ V   + +  F+I+G QKY SP   ++E D SSA+YF              G    S+QGD+ F + L++MG    W +N V
Sbjct:  115 ILTGEKRMKERPIHHLVDSLRQGGANITYKNKKKFPPLYIKGGFKGGKIFIDGSISS--QFLSSLLMAAPLAELDTEIIVKNQLVSKPYINLTINLMEKFGISVSILNDYKHFYIKGNQKYISPKKYYIESDLSSATYFLAAAAIKGGSIQINGIQKKSIQGDINFIKILKQMGVSIQWKKNSV 296          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SYNFM (3-phosphoshikimate 1-carboxyvinyltransferase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=aroA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.570e-17
Identity = 63/209 (30.14%), Postives = 90/209 (43.06%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMNK 703
            +  DG PR+R+RP+  LV+ L+ LGA  DC       P+R+                   Q+            G V +E ++ + S PYV MTL +M   G+     D  +R  +   Q+Y + G   VE D SSASY                    SLQGD +F   LE+MG + TW E+ V V            LR VD+++N+
Sbjct:  109 FTFDGAPRLRQRPVKPLVSALEMLGARFDCTETDGFLPLRV-IAHGLSGGKVLVDARQSGQFLSAVLMAAPCAGGEVTVEWLEPVASYPYVAMTLAMMGERGIDFRK-DRANRVIVPAPQRY-AGGRWTVEADCSSASYLWAAAALTGGDVLTHPLSPDSLQGDCRFLGILERMGCRVTWEEDGVRVV-------SSGELRPVDLDLNE 307          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: ARO1_EMENI (Pentafunctional AROM polypeptide OS=Emericella nidulans GN=aroMA PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 7.953e-17
Identity = 60/193 (31.09%), Postives = 86/193 (44.56%), Query Frame = 2
Query:   74 SYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIID-KLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFA-EXLEKMGAKXTWTENXVTVTGP 646
            S +L G  RM++RPIGDLV  L   GA ++ +  T   P++I                   QY              V + ++  K IS PY++MT  +M  FG+ V+   + +  +     +Y +P    +E DASSA+Y                 G++SLQGD +FA E L  MG     TE   TVTGP
Sbjct:  509 SSVLTGNNRMKQRPIGDLVDALTANGASIEYVERTGSLPLKIAASGGFAGGNINLAAKVSSQYVSSLLMCAPYAKEPVTLRLVGGKPISQPYIDMTTAMMRSFGIDVQKSTTEEHTYHIPQGRYVNPAEYVIESDASSATYPLAVAAVTGTTCTVPNIGSASLQGDARFAVEVLRPMGCTVEQTETSTTVTGP 701          
The following BLAST results are available for this feature:
BLAST of DC900074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
AROA_BLOPB1.036e-2433.823-phosphoshikimate 1-carboxyvinyltransferase OS=Bl... [more]
AROA_HAMD54.354e-2334.433-phosphoshikimate 1-carboxyvinyltransferase OS=Ha... [more]
AROA_BLOFL5.686e-2334.243-phosphoshikimate 1-carboxyvinyltransferase OS=Bl... [more]
AROA_BUCBP1.654e-2232.703-phosphoshikimate 1-carboxyvinyltransferase OS=Bu... [more]
AROA_AERSA2.161e-2233.493-phosphoshikimate 1-carboxyvinyltransferase OS=Ae... [more]
AROA1_STRCO6.287e-2233.983-phosphoshikimate 1-carboxyvinyltransferase 1 OS=... [more]
AROA_IDILO4.075e-2131.913-phosphoshikimate 1-carboxyvinyltransferase OS=Id... [more]
AROA_BUCCC3.450e-2032.073-phosphoshikimate 1-carboxyvinyltransferase OS=Bu... [more]
AROA_SYNFM3.570e-1730.143-phosphoshikimate 1-carboxyvinyltransferase OS=Sy... [more]
ARO1_EMENI7.953e-1731.09Pentafunctional AROM polypeptide OS=Emericella nid... [more]

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Properties
Property NameValue
Genbank descriptionDC900074 VSS Citrus sinensis cDNA clone VS27Q80 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900074 ID=DC900074; Name=DC900074; organism=Citrus sinensis; type=EST; length=704bp
CTCGTGCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGTGCC
GAATTCGGCACGAGGGCAACTTGAGCTATATCCTTGATGGGGTGCCTCGA
ATGAGGGAGAGACCAATTGGAGACTTGGTCACTGGTCTGAAGCAGCTAGG
TGCAGATGTAGATTGCATTTTAGGCACAAATTGCCCCCCTGTTCGTATCA
ATGGAAAGGGAGGCCTCCCTGGGGGAAAGGTGAAACTCTCTGGAAAGCTT
AGTAGTCAATACTTGACTGCTTTGCTCATGGCAGCTCCCTTGGCCCTCGG
AAATGTGGAAATTGAAATAATTGATAAACTGATTTCCGTTCCTTATGTTG
AGATGACTCTGAAGTTGATGGAGCGTTTTGGGGTCTTTGTAGAGCACGGT
GATAGCTGGGATCGGTTCTTCATCCAGGGGGGTCAAAAGTACAAGTCTCC
TGGAAATGCTTTTGTAGAAGGTGATGCTTCAAGTGCTAGTTACTTTGTAG
CTGGTGCTGCAGTAACTGGTGGGACCGTTACAGTTGAAGGTTGTGGGACA
AGTAGTTTACAGGGGGATGTGAAATTTGCTGAGGNTCTTGAGAAAATGGG
TGCCAAAGNTACCTGGACTGAAAACAGNGTAACTGTCACCGGACCACCAC
GAGATCCTTATGGAAGGAACCCTTTGCGTGCTGTAGATGTCAACATGAAC
AAAT
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