CN185878

Overview
NameCN185878
Unique NameCN185878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATV_NPVOP (Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.767e-28
Identity = 70/178 (39.33%), Postives = 99/178 (55.62%), Query Frame = 2
Query:  209 FEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            FE +  K  K Y++  EK  RF+IF+ NL  I   N  + T +  +N+F+DL+ EE  S Y G     +  +         L R  +  P   DWR+   V  VK+QG CG+CWAF+T+ ++E    I    LI+LSEQ+ +DCD   N GC+GGL+  AFE  ++ GG+  E DYPY
Sbjct:   28 FEDFLHKFNKNYSSESEKLHRFKIFQHNLEEIINKNQNDSTAQYEINKFSDLSKEEAISKYTGLSLPHQTQNFCEVV---ILDRPPDRGPLEFDWRQFNKVTSVKNQGVCGACWAFATLGSLESQFAIKYNRLINLSEQQFIDCD-RVNAGCDGGLLHTAFESAMEMGGVQMESDYPY 201          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATR_MOUSE (Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.920e-28
Identity = 71/190 (37.37%), Postives = 100/190 (52.63%), Query Frame = 2
Query:  188 DDEVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVG----LNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            D  +   ++ W +K+ K+Y+   EK KR  ++++ L+ I  HN EN   K G    +N F D T+EE+R M +       R      + +      G  LP  VDWRKKG V  V+ QG C +CWAF+   A+E      TG L  LS Q LVDC     N GC GG    AF++++ NGG+++E  YPY
Sbjct:   22 DSSLDAEWQDWKIKYNKSYSLKEEKLKRV-VWEEKLKMIKLHNRENSLGKNGFTMKMNEFGDQTDEEFRKMMIEISVWTHREGKSIMKRE-----AGSILPKFVDWRKKGYVTPVRRQGDCDACWAFAVTGAIEAQAIWQTGKLTPLSVQNLVDCSKPQGNNGCLGGDTYNAFQYVLHNGGLESEATYPY 205          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.426e-28
Identity = 71/184 (38.59%), Postives = 105/184 (57.07%), Query Frame = 2
Query:  206 MFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENR-TYKVGLNRFADLTNEEYRSMYLGARF----GAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            +F+ +   + + Y +  E + R  +F  N+    +  + +R T + G+ +F+DLT EE+ ++YL        G K +  KS         + +  P   DWRKKGAV EVK+QG CGSCWAFS    VEG   +  G+L+SLSEQEL+DCD   ++ C GGL   A+  I + GG++TE+DY Y
Sbjct:  164 LFKDFMTTYNRTYESREEAQWRLTVFARNMIRAQKIQALDRGTAQYGITKFSDLTEEEFHTIYLNPLLQKESGRKMSPAKS---------INDLAPPEWDWRKKGAVTEVKNQGMCGSCWAFSVTGNVEGQWFLNRGTLLSLSEQELLDCD-KVDKACLGGLPSNAYAAIKNLGGLETEDDYGY 337          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: ACP1_ENTHI (Cysteine proteinase ACP1 OS=Entamoeba histolytica GN=ACP1 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 74/180 (41.11%), Postives = 100/180 (55.56%), Query Frame = 2
Query:  209 FEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEH-NSENRTYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEG-INKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            F+ W   H K +    E   RF +F DN +F++ + N+E       LN FAD+T+EE+   +LG  +    T+   K + +       A P+SVDWR    +   KDQG CGSCW F T A +EG +NK + G L S SEQ+LVDCD S N GC GG    + +FI +N G+  E DYPY
Sbjct:   18 FKQWAATHNKVFANRAEYLYRFAVFLDNKKFVEANANTE-------LNVFADMTHEEFIQTHLGMTYEVPETTSNVKAAVK-------AAPESVDWRS--IMNPAKDQGQCGSCWTFCTTAVLEGRVNKDL-GKLYSFSEQQLVDCDASDN-GCEGGHPSNSLKFIQENNGLGLESDYPY 179          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATV_NPVAC (Viral cathepsin OS=Autographa californica nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.096e-27
Identity = 71/178 (39.89%), Postives = 101/178 (56.74%), Query Frame = 2
Query:  209 FEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            FE +  +  K Y +  EK +RF+IF+ NL  I   N +N + K  +N+F+DL+ +E  + Y G     +  +          P  G   P   DWR+   V  VK+QG CG+CWAF+T+A++E    I    LI+LSEQ+++DCD   + GCNGGL+  AFE II  GG+  E DYPY
Sbjct:   28 FEEFVHRFNKDYGSEVEKLRRFKIFQHNLNEIINKN-QNDSAKYEINKFSDLSKDETIAKYTGLSLPIQTQNFCKVIVLDQPPGKG---PLEFDWRRLNKVTSVKNQGMCGACWAFATLASLESQFAIKHNQLINLSEQQMIDCD-FVDAGCNGGLLHTAFEAIIKMGGVQLESDYPY 200          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.096e-27
Identity = 74/174 (42.53%), Postives = 102/174 (58.62%), Query Frame = 2
Query:  224 VKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKV-GLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            +K+ K Y+   E E RF IFK N+     +    R   + G+  ++DLT +E+   +L A +    +   +  S   L +    +P + DWR+KGAV EVK+QG CGSCWAFST   VE      TG L+SLSEQ+LVDCD   ++GCNGGL   A+E II  GG+  E++YPY
Sbjct:   25 LKYRKQYHET-EDEIRFNIFKSNILKAQLYQVFVRGSAIYGVTPYSDLTTDEFARTHLTASWVVPSSRSNTPTS---LGKEVNNIPKNFDWREKGAVTEVKNQGMCGSCWAFSTTGNVESQWFRKTGKLLSLSEQQLVDCD-GLDDGCNGGLPSNAYESIIKMGGLMLEDNYPY 193          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATL1_PARTE (Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT00020990001 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.096e-27
Identity = 70/188 (37.23%), Postives = 105/188 (55.85%), Query Frame = 2
Query:  194 EVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDE--HNSENRTYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDW--RKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            +   ++  W +K+ + Y    ++  R+++F DNL +I     + E  T+ + LN+FAD++ +E+   YL  +    RT+  +  +  +  +  E     VDW   KK     VK+QGSCGSCWAFS + A+E    I       LSEQ+LVDC   Y N+GCNGG MD AFE++ DN G+   +DYPY
Sbjct:   21 DTANLYANWKMKYNRRYTNQRDEMYRYKVFTDNLNYIRAFYESPEEATFTLELNQFADMSQQEFAQTYLSLK--VPRTAKLNAANSNFQYKGAE-----VDWTDNKKVKYPAVKNQGSCGSCWAFSAVGALEINTDIELNRKYELSEQDLVDCSGPYDNDGCNGGWMDSAFEYVADN-GLAEAKDYPY 200          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATV_NPVBS (Viral cathepsin OS=Buzura suppressaria nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.432e-27
Identity = 67/178 (37.64%), Postives = 98/178 (55.06%), Query Frame = 2
Query:  209 FEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            FE +   + K YN   EKE+RF IF+  L  I+  N  N +    +N+FADL+  E  S Y G     + T+          P  G   P + DWR++  V  +K+Q +CG+CWAF+T+A++E    I     I LSEQ+++DCD   + GC+GGL+  AFE +I  G +  E +YPY
Sbjct:   31 FETFLANYNKMYNDTSEKERRFSIFQQTLEEINYKNRLNDSAVYQINKFADLSKNEIISKYTGLNMPVQTTNFCKTIVIDQPPGKG---PLNFDWRQQNKVTSIKNQKACGACWAFATLASIESQYAIKNNVHIDLSEQQMIDCD-YVDMGCDGGLLHTAFEQMIQMGELVQEHEYPY 204          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATV_NPVHZ (Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27
Identity = 72/191 (37.70%), Postives = 103/191 (53.93%), Query Frame = 2
Query:  209 FEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSEN------------RTYKVGLNRFADLTNEEYRSMYLGARFG-AKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            F+ +  ++ K+Y+   E + R+ +FKDNL  I+  N EN             + + G+N+F+D T +E      G     ++  +L   R  +  P +   LPD  DWR    V  +KDQG CGSCWAF  I  +E    I    LI LSEQ+L+DCD   + GCNGGLM  AF+ ++  GG++TE DYPY
Sbjct:   57 FKHFLQQYNKSYDDPKEYQYRYNVFKDNLNKINSQNRENLLNNKNNNDSLSTSAQFGVNKFSDKTPDEVLHSNTGFFLNLSQHYTLCENRIVKGAPDI--RLPDYYDWRDTNKVTPIKDQGVCGSCWAFVAIGNIESQYAIRHNKLIDLSEQQLLDCD-EVDLGCNGGLMHLAFQELLLMGGVETEADYPY 244          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATV_NPVBM (Viral cathepsin OS=Bombyx mori nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.870e-27
Identity = 70/178 (39.33%), Postives = 101/178 (56.74%), Query Frame = 2
Query:  209 FEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            FE +  +  K Y++  EK +RF+IF+ NL  I   N +N + K  +N+F+DL+ +E  + Y G     +  +          P  G   P   DWR+   V  VK+QG CG+CWAF+T+ ++E    I    LI+LSEQ+++DCD   + GCNGGL+  AFE II  GG+  E DYPY
Sbjct:   28 FEEFVHRFNKNYSSEVEKLRRFKIFQHNLNEIINKN-QNDSAKYEINKFSDLSKDETIAKYTGLSLPTQTQNFCKVILLDQPPGKG---PLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNELINLSEQQMIDCD-FVDAGCNGGLLHTAFEAIIKMGGVQLESDYPY 200          
The following BLAST results are available for this feature:
BLAST of CN185878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
CATV_NPVOP3.767e-2839.33Viral cathepsin OS=Orgyia pseudotsugata multicapsi... [more]
CATR_MOUSE4.920e-2837.37Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1[more]
CATF_MOUSE6.426e-2838.59Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
ACP1_ENTHI8.393e-2841.11Cysteine proteinase ACP1 OS=Entamoeba histolytica ... [more]
CATV_NPVAC1.096e-2739.89Viral cathepsin OS=Autographa californica nuclear ... [more]
CATL_SCHMA1.096e-2742.53Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CATL1_PARTE1.096e-2737.23Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT0... [more]
CATV_NPVBS1.432e-2737.64Viral cathepsin OS=Buzura suppressaria nuclear pol... [more]
CATV_NPVHZ1.870e-2737.70Viral cathepsin OS=Heliothis zea nuclear polyhedro... [more]
CATV_NPVBM1.870e-2739.33Viral cathepsin OS=Bombyx mori nuclear polyhedrosi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185878 ID=CN185878; Name=CN185878; organism=Citrus sinensis; type=EST; length=742bp
GCGTTATCAATCCATCTTCTTCTCCCAAAAAGAAAAAAAAAAGCTCTTTT
CTCCAAAGATGGGTTTGTTCAGATCACCAACCATGGCCATGTTTTTACTT
TTTCTCTTCACTGTATCATCTGCCTTGGACATGTCGATTGTATCTTATGA
TAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGATGAGGTTA
TGGGTATGTTCGAGGCCTGGTTTGTGAAGCATGGCAAGGCTTATAACGCT
TTGGGTGAAAAAGAGAAAAGGTTTGAGATCTTTAAGGACAATCTTAGGTT
TATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGGGTTGAACC
GGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGTATCTGGGTGCA
CGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCGATCGTTA
TCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGAAGA
AAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGCTGG
GCATTTTCAACCATTGCTGCTGTAGAGGGTATAAACAAGATTGTTACAGG
TAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACATCAT
ATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTTCATT
ATTGATAATGGAGGTATTGACACAGAAGAAGATTACCCCTAC
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