CN185845

Overview
NameCN185845
Unique NameCN185845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10664 contig Csv1_Contig10664:94..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_PSEAE (Superoxide dismutase [Fe] OS=Pseudomonas aeruginosa GN=sodB PE=3 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 1.624e-29
Identity = 61/133 (45.86%), Postives = 70/133 (52.63%), Query Frame = 1 
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 615
            FEL P PY  NALEPH+S +TLE+H  KHH  YV NLN  I GTE  +GKSLE++V +S   G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV K
Sbjct:    3 FELPPLPYEKNALEPHISAETLEYHHDKHHNTYVVNLNNLIPGTEF-EGKSLEEIVKSS--SGGI---FNNAAQVWNHTFYWNCLSPNGGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKK 129

HSP 2 Score: 41.5874 bits (96), Expect = 1.624e-29
Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 2 
Query:  704 AVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            A NPL    + LLT DVWEHAYY+D++N R
Sbjct:  142 AGNPLTSGDTPLLTCDVWEHAYYIDYRNLR 171
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_SHIFL (Superoxide dismutase [Fe] OS=Shigella flexneri GN=sodB PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.624e-29
Identity = 54/131 (41.22%), Postives = 67/131 (51.15%), Query Frame = 1 
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            FEL   PY  +AL PH+S +T+E+H+GKHH+ YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSSEG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV 127

HSP 2 Score: 46.9802 bits (110), Expect = 1.624e-29
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 2 
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            NA  PL  D + LLT+DVWEHAYY+D++N R
Sbjct:  141 NAGTPLTTDATPLLTVDVWEHAYYIDYRNAR 171
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_ECOLI (Superoxide dismutase [Fe] OS=Escherichia coli (strain K12) GN=sodB PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.624e-29
Identity = 54/131 (41.22%), Postives = 67/131 (51.15%), Query Frame = 1 
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            FEL   PY  +AL PH+S +T+E+H+GKHH+ YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSSEG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV 127

HSP 2 Score: 46.9802 bits (110), Expect = 1.624e-29
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 2 
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            NA  PL  D + LLT+DVWEHAYY+D++N R
Sbjct:  141 NAGTPLTTDATPLLTVDVWEHAYYIDYRNAR 171
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_ECOL6 (Superoxide dismutase [Fe] OS=Escherichia coli O6 GN=sodB PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.624e-29
Identity = 54/131 (41.22%), Postives = 67/131 (51.15%), Query Frame = 1 
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            FEL   PY  +AL PH+S +T+E+H+GKHH+ YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSSEG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV 127

HSP 2 Score: 46.9802 bits (110), Expect = 1.624e-29
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 2 
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            NA  PL  D + LLT+DVWEHAYY+D++N R
Sbjct:  141 NAGTPLTTDATPLLTVDVWEHAYYIDYRNAR 171
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_ECO57 (Superoxide dismutase [Fe] OS=Escherichia coli O157:H7 GN=sodB PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.624e-29
Identity = 54/131 (41.22%), Postives = 67/131 (51.15%), Query Frame = 1 
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            FEL   PY  +AL PH+S +T+E+H+GKHH+ YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSSEG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV 127

HSP 2 Score: 46.9802 bits (110), Expect = 1.624e-29
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 2 
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            NA  PL  D + LLT+DVWEHAYY+D++N R
Sbjct:  141 NAGTPLTTDATPLLTVDVWEHAYYIDYRNAR 171
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_COXBU (Superoxide dismutase [Fe] OS=Coxiella burnetii GN=sodB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.586e-29
Identity = 59/131 (45.04%), Postives = 73/131 (55.73%), Query Frame = 1 
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            FEL   PY LNALEPH+S++TLE+H GKHHRAYV+ LNK I GT   + + LE+++  S   G +   FNNAAQ WNH F+W                  I++ FGS               FGSGWAWLV
Sbjct:    3 FELPDLPYKLNALEPHISQETLEYHHGKHHRAYVNKLNKLIEGTPF-EKEPLEEIIRKS--DGGI---FNNAAQHWNHTFYWHCMSPDGGGDPSGELASAIDKTFGSLEKFKALFTDSANNHFGSGWAWLV 127

HSP 2 Score: 40.4318 bits (93), Expect = 3.586e-29
Identity = 17/31 (54.84%), Postives = 21/31 (67.74%), Query Frame = 2 
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            NA NP+      L+T DVWEHAYY+D +N R
Sbjct:  141 NARNPMTEGKKPLMTCDVWEHAYYIDTRNDR 171
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_PSEPU (Superoxide dismutase [Fe] OS=Pseudomonas putida GN=sodB PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 3.852e-28
Identity = 59/133 (44.36%), Postives = 70/133 (52.63%), Query Frame = 1 
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 615
            FEL P PY  +AL+PH+SK+TLEFH  KHH  YV NLN  + GTE  +GK+LE++V  S   G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV K
Sbjct:    3 FELPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGTEF-EGKTLEEIVKTS--SGGI---FNNAAQVWNHTFYWNCLAPNAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKK 129

HSP 2 Score: 38.891 bits (89), Expect = 3.852e-28
Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 2 
Query:  713 PLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            PL    + LLT DVWEHAYY+D++N R
Sbjct:  145 PLTSGDTPLLTCDVWEHAYYIDYRNLR 171
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_BORPE (Superoxide dismutase [Fe] OS=Bordetella pertussis GN=sodB PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.019e-28
Identity = 56/131 (42.75%), Postives = 67/131 (51.15%), Query Frame = 1 
Query:  223 LKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 615
            L P PY L+AL P +SK+TLEFH+GKHH+ YV NLN  I GTE  +  SLE++V  S         FNNAAQ WNH F+W                  I+  +GS               FGSGW WLV K
Sbjct:    5 LPPLPYALDALAPRISKETLEFHYGKHHQTYVTNLNNLIPGTEF-ENLSLEEIVKKSSG-----GVFNNAAQVWNHTFYWNSLSPNGGGEPSGALADAIKAKWGSVDAFKEAFNKSAAGNFGSGWTWLVKK 129

HSP 2 Score: 43.5134 bits (101), Expect = 5.019e-28
Identity = 18/31 (58.06%), Postives = 22/31 (70.97%), Query Frame = 2 
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            NA  PL     +LLT DVWEHAYY+D++N R
Sbjct:  141 NAATPLTTADKALLTCDVWEHAYYIDYRNAR 171
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_PSEPK (Superoxide dismutase [Fe] OS=Pseudomonas putida (strain KT2440) GN=sodB PE=3 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 6.529e-28
Identity = 58/133 (43.61%), Postives = 71/133 (53.38%), Query Frame = 1 
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 615
            FEL P PY  +AL+PH+SK+TLE+H  KHH  YV NLN  + GTE  +GK+LE++V +S   G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV K
Sbjct:    3 FELPPLPYAHDALQPHISKETLEYHHDKHHNTYVVNLNNLVPGTEF-EGKTLEEIVKSS--SGGI---FNNAAQVWNHTFYWNCLSPNGGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKK 129

HSP 2 Score: 38.891 bits (89), Expect = 6.529e-28
Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = 2 
Query:  713 PLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            PL    + LLT DVWEHAYY+D++N R
Sbjct:  145 PLTSGDTPLLTCDVWEHAYYIDYRNLR 171
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_RHOCA (Superoxide dismutase [Fe] OS=Rhodobacter capsulatus GN=sodB PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.179e-27
Identity = 63/173 (36.42%), Postives = 79/173 (45.66%), Query Frame = 1 
Query:  217 FELKPPPYPLNALEP-HMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA--FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPQCCQSSCLG 726
            FEL   PY  +AL    MSK+TLE+H   HH+AYVDN NK I GTE  +GKS+E++V  +Y  G +  +  FNNA+Q WNH  FW                  +   FGS              QFGSGWAWLV                  + D +L + KT       C G
Sbjct:    3 FELPALPYAHDALASLGMSKETLEYHHDLHHKAYVDNGNKLIAGTE-WEGKSVEEIVKGTYCAGAVAQSGIFNNASQHWNHAQFWEMMGPGEDKKMPGALEKALVESFGSVAKFKEDFAAAGAGQFGSGWAWLV-----------------KDSDGALKITKTENGVNPLCFG 157

HSP 2 Score: 46.595 bits (109), Expect = 3.179e-27
Identity = 18/31 (58.06%), Postives = 25/31 (80.65%), Query Frame = 2 
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            N VNPL +  ++LL  DVWEH+YY+DF+N+R
Sbjct:  149 NGVNPLCFGQTALLGCDVWEHSYYIDFRNKR 179
The following BLAST results are available for this feature:
BLAST of CN185845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
SODF_PSEAE1.624e-2945.86Superoxide dismutase [Fe] OS=Pseudomonas aeruginos... [more]
SODF_SHIFL1.624e-2941.22Superoxide dismutase [Fe] OS=Shigella flexneri GN=... [more]
SODF_ECOLI1.624e-2941.22Superoxide dismutase [Fe] OS=Escherichia coli (str... [more]
SODF_ECOL61.624e-2941.22Superoxide dismutase [Fe] OS=Escherichia coli O6 G... [more]
SODF_ECO571.624e-2941.22Superoxide dismutase [Fe] OS=Escherichia coli O157... [more]
SODF_COXBU3.586e-2945.04Superoxide dismutase [Fe] OS=Coxiella burnetii GN=... [more]
SODF_PSEPU3.852e-2844.36Superoxide dismutase [Fe] OS=Pseudomonas putida GN... [more]
SODF_BORPE5.019e-2842.75Superoxide dismutase [Fe] OS=Bordetella pertussis ... [more]
SODF_PSEPK6.529e-2843.61Superoxide dismutase [Fe] OS=Pseudomonas putida (s... [more]
SODF_RHOCA3.179e-2736.42Superoxide dismutase [Fe] OS=Rhodobacter capsulatu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185845 ID=CN185845; Name=CN185845; organism=Citrus sinensis; type=EST; length=793bp
GGGGGGGGGGGGGGGCTAGCGGGCCCCCTTGCTTTATCTGCTATAACCAA
AGCTGTAATATATAAGGCATGGCATCGGCCGCTTTCAGCAGCTTCATCTA
CTCCAACAATTTGGTTGACTGGCCAAGGACTTGGTGCAAGGAGTACGCTA
TTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGG
CCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAATG
CTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAAG
CACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTGA
GCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAACA
AGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCAT
GACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTGG
TGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTTC
TTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGCC
TGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGAA
TCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGA
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