DC900064

Overview
NameDC900064
Unique NameDC900064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length970
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900064_ssr40 microsatellite DC900064_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1814 contig Csv1_Contig1814:32..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_BURP6 (Adenylate kinase OS=Burkholderia pseudomallei (strain 668) GN=adk PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.161e-12
Identity = 43/119 (36.13%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 545
            LG PG+GKGTQ   I E FG   +S GD+LRA +K+G+  G   +  + EGK+VP  + I L+++ ++E+   + +L DGFPR      A +    +  ++VL  D    E+  R+  R
Sbjct:    6 LGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGR 123          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_BURP1 (Adenylate kinase OS=Burkholderia pseudomallei (strain 1710b) GN=adk PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.161e-12
Identity = 43/119 (36.13%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 545
            LG PG+GKGTQ   I E FG   +S GD+LRA +K+G+  G   +  + EGK+VP  + I L+++ ++E+   + +L DGFPR      A +    +  ++VL  D    E+  R+  R
Sbjct:    6 LGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGR 123          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_BURP0 (Adenylate kinase OS=Burkholderia pseudomallei (strain 1106a) GN=adk PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.161e-12
Identity = 43/119 (36.13%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 545
            LG PG+GKGTQ   I E FG   +S GD+LRA +K+G+  G   +  + EGK+VP  + I L+++ ++E+   + +L DGFPR      A +    +  ++VL  D    E+  R+  R
Sbjct:    6 LGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGR 123          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_BURMS (Adenylate kinase OS=Burkholderia mallei (strain SAVP1) GN=adk PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.161e-12
Identity = 43/119 (36.13%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 545
            LG PG+GKGTQ   I E FG   +S GD+LRA +K+G+  G   +  + EGK+VP  + I L+++ ++E+   + +L DGFPR      A +    +  ++VL  D    E+  R+  R
Sbjct:    6 LGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGR 123          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_BURMA (Adenylate kinase OS=Burkholderia mallei GN=adk PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.161e-12
Identity = 43/119 (36.13%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 545
            LG PG+GKGTQ   I E FG   +S GD+LRA +K+G+  G   +  + EGK+VP  + I L+++ ++E+   + +L DGFPR      A +    +  ++VL  D    E+  R+  R
Sbjct:    6 LGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGR 123          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_BURM9 (Adenylate kinase OS=Burkholderia mallei (strain NCTC 10229) GN=adk PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.161e-12
Identity = 43/119 (36.13%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 545
            LG PG+GKGTQ   I E FG   +S GD+LRA +K+G+  G   +  + EGK+VP  + I L+++ ++E+   + +L DGFPR      A +    +  ++VL  D    E+  R+  R
Sbjct:    6 LGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGR 123          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_BURM7 (Adenylate kinase OS=Burkholderia mallei (strain NCTC 10247) GN=adk PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.161e-12
Identity = 43/119 (36.13%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 545
            LG PG+GKGTQ   I E FG   +S GD+LRA +K+G+  G   +  + EGK+VP  + I L+++ ++E+   + +L DGFPR      A +    +  ++VL  D    E+  R+  R
Sbjct:    6 LGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGR 123          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_BORT9 (Adenylate kinase OS=Borrelia turicatae (strain 91E135) GN=adk PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.161e-12
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN-DKFLIDGFPRNEENRAAFE 464
            LG PGSGKGT    +     Y H+S GDL RA I + +  G  I+ +++ G++VP  +TIK+++  +    N D F++DGFPRN     A +
Sbjct:    6 LGPPGSGKGTIAKILSGKLNYYHISTGDLFRANISNATPLGKEIKQIVENGQLVPDSITIKIVEDKINTLANKDNFILDGFPRNINQAKALD 97          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD_BORRA (Adenylate kinase OS=Borrelia recurrentis (strain A1) GN=adk PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.161e-12
Identity = 41/119 (34.45%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 545
            LG PGSGKGT    +     Y H+S GDL R  I++ +  G  I+ +++ G++VP  +TIK+++  +    N D F++DGFPRN     A E    +E   ++ F  +E+ + +R+  R
Sbjct:    6 LGPPGSGKGTIAKILSNELNYYHISTGDLFRTNIENDTPLGKEIKQIVENGQLVPDSITIKVVEDKINTIDNRDNFILDGFPRNINQ--AIELDRLLENIKIINFLINEKLLVKRLSGR 122          
BLAST of DC900064 vs. ExPASy Swiss-Prot
Match: KAD2_ARATH (Adenylate kinase 2 OS=Arabidopsis thaliana GN=ADK2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.365e-12
Identity = 38/122 (31.15%), Postives = 63/122 (51.64%), Query Frame = 3
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNR 545
            +G PGSGKGTQ   I + F   HLS GD+LRA + + +  G   +  + +G++V  ++ + ++ +AM      K F++DGFPR        + +      + + VL F   +  +E RI  R
Sbjct:   40 IGPPGSGKGTQSPVIKDEFCLCHLSTGDMLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIMDEAMNRPKCQKGFILDGFPRTVTQAEKLDEMLNRRGAQIDKVLNFAIDDSVLEERITGR 161          

HSP 2 Score: 28.1054 bits (61), Expect = 1.365e-12
Identity = 16/44 (36.36%), Postives = 20/44 (45.45%), Query Frame = 1
Query:  580 LGKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 711
            L  R   F + + PV+ YY  K  +  I A K   EV   VK V
Sbjct:  202 LRSRLDAFHKQTQPVIDYYAKKENLVNIPAEKAPEEVTKVVKKV 245          
The following BLAST results are available for this feature:
BLAST of DC900064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_BURP61.161e-1236.13Adenylate kinase OS=Burkholderia pseudomallei (str... [more]
KAD_BURP11.161e-1236.13Adenylate kinase OS=Burkholderia pseudomallei (str... [more]
KAD_BURP01.161e-1236.13Adenylate kinase OS=Burkholderia pseudomallei (str... [more]
KAD_BURMS1.161e-1236.13Adenylate kinase OS=Burkholderia mallei (strain SA... [more]
KAD_BURMA1.161e-1236.13Adenylate kinase OS=Burkholderia mallei GN=adk PE=... [more]
KAD_BURM91.161e-1236.13Adenylate kinase OS=Burkholderia mallei (strain NC... [more]
KAD_BURM71.161e-1236.13Adenylate kinase OS=Burkholderia mallei (strain NC... [more]
KAD_BORT91.161e-1239.13Adenylate kinase OS=Borrelia turicatae (strain 91E... [more]
KAD_BORRA1.161e-1234.45Adenylate kinase OS=Borrelia recurrentis (strain A... [more]
KAD2_ARATH1.365e-1231.15Adenylate kinase 2 OS=Arabidopsis thaliana GN=ADK2... [more]

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Properties
Property NameValue
Genbank descriptionDC900064 VSS Citrus sinensis cDNA clone VS27Q69 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900064 ID=DC900064; Name=DC900064; organism=Citrus sinensis; type=EST; length=970bp
TTGGCATCCCTCTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTCTCTCT
CCAAACAAAACAACGCTCGCAATTCGCTAAGATCGGTTATTCAGACTGAG
TTAGTTGGCGCTGATGGGAACTGTGGTTGAAACTCCTGTCAAGGAAGCAG
ATGCTACCGTAACTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGA
CCAGGCAGTGGAAAAGGAACCCAGTGCGCAAACATTGTTGAACACTTTGG
ATACACCCATCTCAGTGCTGGTGATCTTCTCAGAGCCGAAATCAAATCTG
GCTCTGAAAATGGAACCATGATTCAGAACATGATTAAAGAGGGAAAAATC
GTTCCTTCAGAGGTCACAATTAAGCTTCTCCAAAAAGCAATGGAGGAAAG
TGGAAATGATAAATTTCTCATCGATGGTTTTCCCAGAAACGAGGAAAATC
GTGCTGCATTTGAAGCTGTTACCAAAATTGAGCCAGAATTCGTTCTGTTT
TTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCATTTTGAATAGGAATCA
GGGAAGAGAAGATGATAACGTTGAGACAATTAGGGAAGCGGTTTAAGGTT
TTCTTAGAATCTAGTCTCCCTGTGGTTCAATATTATGAAGCTAAGGGTAA
AGTTCGGAAGATTGATGCTGCAAAGCCTGTTGCAGAGGTTTTTGATGCTG
TTAAAGCTGTTTTTACCCCAAAAGATGAGAAGGCTGCTGCTTAGGTCTTC
TCTGTCCAGAGTATCAGATTTAATATTAAGGTGGTGGTATTGTTGTTGGC
TGCTGCCTATTANTGTACTTTATTATTATGAGGTTATTATGCCACATGTT
TTACTAGAATGTCATAGAAGTTCATAGTGTATCATGATATTTATTCTTGT
TTGCCTATGTATTCTTGTTATTGAGACTGTAATAGCAAGATCAAGAGTAA
TAATAACAGCATTGATGCTT
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