CN185852

Overview
NameCN185852
Unique NameCN185852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2660 contig Csv1_Contig2660:153..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_SCHPO (40S ribosomal protein S21 OS=Schizosaccharomyces pombe GN=rps21 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.121e-17
Identity = 42/72 (58.33%), Postives = 58/72 (80.56%), Query Frame = -2
Query:  264 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADG-IYTGQFSTFALCGFVRAQGDGDSAIDRL 476
            M+NE GQ +DLY+PRKCSATNR+I +KDHA+VQIN+  VDA+G    G+ +T+A+ GFVR++G+ D  I+RL
Sbjct:    1 MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVDAEGRQIPGEKTTYAISGFVRSKGESDDCINRL 72          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_ICTPU (40S ribosomal protein S21 OS=Ictalurus punctatus GN=rps21 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.618e-17
Identity = 39/72 (54.17%), Postives = 55/72 (76.39%), Query Frame = -2
Query:  264 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVD-ADGIYTGQFSTFALCGFVRAQGDGDSAIDRL 476
            MQN+ G+ +DLY+PRKCSA+NR+I +KDHA++QINI  VD   G + GQF T+A+CG +R  G+ D ++ RL
Sbjct:    1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDKVTGRFNGQFKTYAICGAIRRMGEADDSLLRL 72          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_DANRE (40S ribosomal protein S21 OS=Danio rerio GN=rps21 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.618e-17
Identity = 39/72 (54.17%), Postives = 55/72 (76.39%), Query Frame = -2
Query:  264 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVD-ADGIYTGQFSTFALCGFVRAQGDGDSAIDRL 476
            MQN+ G+ +DLY+PRKCSA+NR+I +KDHA++QINI  VD   G + GQF T+A+CG +R  G+ D ++ RL
Sbjct:    1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDRVTGRFNGQFKTYAICGAIRRMGEADDSLLRL 72          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_PIG (40S ribosomal protein S21 OS=Sus scrofa GN=RPS21 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.171e-17
Identity = 38/72 (52.78%), Postives = 55/72 (76.39%), Query Frame = -2
Query:  264 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVD-ADGIYTGQFSTFALCGFVRAQGDGDSAIDRL 476
            MQN+ G+ +DLY+PRKCSA+NR+I +KDHA++Q+N+  VD   G + GQF T+A+CG +R  G+ D +I RL
Sbjct:    1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRL 72          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_HUMAN (40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.171e-17
Identity = 38/72 (52.78%), Postives = 55/72 (76.39%), Query Frame = -2
Query:  264 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVD-ADGIYTGQFSTFALCGFVRAQGDGDSAIDRL 476
            MQN+ G+ +DLY+PRKCSA+NR+I +KDHA++Q+N+  VD   G + GQF T+A+CG +R  G+ D +I RL
Sbjct:    1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRL 72          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_BOVIN (40S ribosomal protein S21 OS=Bos taurus GN=RPS21 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.171e-17
Identity = 38/72 (52.78%), Postives = 55/72 (76.39%), Query Frame = -2
Query:  264 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVD-ADGIYTGQFSTFALCGFVRAQGDGDSAIDRL 476
            MQN+ G+ +DLY+PRKCSA+NR+I +KDHA++Q+N+  VD   G + GQF T+A+CG +R  G+ D +I RL
Sbjct:    1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRL 72          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_RAT (40S ribosomal protein S21 OS=Rattus norvegicus GN=Rps21 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 37/72 (51.39%), Postives = 55/72 (76.39%), Query Frame = -2
Query:  264 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVD-ADGIYTGQFSTFALCGFVRAQGDGDSAIDRL 476
            MQN+ G+ +DLY+PRKCSA+NR+I +KDHA++Q+N+  VD + G + GQF T+ +CG +R  G+ D +I RL
Sbjct:    1 MQNDAGEFVDLYVPRKCSASNRIIAAKDHASIQMNVAEVDRSTGRFNGQFKTYGICGAIRRMGESDDSILRL 72          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_MOUSE (40S ribosomal protein S21 OS=Mus musculus GN=Rps21 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.053e-16
Identity = 37/72 (51.39%), Postives = 54/72 (75.00%), Query Frame = -2
Query:  264 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVD-ADGIYTGQFSTFALCGFVRAQGDGDSAIDRL 476
            MQN+ G+ +DLY+PRKCSA+NR+I +KDHA++Q+N+  VD   G + GQF T+ +CG +R  G+ D +I RL
Sbjct:    1 MQNDAGEFVDLYVPRKCSASNRIIAAKDHASIQMNVAEVDRTTGRFNGQFKTYGICGAIRRMGESDDSILRL 72          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_CANAL (40S ribosomal protein S21 OS=Candida albicans GN=RPS21 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.053e-16
Identity = 40/75 (53.33%), Postives = 59/75 (78.67%), Query Frame = -2
Query:  255 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDADG-IYTGQFSTFALCGFVRAQGDGDSAIDRLWQK 476
            M+N++GQ ++LY+PRKCSATNR+I +KDHA+VQI+I  VD DG    G+  T+AL G+VR +G+ D +++RL Q+
Sbjct:    1 MENDKGQLVELYVPRKCSATNRIIKAKDHASVQISIAKVDEDGRAIAGENITYALSGYVRGRGEADDSLNRLAQQ 75          
BLAST of CN185852 vs. ExPASy Swiss-Prot
Match: RS21_PECGU (40S ribosomal protein S21 OS=Pectinaria gouldii GN=rps-21 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.375e-16
Identity = 39/78 (50.00%), Postives = 58/78 (74.36%), Query Frame = -2
Query:  246 MQNEEGQNMDLYIPRKCSATNRLITSKDHAAVQINIGHVDAD-GIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKV 476
            MQN++G+ +D+YIPRKCSATN ++ +KDHA+VQIN+  +D   G  TG+  T+ALCG +R  G+ D +++RL  K K+
Sbjct:    1 MQNDQGEIVDVYIPRKCSATNNILAAKDHASVQINMAEIDPQTGRMTGKQITYALCGELRRMGEADDSVNRLAMKDKM 78          
The following BLAST results are available for this feature:
BLAST of CN185852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RS21_SCHPO2.121e-1758.3340S ribosomal protein S21 OS=Schizosaccharomyces p... [more]
RS21_ICTPU3.618e-1754.1740S ribosomal protein S21 OS=Ictalurus punctatus G... [more]
RS21_DANRE3.618e-1754.1740S ribosomal protein S21 OS=Danio rerio GN=rps21 ... [more]
RS21_PIG6.171e-1752.7840S ribosomal protein S21 OS=Sus scrofa GN=RPS21 P... [more]
RS21_HUMAN6.171e-1752.7840S ribosomal protein S21 OS=Homo sapiens GN=RPS21... [more]
RS21_BOVIN6.171e-1752.7840S ribosomal protein S21 OS=Bos taurus GN=RPS21 P... [more]
RS21_RAT8.060e-1751.3940S ribosomal protein S21 OS=Rattus norvegicus GN=... [more]
RS21_MOUSE1.053e-1651.3940S ribosomal protein S21 OS=Mus musculus GN=Rps21... [more]
RS21_CANAL1.053e-1653.3340S ribosomal protein S21 OS=Candida albicans GN=R... [more]
RS21_PECGU1.375e-1650.0040S ribosomal protein S21 OS=Pectinaria gouldii GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185852 ID=CN185852; Name=CN185852; organism=Citrus sinensis; type=EST; length=546bp
GGCGGGGGAGCGCGTCGCCGTTTTTTTTAGCTGTAAGCAAATCATGACCA
TATATTAAGTTCGACAGATAAACAAACTAAGTGCTAATCATGGTCCAAAA
GCAGAAGTAAATTTCAACATGGTCCACATAAGTAAAACTAGAACAAACGA
ATCGTTGCAATCACATTCCAACCCTTACAGAAGAAGACAACTGCTAGAGA
AGACACATAACTTGCTTTAATGGAAAATTATTGTTGTCGGACCTCAACTT
TCTTCTTTTGCCAAAGCCTGTCAATGGCGCTGTCACCGTCACCCTGAGCA
CGGACGAAGCCGCAGAGAGCGAAAGTGGAGAATTGGCCAGTGTAAATGCC
ATCAGCATCAACGTGCCCGATGTTGATCTGGACAGCGGCGTGATCCTTGG
AGGTGATGAGCCTGTTTGTGGCGGAACACTTCCTGGGGATATAGAGATCC
ATGTTTTGACCCTCCTCGTTCTGCATCTTGGCTGAGTTTTTTTCTTTCTT
CTTTTTTTTCCTTCTTCTTCCTTTTGACGGCCGGAAATACTAGCCT
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