DC900074

Overview
NameDC900074
Unique NameDC900074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900074_ssr10 microsatellite DC900074_ssr10:10..41. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5635 contig Csv1_Contig5635:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_ECO81 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Escherichia coli O81 (strain ED1a) GN=aroA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.272e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+Q GA +  +   N PP+R+                   Q+             +  I I   L+S PY+++TL LM+ FGV +E+   + +F ++GGQ Y+SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGA   W ++ ++ T        R  L A+D++MN
Sbjct:  109 GSNDIVLTGEPRMKERPIGHLVDALRQGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIEN-QHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIRGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMN 309          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_ECO45 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=aroA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.272e-30
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+Q GA +  +   N PP+R+                   Q+             +  I I   L+S PY+++TL LM+ FGV +E+   + +F ++GGQ Y+SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGA   W ++ ++ T        R  L A+D++MN
Sbjct:  109 GSNDIVLTGEPRMKERPIGHLVDALRQGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIEN-QHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIRGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMN 309          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_PECCP (3-phosphoshikimate 1-carboxyvinyltransferase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=aroA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 75/207 (36.23%), Postives = 112/207 (54.11%), Query Frame = 2
Query:   80 ILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            +L G PRM+ERPIG LV  L+Q GA +D +   N PP+R++                  Q+             + +I I   L+S PY+++TL +M+ FG+ V + +++ RFF+ G Q+Y+SPG+  VEGDASSASYF              G G +S+QGD++FA+ LE+MGA   W E+ +           R  L A+D++MN
Sbjct:  115 VLTGEPRMKERPIGHLVDALRQGGAKIDYLEQENYPPLRLHGGFQGGEISVDGSVSS--QFLTALLMTAPLAAQDTQISIQGDLVSKPYIDITLHMMKAFGIEVRN-ENYQRFFVAGRQQYRSPGDYLVEGDASSASYFLAAAAIKGGVVRVTGVGRNSVQGDIRFADVLERMGAIVRWGEDYIECE--------RGELHAIDMDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_MARMS (3-phosphoshikimate 1-carboxyvinyltransferase OS=Marinomonas sp. (strain MWYL1) GN=aroA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 80/212 (37.74%), Postives = 110/212 (51.89%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   ++L G PRM ERPIGDLV  L+ LG D+      N PP+RI                   Q+             ++ I++  +L+S PY+++TL  M++FGV VE+  ++  F ++G Q Y+SPG   VEGDASSASYF              G GT S+QGDVKFA+ L +MGAK T+        GP      RN L  +D++MN
Sbjct:  108 GKGEFLLHGEPRMHERPIGDLVDALQALGVDITYEGEKNYPPLRIKANGLSGGEVSIKGNISS-QFLTAILMSAPLAKSDLTIKVDGELVSKPYIDITLHAMKQFGVEVEN-QNYQAFVVKGQQTYQSPGEIMVEGDASSASYFLAAAAIAGGKIKVHGVGTDSVQGDVKFADVLAQMGAKITY--------GPSWIEAERNELNGIDMDMN 309          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_AERS4 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Aeromonas salmonicida (strain A449) GN=aroA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 76/212 (35.85%), Postives = 112/212 (52.83%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+  Y+L G PRM ERPIG LV  L++ GA +  +     PP+ ++                  Q+            G+  I I  +L+S PY+++TL +M++FGV +EH D++  F+I+G Q Y SPG+  VEGDASSASYF              G G  S+QGD+ FA+ LE+MGA+ TW ++ +           + PL  VD++MN
Sbjct:  109 GSGEYMLGGEPRMEERPIGHLVDALREAGAHIQYLKKDGYPPLVVDAKGLWGGDVHVDGSVSS-QFLTAFLMAAPMAAGDTRIHIKGELVSKPYIDITLHIMKQFGVVIEH-DNYKLFYIKGNQSYVSPGDFLVEGDASSASYF-LAAGAIKGKVRVTGIGKHSIQGDIHFADVLERMGARITWGDDFIEAE--------QGPLHGVDMDMN 309          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_TOLAT (3-phosphoshikimate 1-carboxyvinyltransferase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=aroA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.397e-29
Identity = 80/212 (37.74%), Postives = 111/212 (52.36%), Query Frame = 2
Query:   68 NLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMNK 703
            N  + L G PRM ERPI  LV  L+Q GA V  +     PP+ I                   Q+            G+V I I  +L+S PY+++TL +M++FGV VEH D +  F+++G Q Y SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGAK TW ++ +       +      L+AVD++MN+
Sbjct:  110 NGEFTLTGEPRMEERPIAHLVDALRQAGAHVHYLKKDGYPPLTIEGKGLWGGEVVIDGSVSS-QFLTAFLMAAPLASGDVRIRIRGELVSKPYIDITLHIMKQFGVTVEH-DDYQVFYVRGNQTYVSPGTFLVEGDASSASYF-LAAGAIKGKVRVTGIGKNSIQGDIRFADVLEKMGAKITWGDDFI-------EAENVGELQAVDLDMNQ 311          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_PSEA6 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=aroA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.397e-29
Identity = 75/206 (36.41%), Postives = 110/206 (53.40%), Query Frame = 2
Query:   83 LDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            L G PRM ERPIG LV  L+Q GA +  +     PP+++                   Q+             +  I I+ +L+S PY+++TL  M +FG+ VE+ +++  F ++G Q+Y++ G+  VEGDASSASYF              G G  S+QGD++FA+ LEKMGAK TW ++ + VTG         PL AVD++MN
Sbjct:  118 LTGEPRMEERPIGALVDSLRQAGAQITYLKNEGYPPLKMKGMALKGGNISVEGAVSS-QFLTALLMAAPLFEHDSVINIVGELVSKPYIDITLNTMAQFGITVEN-NNYQSFTVKGNQQYQAAGDFLVEGDASSASYFLAAGAIKGGTVRVTGVGKKSIQGDIRFADVLEKMGAKITWGDDYIEVTGA--------PLTAVDMDMN 313          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_XENNE (3-phosphoshikimate 1-carboxyvinyltransferase OS=Xenorhabdus nematophilus GN=aroA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.825e-29
Identity = 82/212 (38.68%), Postives = 106/212 (50.00%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+Q GA +D I   N PP+ I                   Q+             N EI I   L+S PY+++TL LM+ FGV VE+   +  F+I+G Q+Y SPG   VEGDASSASYF              G G +SLQGD KFA  LE+MGA   W ++ V           R  L  +D++MN
Sbjct:  109 GDNEIVLTGEPRMKERPIGHLVDALRQGGAKIDYIEQENYPPLHIKGGFSGGKVTVDGSVSS--QFLTALLMAAPLAVNNTEIHIQGDLVSKPYIDITLALMKSFGVTVEN-HQYQVFYIRGRQQYLSPGQYLVEGDASSASYFLAAAAIKGGIVRVTGIGKNSLQGDTKFANVLEQMGATIRWGDDFVECE--------RGTLTGIDMDMN 309          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_COLP3 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=aroA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.113e-29
Identity = 79/208 (37.98%), Postives = 106/208 (50.96%), Query Frame = 2
Query:   77 YILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            +IL G PRM+ERPIG LV  L QL AD++ +   + PPV+I                   Q+             N  IEI  +L+S PY+++TL +M RF V V++ D +  F + G Q Y++     VEGDASSASYF              G G  S+QGD  FA+ LEKMGA+  W +  +TV G         PL AVD++MN
Sbjct:  113 FILTGEPRMKERPIGHLVDALAQLDADIEYLENKDYPPVKIKGKALTGNTVTIDGSISS-QFLTAILMIAPLLETNTTIEIDGELVSKPYIDITLDIMRRFNVSVQNND-YKSFIVNGKQSYQALDKYMVEGDASSASYFLAAGAIKGGEVTVHGIGKLSVQGDKHFADVLEKMGAEIHWKDESITVIG--------KPLTAVDMDMN 310          
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_VIBHB (3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=aroA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 74/189 (39.15%), Postives = 102/189 (53.97%), Query Frame = 2
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXV 631
            G   Y+L G PRM+ERPIG LV  LK  GADV  +   N PP++I                   Q+            G++ I I  +L+S PY+++TL +M++FGV V + D +  F I  GQ+Y +PG+  VEGDASSASYF              G G +S+QGD++FA+ LEKMGA   W ++ V
Sbjct:  109 GEGEYVLTGEPRMKERPIGHLVKALKAAGADVTYLENENYPPLKI-VGTGLKPGSVSIDGSISSQFLTAFLMSAPLAEGDIRINIEGELVSKPYIDITLHIMKQFGVDVINND-YQEFVIPVGQQYVAPGDFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGADIEWGDDYV 295          
The following BLAST results are available for this feature:
BLAST of DC900074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
AROA_ECO816.272e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Es... [more]
AROA_ECO456.272e-3036.323-phosphoshikimate 1-carboxyvinyltransferase OS=Es... [more]
AROA_PECCP1.070e-2936.233-phosphoshikimate 1-carboxyvinyltransferase OS=Pe... [more]
AROA_MARMS1.070e-2937.743-phosphoshikimate 1-carboxyvinyltransferase OS=Ma... [more]
AROA_AERS41.070e-2935.853-phosphoshikimate 1-carboxyvinyltransferase OS=Ae... [more]
AROA_TOLAT1.397e-2937.743-phosphoshikimate 1-carboxyvinyltransferase OS=To... [more]
AROA_PSEA61.397e-2936.413-phosphoshikimate 1-carboxyvinyltransferase OS=Ps... [more]
AROA_XENNE1.825e-2938.683-phosphoshikimate 1-carboxyvinyltransferase OS=Xe... [more]
AROA_COLP33.113e-2937.983-phosphoshikimate 1-carboxyvinyltransferase OS=Co... [more]
AROA_VIBHB4.066e-2939.153-phosphoshikimate 1-carboxyvinyltransferase OS=Vi... [more]

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Properties
Property NameValue
Genbank descriptionDC900074 VSS Citrus sinensis cDNA clone VS27Q80 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900074 ID=DC900074; Name=DC900074; organism=Citrus sinensis; type=EST; length=704bp
CTCGTGCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGTGCC
GAATTCGGCACGAGGGCAACTTGAGCTATATCCTTGATGGGGTGCCTCGA
ATGAGGGAGAGACCAATTGGAGACTTGGTCACTGGTCTGAAGCAGCTAGG
TGCAGATGTAGATTGCATTTTAGGCACAAATTGCCCCCCTGTTCGTATCA
ATGGAAAGGGAGGCCTCCCTGGGGGAAAGGTGAAACTCTCTGGAAAGCTT
AGTAGTCAATACTTGACTGCTTTGCTCATGGCAGCTCCCTTGGCCCTCGG
AAATGTGGAAATTGAAATAATTGATAAACTGATTTCCGTTCCTTATGTTG
AGATGACTCTGAAGTTGATGGAGCGTTTTGGGGTCTTTGTAGAGCACGGT
GATAGCTGGGATCGGTTCTTCATCCAGGGGGGTCAAAAGTACAAGTCTCC
TGGAAATGCTTTTGTAGAAGGTGATGCTTCAAGTGCTAGTTACTTTGTAG
CTGGTGCTGCAGTAACTGGTGGGACCGTTACAGTTGAAGGTTGTGGGACA
AGTAGTTTACAGGGGGATGTGAAATTTGCTGAGGNTCTTGAGAAAATGGG
TGCCAAAGNTACCTGGACTGAAAACAGNGTAACTGTCACCGGACCACCAC
GAGATCCTTATGGAAGGAACCCTTTGCGTGCTGTAGATGTCAACATGAAC
AAAT
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