CN185878

Overview
NameCN185878
Unique NameCN185878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CYSP_PLAFA (Trophozoite cysteine proteinase OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.415e-21
Identity = 61/187 (32.62%), Postives = 97/187 (51.87%), Query Frame = 2
Query:  209 FEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHN--SENRTYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLK-SKRSDRYLPR-----------------VGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDN 709
            F  +  +H K Y  + E+ ++FEIFK N   I  HN  ++N  YK  +N+F+D + EE +  +            K SK  + +L                   +   +P+ +D+R+KG V E KDQG CGSCWAF+++  +E +      +++S SEQE+VDC    N GC+GG   Y+F +++ N
Sbjct:  225 FFKFMKEHNKVYKNIDEQMRKFEIFKINYISIKNHNKLNKNAMYKKKVNQFSDYSEEELKEYFKTLLHVPNHMIEKYSKPFENHLKDNILISEFYTNGKRNEKDIFSKVPEILDYREKGIVHEPKDQGLCGSCWAFASVGNIESVFAKKNKNILSFSEQEVVDCSKD-NFGCDGGHPFYSFLYVLQN 410          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CYSP_THEPA (Cysteine proteinase OS=Theileria parva GN=TP03_0285 PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 63/200 (31.50%), Postives = 100/200 (50.00%), Query Frame = 2
Query:  194 EVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMYL-----GARFGAKRTSLKSKRSDRYLPRVGEALP------------DSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            EV   FE +  K+ + +    E+  R   F+ N   + E   +   Y  G+NRF+DLT  E+  ++       A +      L    +  YL  + +AL             +++DWR+  +V  VKDQ +CG CWAFST+ +VEG           LS QEL+DCD S++ GC GGL++ A+E+ +   G+ + +D P+
Sbjct:  120 EVYREFEEFNSKYNRRHATQQERLNRLVTFRSNYLEVKEQKGDE-PYVKGINRFSDLTEREFYKLFPVMKPPKATYSNGYYLLSHMANKTYLKNLKKALNTDEDVDLAKLTGENLDWRRSSSVTSVKDQSNCGGCWAFSTVGSVEGYYMSHFDKSYELSVQELLDCD-SFSNGCQGGLLESAYEY-VRKYGLVSAKDLPF 316          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATW_MOUSE (Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 60/185 (32.43%), Postives = 102/185 (55.14%), Query Frame = 2
Query:  194 EVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENR-TYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRK-KGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            E+  +F+ + ++  ++Y    E  +R  IF  NL        E+  T + G   F+DLT EE+  +Y G     +RT   +K+ +      GE++P + DWRK K  ++ VK+QGSC  CWA +    ++ + +I     + +S QEL+DC+   N GCNGG +  A+  +++N G+ +E+DYP+
Sbjct:   35 ELKEVFKLFQIRFNRSYWNPAEYTRRLSIFAHNLAQAQRLQQEDLGTAEFGETPFSDLTEEEFGQLY-GQERSPERTPNMTKKVESNT--WGESVPRTCDWRKAKNIISSVKNQGSCKCCWAMAAADNIQALWRIKHQQFVDVSVQELLDCERCGN-GCNGGFVWDAYLTVLNNSGLASEKDYPF 215          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.891e-20
Identity = 63/200 (31.50%), Postives = 105/200 (52.50%), Query Frame = 2
Query:  173 SSWRTDD------EVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENR-TYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYL--PRVGEALPDSVDWRK-KGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            SS R+ D      E+   F  + +++ ++Y+   E  +R +IF  NL    +   E+  T + G+  F+DLT EE+  +Y     G +R   ++ +  R +     GE++P + DWRK  G ++ VK Q SC  CWA +    +E +  I     + LS QEL+DC     +GC GG +  AF  +++N G+ +E+DYP+
Sbjct:   24 SSLRSQDPGPQPLELKQAFTLFQIQYNRSYSNPEEYARRLDIFAHNLAQAQQLEEEDLGTAEFGVTPFSDLTEEEFGRLY-----GHRRMDGEAPKVGREVGSEEWGESVPPTCDWRKLDGVISSVKKQESCSCCWAMAAAGNIEALWAIKYRQSVELSVQELLDCGRC-GDGCRGGFVWDAFITVLNNSGLASEKDYPF 217          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: BROM2_ANACO (Stem bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.776e-20
Identity = 49/91 (53.85%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  470 ALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            A+P S+DWR  GAV  VK+Q  CG+CWAF+ IA VE I KI  G L  LSEQ+++DC   Y  GC GG    AFEFII N G+ +   YPY
Sbjct:    1 AVPQSIDWRDYGAVTSVKNQNPCGACWAFAAIATVESIYKIKKGILEPLSEQQVLDCAKGY--GCKGGWEFRAFEFIISNKGVASGAIYPY 89          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATW_HUMAN (Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.453e-19
Identity = 58/185 (31.35%), Postives = 97/185 (52.43%), Query Frame = 2
Query:  194 EVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENR-TYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRK-KGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            E+   F+ + ++  ++Y +  E   R +IF  NL        E+  T + G+  F+DLT EE+  +Y G R  A       +      P   E++P S DWRK   A++ +KDQ +C  CWA +    +E + +I     + +S QEL+DC     +GC+GG +  AF  +++N G+ +E+DYP+
Sbjct:   37 ELKEAFKLFQIQFNRSYLSPEEHAHRLDIFAHNLAQAQRLQEEDLGTAEFGVTPFSDLTEEEFGQLY-GYRRAAGGVPSMGREIRSEEPE--ESVPFSCDWRKVASAISPIKDQKNCNCCWAMAAAGNIETLWRISFWDFVDVSVQELLDCGRC-GDGCHGGFVWDAFITVLNNSGLASEKDYPF 217          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CYSP_PLAVN (Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.706e-18
Identity = 67/206 (32.52%), Postives = 102/206 (49.51%), Query Frame = 2
Query:  167 KSSSWRTDDEVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNS----ENRTYKVGLNRFADLTNEEYRSMY---LGARFGAKR---TSLKSKRSDRYLPRV---GEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSL-ISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            K  S + + +    F  +  ++ K Y  + E+ +RFE FK       +HN        TY   +N+++D + EE+ + +   L      K      LK   ++  L  V    +  PDS D+R K      KDQG+CGSCWAF+ I   E +       + IS SEQ++VDC T  N GC+GG   YAF ++I+N G+   ++YPY
Sbjct:  148 KLESMQDNIKYASKFFKYMKENNKKYENMDEQLQRFENFKIRYMKTQKHNEMVGKNGLTYVQKVNQYSDFSKEEFDNYFKKLLSVPMDLKSKYIVPLKKHLANTNLISVDNKSKDFPDSRDYRSKFNFLPPKDQGNCGSCWAFAAIGNFEYLYVHTRHEMPISFSEQQMVDCSTE-NYGCDGGNPFYAFLYMINN-GVCLGDEYPY 351          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATO_MOUSE (Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.103e-17
Identity = 56/158 (35.44%), Postives = 84/158 (53.16%), Query Frame = 2
Query:  203 GMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMYLGARFG-AKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGG 673
            G+   W   H +   AL E   R        R+++    EN T   G+N+F+ L  EE++++YLG+++  A R   + +R    +P V  +LP   DWR K  V  V++Q  CG CWAFS ++A+E    I   SL  LS Q+++DC  + N GC GG
Sbjct:   20 GVAGTWSWSHQREAAALRESLHRH-------RYLNSFPHENSTAFYGVNQFSYLFPEEFKALYLGSKYAWAPRYPAEGQRP---IPNV--SLPLRFDWRDKHVVNPVRNQEMCGGCWAFSVVSAIESARAIQGKSLDYLSVQQVIDCSFN-NSGCLGG 164          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: PEPT1_DERFA (Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.308e-16
Identity = 54/180 (30.00%), Postives = 87/180 (48.33%), Query Frame = 2
Query:  209 FEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMYL--GARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEEDYPY 742
            FE +     K Y  + E+E   + F ++L++++ +       K  +N  +DL+ +E+++ YL     F   +T                 +P  +D R    V  ++ QG CGSCWAFS +AA E        + + LSEQELVDC + +  GC+G  +    E+I  NG ++ E  YPY
Sbjct:   26 FEEFKKAFNKNYATVEEEEVARKNFLESLKYVEAN-------KGAINHLSDLSLDEFKNRYLMSAEAFEQLKTQFDLNAETSACRINSVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCASQH--GCHGDTIPRGIEYIQQNGVVE-ERSYPY 195          
BLAST of CN185878 vs. ExPASy Swiss-Prot
Match: CATO_HUMAN (Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15
Identity = 53/143 (37.06%), Postives = 80/143 (55.94%), Query Frame = 2
Query:  260 KEKRFEIFKDNL---RFIDE-HNSENRTYKVGLNRFADLTNEEYRSMYLGARFGAKRTSLKSKRSDRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNE-GCNGG 673
            +E+    F+++L   R+++    SEN T   G+N+F+ L  EE++++YL ++    +    S      +P V  +LP   DWR K  V +V++Q  CG CWAFS + AVE    I    L  LS Q+++DC  SYN  GCNGG
Sbjct:   37 REREAAAFRESLNRHRYLNSLFPSENSTAFYGINQFSYLFPEEFKAIYLRSK--PSKFPRYSAEVHMSIPNV--SLPLRFDWRDKQVVTQVRNQQMCGGCWAFSVVGAVESAYAIKGKPLEDLSVQQVIDC--SYNNYGCNGG 173          
The following BLAST results are available for this feature:
BLAST of CN185878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
CYSP_PLAFA3.415e-2132.62Trophozoite cysteine proteinase OS=Plasmodium falc... [more]
CYSP_THEPA4.460e-2131.50Cysteine proteinase OS=Theileria parva GN=TP03_028... [more]
CATW_MOUSE4.460e-2132.43Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1[more]
CATW_FELCA2.891e-2031.50Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]
BROM2_ANACO3.776e-2053.85Stem bromelain OS=Ananas comosus PE=1 SV=1[more]
CATW_HUMAN5.453e-1931.35Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2[more]
CYSP_PLAVN2.706e-1832.52Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=... [more]
CATO_MOUSE5.103e-1735.44Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1[more]
PEPT1_DERFA3.308e-1630.00Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 P... [more]
CATO_HUMAN2.800e-1537.06Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185878 ID=CN185878; Name=CN185878; organism=Citrus sinensis; type=EST; length=742bp
GCGTTATCAATCCATCTTCTTCTCCCAAAAAGAAAAAAAAAAGCTCTTTT
CTCCAAAGATGGGTTTGTTCAGATCACCAACCATGGCCATGTTTTTACTT
TTTCTCTTCACTGTATCATCTGCCTTGGACATGTCGATTGTATCTTATGA
TAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGATGAGGTTA
TGGGTATGTTCGAGGCCTGGTTTGTGAAGCATGGCAAGGCTTATAACGCT
TTGGGTGAAAAAGAGAAAAGGTTTGAGATCTTTAAGGACAATCTTAGGTT
TATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGGGTTGAACC
GGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGTATCTGGGTGCA
CGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCGATCGTTA
TCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGAAGA
AAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGCTGG
GCATTTTCAACCATTGCTGCTGTAGAGGGTATAAACAAGATTGTTACAGG
TAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACATCAT
ATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTTCATT
ATTGATAATGGAGGTATTGACACAGAAGAAGATTACCCCTAC
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