CN185879

Overview
NameCN185879
Unique NameCN185879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185879 vs. ExPASy Swiss-Prot
Match: DERL3_BOVIN (Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.007e-25
Identity = 59/142 (41.55%), Postives = 91/142 (64.08%), Query Frame = -3
Query:  312 NFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDPLGIIAGHLYYFLTVLHP-LATGKNLLKTPKWVQKLV 734
            +F   +L + RY   LE+G F  RTADF++M +FG + + +L  +     +FLG +L  MLVYVWSR  P  ++N +GL+T +A +LPWA++ L ++ G+ ++ D LGI  GH+YYFL  + P    GK LL TP +++ L+
Sbjct:   70 SFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSL--FFLGQALTAMLVYVWSRRSPGVRVNFFGLLTFQAPFLPWALMGLPMLLGNSILVDLLGIAVGHVYYFLEDVFPNQPGGKRLLLTPSFLKLLL 209          
BLAST of CN185879 vs. ExPASy Swiss-Prot
Match: DER22_ARATH (Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.546e-24
Identity = 61/152 (40.13%), Postives = 88/152 (57.89%), Query Frame = -3
Query:  309 INFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSL----LVLSAIPIFRS-----YFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDPLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVA 737
            ++F   +  +ARY   LE+  F  +TADFL+M++FGA  L    L+   IP   +      FL  SL FM+VYVWS++ P   ++  GL T  A YLPW +L   ++ G+    D LG+IAGH YYFL  ++P  T +  LKTP +++ L A
Sbjct:   68 LDFMFHMFFLARYCKLLEENSFRGKTADFLYMLLFGASVLTGIVLIGGMIPYLSASFAKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWVDLLGMIAGHAYYFLAEVYPRMTNRRPLKTPSFLKALFA 219          
BLAST of CN185879 vs. ExPASy Swiss-Prot
Match: DERL3_MOUSE (Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.672e-24
Identity = 57/141 (40.43%), Postives = 89/141 (63.12%), Query Frame = -3
Query:  312 FGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDPLGIIAGHLYYFLTVLHP-LATGKNLLKTPKWVQKLV 731
            F   +L + RY   LE+G F  R ADF++M +FG + + +L  +     +FLG +L+ MLVYVWSR  P+ ++N +GL+  +A +LPWA++   ++ G+ +V D LGI+ GH+YYFL  + P    GK LL TP  ++ L+
Sbjct:   71 FFFNMLFVFRYCRMLEEGSFRGRKADFVFMFLFGGVLMTLLGFLGSL--FFLGQALMAMLVYVWSRRSPHVRVNFFGLLNFQAPFLPWALMGFSLLLGNSVVTDLLGILVGHIYYFLEDVFPNQPGGKRLLLTPSVLKLLL 209          
BLAST of CN185879 vs. ExPASy Swiss-Prot
Match: DER21_ARATH (Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.675e-24
Identity = 60/152 (39.47%), Postives = 87/152 (57.24%), Query Frame = -3
Query:  309 INFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSL----LVLSAIPIF-----RSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDPLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVA 737
            ++F   +  +ARY   LE+  F  +T DFL+M++FGA  L    L+   IP       +  FL  SL FM+VYVWS++ P   ++  GL T  A YLPW +L   ++ G+    D LG+IAGH YYFL  ++P  T +  LKTP +++ L A
Sbjct:   68 LDFLFHMFFLARYCKLLEENSFRGKTTDFLYMLLFGATVLTGIVLIGGMIPYLSVSFSKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWGDFLGMIAGHAYYFLAFVYPRMTDRRPLKTPSFLKALFA 219          
BLAST of CN185879 vs. ExPASy Swiss-Prot
Match: DERL2_PONAB (Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.183e-21
Identity = 63/173 (36.42%), Postives = 95/173 (54.91%), Query Frame = -3
Query:  222 NFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSY-FLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDPLGIIAGHLYYFLTVLHPLATGK-NLLKTPKWVQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRL 734
            NF   ++ + RY   LE+G F  RTADF++M +FG     +++   +F S  FLG +   MLVYVWSR  P  ++N +GL+  +A +LPW ++   ++ G+ ++ D LGI  GH+Y+FL  + P   G   +LKTP  + K +       P  N    ER  G A+ G   RL
Sbjct:   70 NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGF---LMTLFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDVFPNQPGGIRILKTPS-ILKAIFDTPDEDPNYNPLPEERPGGFAW-GEGQRL 237          
BLAST of CN185879 vs. ExPASy Swiss-Prot
Match: DERL2_HUMAN (Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.183e-21
Identity = 63/173 (36.42%), Postives = 95/173 (54.91%), Query Frame = -3
Query:  222 NFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSY-FLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDPLGIIAGHLYYFLTVLHPLATGK-NLLKTPKWVQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRL 734
            NF   ++ + RY   LE+G F  RTADF++M +FG     +++   +F S  FLG +   MLVYVWSR  P  ++N +GL+  +A +LPW ++   ++ G+ ++ D LGI  GH+Y+FL  + P   G   +LKTP  + K +       P  N    ER  G A+ G   RL
Sbjct:   70 NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGF---LMTLFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDVFPNQPGGIRILKTPS-ILKAIFDTPDEDPNYNPLPEERPGGFAW-GEGQRL 237          
BLAST of CN185879 vs. ExPASy Swiss-Prot
Match: DERL2_MOUSE (Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.017e-21
Identity = 62/173 (35.84%), Postives = 95/173 (54.91%), Query Frame = -3
Query:  222 NFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSY-FLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDPLGIIAGHLYYFLTVLHPLATGK-NLLKTPKWVQKLVARWRIGAPAINRAQPERTTGVAFRGRSYRL 734
            NF   ++ + RY   LE+G F  RTADF++M +FG     +++   +F S  FLG +   MLVYVWSR  P  ++N +GL+  +A +LPW ++   ++ G+ ++ D LGI  GH+Y+FL  + P   G   +LKTP  + + +       P  N    ER  G A+ G   RL
Sbjct:   70 NFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGF---LMTLFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDIFPNQPGGIRILKTPS-ILRTIFDTPDEDPNYNPLPEERPGGFAW-GEGQRL 237          
BLAST of CN185879 vs. ExPASy Swiss-Prot
Match: DERL1_DICDI (Probable derlin-1 homolog OS=Dictyostelium discoideum GN=derl1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.145e-16
Identity = 46/141 (32.62%), Postives = 76/141 (53.90%), Query Frame = -3
Query:  315 FGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVI-FGSPLVPDPLGIIAGHLYYFLTVLHPLATG-KNLLKTPKWVQKL 731
            F   L+   +Y   LE   +  ++ D+L+ +IF ++  ++   I  F  YFLG   +  L+Y++SR  P    N YG  + K  YLPW  L    +  G P   D L I++GH++++LT ++P A G   L+KTPK++  +
Sbjct:   69 FLFNLIFFYQYTTRLESLNYAGKSDDYLFCIIFISICNIIFGLI--FEYYFLGTMTIMSLIYIYSRMNPTGTSNFYGFFSFKTIYLPWVFLVAHFLQTGHPPYSDFLAIVSGHIFFYLTDIYPRANGVPALIKTPKFITNI 207          
BLAST of CN185879 vs. ExPASy Swiss-Prot
Match: DERL1_HUMAN (Derlin-1 OS=Homo sapiens GN=DERL1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.266e-15
Identity = 50/179 (27.93%), Postives = 92/179 (51.40%), Query Frame = -3
Query:  216 IRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDPLGIIAGHLYYFLTVLHPL-ATGKNLLKTPKWVQKLVARWRIGA------PAINRAQPERTTGVAFR--GRSYRLSD 725
            + L  + +Y   LE G F+ R AD+L+M++F  + +++       +   L I L+  ++YVW++   +  ++ +     KA YLPW +L  + I G  ++ + +G + GHLY+FL   +P+   G+N L TP+++ + +   R G       PA  R   ++  G      G+ +RL D
Sbjct:   74 VNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQ--LLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGD 250          
BLAST of CN185879 vs. ExPASy Swiss-Prot
Match: DERL1_BOVIN (Derlin-1 OS=Bos taurus GN=DERL1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.266e-15
Identity = 50/179 (27.93%), Postives = 92/179 (51.40%), Query Frame = -3
Query:  216 IRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGSPLVPDPLGIIAGHLYYFLTVLHPL-ATGKNLLKTPKWVQKLVARWRIGA------PAINRAQPERTTGVAFR--GRSYRLSD 725
            + L  + +Y   LE G F+ R AD+L+M++F  + +++       +   L I L+  ++YVW++   +  ++ +     KA YLPW +L  + I G  ++ + +G + GHLY+FL   +P+   G+N L TP+++ + +   R G       PA  R   ++  G      G+ +RL D
Sbjct:   74 VNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQ--LLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGD 250          
The following BLAST results are available for this feature:
BLAST of CN185879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
DERL3_BOVIN3.007e-2541.55Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1[more]
DER22_ARATH2.546e-2440.13Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 ... [more]
DERL3_MOUSE5.672e-2440.43Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1[more]
DER21_ARATH9.675e-2439.47Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 ... [more]
DERL2_PONAB1.183e-2136.42Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1[more]
DERL2_HUMAN1.183e-2136.42Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1[more]
DERL2_MOUSE2.017e-2135.84Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2[more]
DERL1_DICDI1.145e-1632.62Probable derlin-1 homolog OS=Dictyostelium discoid... [more]
DERL1_HUMAN1.266e-1527.93Derlin-1 OS=Homo sapiens GN=DERL1 PE=1 SV=1[more]
DERL1_BOVIN1.266e-1527.93Derlin-1 OS=Bos taurus GN=DERL1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185879 ID=CN185879; Name=CN185879; organism=Citrus sinensis; type=EST; length=748bp
TTTTTTTTTTTTTTTTGCATCGCAATCTTGATGTTAAAAGTTTTTCCTTT
TACGCTCTACAAATCAATTTTTTGGTGAAGCAATAGTCCCTAACAATCTG
TAAAATGTGAAAATGAAACTTCTTGAACTGTCAGCTCTTCTGGGTTGAAG
GCTTTGCTGCCTTTGTCAGGTGCATCACCTGGAAAAATTACAAGAACGTT
GCCATATTATAATCAATCGCTTAAACGATATGATCTTCCTCTGAAAGCCA
CACCAGTTGTCCTTTCAGGCTGGGCACGATTGATAGCTGGAGCTCCGATT
CTCCACCTCGCCACCAGTTTTTGTACCCATTTTGGAGTCTTCAACAAGTT
CTTTCCAGTTGCAAGTGGATGTAAGACAGTCAAAAAGTAATACAGATGTC
CTGCTATGATTCCCAGCGGGTCTGGTACAAGGGGTGAACCAAAAATGACG
TCCAAAGCAAGCATAGCCCATGGTAGATAAAATGCCTTAAGTGTCACGAG
GCCATATATATTGATCTGAGAATTTGGGAATTCTCTACTCCAGACATAGA
CAAGCATAAAAACAAGTGATATCCCTAGGAAATAAGATCGAAATATGGGG
ATGGCTGACAACACCAACAGAGATAAGGCTCCAAAAATCATCATCCATAA
AAAATCTGCTGTACGCCTTTCAAATGGTCCCTTCTCCAGGTTAACTCCAT
ATCTCGCTATCATCAAAAGGCGAATCCCAAAATTGATTGAAAAAGTTC
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