CN185876

Overview
NameCN185876
Unique NameCN185876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185876 vs. ExPASy Swiss-Prot
Match: NTF2_XENLA (Nuclear transport factor 2 OS=Xenopus laevis GN=ntf2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.989e-17
Identity = 50/117 (42.74%), Postives = 74/117 (63.25%), Query Frame = 2 
Query:   86 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 436
            + +  +F++ YY TFDA+RT LA +Y + S LT+EGQ+  G   IV KL+ LPFQ+ QHSIT+ D QP+ P   ++  V G L+ A +   + F Q+F L+   Q ++   ND+FRL
Sbjct:    8 EQIGASFIQQYYQTFDADRTQLAVIYTDASCLTWEGQQYHGKAAIVEKLSLLPFQKIQHSITSQDHQPT-PDSCIISMVVGQLK-ADDDPIMGFHQVF-LLKNIQDAWVCTNDMFRL 121
The following BLAST results are available for this feature:
BLAST of CN185876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NTF2_XENLA5.989e-1742.74Nuclear transport factor 2 OS=Xenopus laevis GN=nt... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002A02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185876 ID=CN185876; Name=CN185876; organism=Citrus sinensis; type=EST; length=699bp
AGGCTCAAGCGGAAACAGCAAACGCAAAATTCGAAAAGAGAGGCAGGGGT
AGGAGGGGATTTTGAAATTCAATCAGATGGATCCAGACTCAGTGGCTAAA
GCCTTCGTCGAGCACTACTACACGACGTTTGATGCCAATCGTACGGGGCT
CGCCAATCTCTATCAGGAAGGTTCCATGTTGACTTTTGAAGGTCAAAAAA
TCCAAGGCTCGCAAAACATCGTCGCTAAGCTCACTAGCCTTCCCTTCCAG
CAGTGCCAGCACTCCATCACCACCGTCGATTGCCAGCCCTCCGGTCCCGC
TGGCGGCATGCTCGTTTTTGTCTCCGGTAATCTCCAACTCGCTGGTGAAC
AGCACGCTCTCAAGTTCAGCCAGATGTTCCATTTGATGCCAACACCTCAG
GGAAGCTTTTATGTGTTGAATGACATATTCAGGTTGAACTATGCATGAAG
AGAAGATTGATTGAAAAGGGGTGCAACTCCTGAAGGAGTGAAACATGTTT
CCTTATCTTTATTGAATTTTAAACATTTAAATGAACACTGGGTTTTTCTG
TGGTCGGTTATGTTTAAGGTTCCCTTGTGCCAAAAAAAAAAAAAAAAGGA
AAAAAAATTCAAAAAAAAAAAAGCACAAGAGATCGGAAACGGGATCGATT
TGAGTTATTGAAACAAAATTGATGGATAGCAAAGGGAAAGCAACCAACG
back to top