CN185878

Overview
NameCN185878
Unique NameCN185878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATV_NPVCF (Viral cathepsin OS=Choristoneura fumiferana nuclear polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.998e-29
Identity = 70/178 (39.33%), Postives = 102/178 (57.30%), Query Frame = 2
Query:  209 FEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            FE +  K  K+Y++  EK +RF+IF+ NL  I   N  + T +  +N+FADL+ +E  S Y G     +  +         L R  +  P   DWR+   V  VK+QG CG+CWAF+T+ ++E    I     I+LSEQ+L+DCD   + GC+GGL+  AFE +++ GGI  E DYPY
Sbjct:   28 FEDFLHKFNKSYSSESEKLRRFQIFRHNLEEIINKNHNDSTAQYEINKFADLSKDETISKYTGLSLPLQTQNFCEVV---VLDRPPDKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNQFINLSEQQLIDCD-FVDAGCDGGLLHTAFEAVMNMGGIQAESDYPY 201          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.609e-29
Identity = 80/221 (36.20%), Postives = 114/221 (51.58%), Query Frame = 2
Query:   95 LLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSE----NRTYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDC-DTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            +LFL  +   +D +  + D + + + + WRT             KHGKAYN + E+  R  +++ N + I+ HN E       + + +N F DLTN E+  M  G R        K KR   +       +P  VDWR  G V  VK+QG C S WAFS   ++EG     TG L+ LSEQ L+DC  ++    C+GG M  AF+++ DNGG+ TEE YPY
Sbjct:    4 VLFLAILCLEIDSTAPTLDPSLDVQWNEWRT-------------KHGKAYN-VNEERLRRAVWEKNFKMIELHNWEYLEGKHDFTMTMNAFGDLTNTEFVKMMTGFR------RQKIKRMHVFQDHQFLYVPKYVDWRMLGYVTPVKNQGYCASSWAFSATGSLEGQMFKKTGRLVPLSEQNLLDCMGSNVTHDCSGGFMQNAFQYVKDNGGLATEESYPY 204          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATV_NPVLD (Viral cathepsin OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.450e-29
Identity = 73/183 (39.89%), Postives = 105/183 (57.38%), Query Frame = 2
Query:  209 FEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSE-----NRTYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            FE++   + K Y +  EK KR+ IFKDNL  I+  N         TYK+  N+F+DL+  E  + + G     + ++          P  G   P   DWR++  V  +K+QG+CG+CWAF+T+A+VE    +    LI LSEQ+L+DCD S + GCNGGL+  AFE I+  GG+ TE DYP+
Sbjct:   56 FESFVENYNKNYTSDWEKNKRYSIFKDNLHEINAKNGNATDGPTATYKI--NKFSDLSKSELIAKFTGLSIPERVSNFCKTIILNQPPDKG---PLHFDWREQNKVTSIKNQGACGACWAFATLASVESQFAMRHNRLIDLSEQQLIDCD-SVDMGCNGGLLHTAFEEIMRMGGVQTELDYPF 232          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATV_NPVHC (Viral cathepsin OS=Hyphantria cunea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.450e-29
Identity = 70/178 (39.33%), Postives = 102/178 (57.30%), Query Frame = 2
Query:  209 FEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            FE +  K  K Y++  EK +RF+IF+ NL  I   N  + T +  +N+F+DL+ +E  S Y G     +  +         L R  +  P   DWR+   V  VK+QG CG+CWAF+T+A++E    I    LI+LSEQ+L+DCD   + GCNGGL+  A+E ++  GG+  E DYPY
Sbjct:   28 FEDFLHKFNKHYSSESEKLRRFQIFQHNLEEIIIKNQNDTTAQYEINKFSDLSKDETISKYTGLALPLQTQNFCEVV---VLNRPPDKGPLEFDWRRLNKVTSVKNQGICGACWAFATLASLESQFAIKHNQLINLSEQQLIDCD-YVDAGCNGGLLHTAYEAVMQMGGVQAENDYPY 201          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.914e-29
Identity = 71/190 (37.37%), Postives = 105/190 (55.26%), Query Frame = 2
Query:  188 DDEVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVG----LNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            D  +   ++ W  K+ K+Y+ + E+ KR  ++++NL+ I  HN EN   K G    +N FAD T EE+R         A  T+  +++      +V   LP+  DWRK+G V  V++QG CGSCWAF+ + A+EG     TG+L  LS Q L+DC  S  N GC  G    AF +++ N G++ E  YPY
Sbjct:   22 DPNLDAEWQDWKTKYAKSYSPVEEELKR-AVWEENLKMIQLHNKENGLGKNGFTMEMNAFADTTGEEFRKSLSDILIPAAVTNPSAQK------QVSIGLPNFKDWRKEGYVTPVRNQGKCGSCWAFAAVGAIEGQMFSKTGNLTPLSVQNLLDCSKSEGNNGCRWGTAHQAFNYVLKNKGLEAEATYPY 204          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATV_NPVAP (Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.691e-28
Identity = 68/178 (38.20%), Postives = 103/178 (57.87%), Query Frame = 2
Query:  209 FEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            FE +  K  K Y++  EK +RF+IF+ NL  I   N  + + +  +N+F+DL+ +E  S Y G     ++ +         L R  +  P   DWR+   V  VK+QG CG+CWAF+T+ ++E    I    LI+LSEQ+L+DCD   + GC+GGL+  A+E +++ GGI  E DYPY
Sbjct:   28 FEEFLHKFNKNYSSESEKLRRFKIFQHNLEEIINKNQNDTSAQYEINKFSDLSKDETISKYTGLSLPLQKQNFCEVV---VLDRPPDKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDCD-FVDVGCDGGLLHTAYEAVMNMGGIQAENDYPY 201          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATQ_RAT (Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.691e-28
Identity = 71/188 (37.77%), Postives = 104/188 (55.32%), Query Frame = 2
Query:  209 FEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSEN----RTYKVGLNRFADLTNEEYRSMYLGARFGAKRTS--LKSKRSDRYLPRVG---EALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            ++ W +K+ K Y+   E  KR  ++++N++ I+ HN EN     TY + +N FAD+T+EE++ M +G +     T   L  +    + P      +ALP  VDWR +G V  V+ QG C SCWAF    A+EG     TG LI LS Q L+DC     N GC  G    AF++++ NGG++ E  YPY
Sbjct:   29 WQEWKIKYEKLYSPEEEVLKRV-VWEENVKKIELHNRENSLGKNTYTMEINDFADMTDEEFKDMIIGFQLPVHNTEKRLWKRALGSFFPNSWNWRDALPKFVDWRNEGYVTRVRKQGGCSSCWAFPVTGAIEGQMFKKTGKLIPLSVQNLIDCSKPQGNRGCLWGNTYNAFQYVLHNGGLEAEATYPY 215          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.691e-28
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = 2
Query:  476 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCD-TSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            P SVDWR+KG V  VKDQG CGSCWAFST  A+EG +    G L+SLSEQ LVDC     N+GCNGGLMD AF+++ DNGGID+EE YPY
Sbjct:    2 PRSVDWREKGYVTPVKDQGQCGSCWAFSTTGALEGQHFRTKGKLVSLSEQNLVDCSRPEGNQGCNGGLMDQAFQYVQDNGGIDSEESYPY 91          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: MEX2_JACME (Chymomexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.884e-28
Identity = 56/89 (62.92%), Postives = 69/89 (77.53%), Query Frame = 2
Query:  476 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            P+S+DWR KGAV  VK+Q  CGSCWAFST+A VEGINKI TG LISLSEQEL+DCD   + GC GG    + +++ DNGG+ TE++YPY
Sbjct:    2 PESIDWRDKGAVTPVKNQNPCGSCWAFSTVATVEGINKIRTGKLISLSEQELLDCDRR-SHGCKGGYQTGSIQYVADNGGVHTEKEYPY 89          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATV_NPVST (Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.767e-28
Identity = 74/223 (33.18%), Postives = 120/223 (53.81%), Query Frame = 2
Query:   89 MFLLFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMYLGA---RFGAKRTSLKSKRSDRYLPRVGEAL--PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            M+L++ +T+ +    SI +    ++  S+S          +E +  +H K Y    +++  F  FK NL  ++  N+ +     G+N+F+D+    + + + G       +  ++    R   Y+   G +   P+S DWRK   V +VK+QG CGSCWAF+ I  +E    I+  SLI LSEQ+L+DCD   ++GC+GGLM  AF+ II  GG++ E DYPY
Sbjct:    1 MYLIYYYTIIAVATASIANEKIFYDIDSASV--------YYENFIKQHNKEYTTPDQRDAAFVNFKRNLADMNAMNNVSNQAVYGINKFSDIDKITFVNEHAGLVSNLINSTDSNFDPYRLCEYVTVAGPSARTPESFDWRKLNKVTKVKEQGVCGSCWAFAAIGNIESQYAIMHDSLIDLSEQQLLDCD-RVDQGCDGGLMHLAFQEIIRIGGVEHEIDYPY 214          
The following BLAST results are available for this feature:
BLAST of CN185878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
CATV_NPVCF1.998e-2939.33Viral cathepsin OS=Choristoneura fumiferana nuclea... [more]
TEST2_MOUSE2.609e-2936.20Testin-2 OS=Mus musculus PE=2 SV=1[more]
CATV_NPVLD4.450e-2939.89Viral cathepsin OS=Lymantria dispar multicapsid nu... [more]
CATV_NPVHC4.450e-2939.33Viral cathepsin OS=Hyphantria cunea nuclear polyhe... [more]
CATJ_RAT9.914e-2937.37Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]
CATV_NPVAP1.691e-2838.20Viral cathepsin OS=Antheraea pernyi nuclear polyhe... [more]
CATQ_RAT1.691e-2837.77Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1[more]
CATL1_CHICK1.691e-2865.56Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
MEX2_JACME2.884e-2862.92Chymomexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CATV_NPVST3.767e-2833.18Viral cathepsin OS=Spodoptera litura multicapsid n... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185878 ID=CN185878; Name=CN185878; organism=Citrus sinensis; type=EST; length=742bp
GCGTTATCAATCCATCTTCTTCTCCCAAAAAGAAAAAAAAAAGCTCTTTT
CTCCAAAGATGGGTTTGTTCAGATCACCAACCATGGCCATGTTTTTACTT
TTTCTCTTCACTGTATCATCTGCCTTGGACATGTCGATTGTATCTTATGA
TAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGATGAGGTTA
TGGGTATGTTCGAGGCCTGGTTTGTGAAGCATGGCAAGGCTTATAACGCT
TTGGGTGAAAAAGAGAAAAGGTTTGAGATCTTTAAGGACAATCTTAGGTT
TATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGGGTTGAACC
GGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGTATCTGGGTGCA
CGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCGATCGTTA
TCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGAAGA
AAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGCTGG
GCATTTTCAACCATTGCTGCTGTAGAGGGTATAAACAAGATTGTTACAGG
TAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACATCAT
ATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTTCATT
ATTGATAATGGAGGTATTGACACAGAAGAAGATTACCCCTAC
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