CN185845

Overview
NameCN185845
Unique NameCN185845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10664 contig Csv1_Contig10664:94..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_STRAG (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae GN=sodA PE=3 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 1.680e-12
Identity = 37/126 (29.37%), Postives = 48/126 (38.10%), Query Frame = 1 
Query:  235 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQI-VGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            PY  +ALEPH+  +T+  H  KHH  YV N N  +    E+G+        ++   +       NN     NH  FW                  I   FGS              +FGSGWAWLV
Sbjct:    9 PYAYDALEPHIDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVSQIPEDIRQAVINNGGGHLNHALFWELMSPEETQISQELSED-INATFGSFEDFKAAFTAAATGRFGSGWAWLV 133

HSP 2 Score: 35.4242 bits (80), Expect = 1.680e-12
Identity = 14/31 (45.16%), Postives = 21/31 (67.74%), Query Frame = 2 
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            N   P++     +L +DVWEHAYYL+++N R
Sbjct:  147 NQDTPIMEGKKPILGLDVWEHAYYLNYRNVR 177
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_STRA5 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype V GN=sodA PE=3 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 1.680e-12
Identity = 37/126 (29.37%), Postives = 48/126 (38.10%), Query Frame = 1 
Query:  235 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQI-VGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            PY  +ALEPH+  +T+  H  KHH  YV N N  +    E+G+        ++   +       NN     NH  FW                  I   FGS              +FGSGWAWLV
Sbjct:    9 PYAYDALEPHIDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVSQIPEDIRQAVINNGGGHLNHALFWELMSPEETQISQELSED-INATFGSFEDFKAAFTAAATGRFGSGWAWLV 133

HSP 2 Score: 35.4242 bits (80), Expect = 1.680e-12
Identity = 14/31 (45.16%), Postives = 21/31 (67.74%), Query Frame = 2 
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            N   P++     +L +DVWEHAYYL+++N R
Sbjct:  147 NQDTPIMEGKKPILGLDVWEHAYYLNYRNVR 177
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_STRA3 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype III GN=sodA PE=3 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 1.680e-12
Identity = 37/126 (29.37%), Postives = 48/126 (38.10%), Query Frame = 1 
Query:  235 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQI-VGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            PY  +ALEPH+  +T+  H  KHH  YV N N  +    E+G+        ++   +       NN     NH  FW                  I   FGS              +FGSGWAWLV
Sbjct:    9 PYAYDALEPHIDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVSQIPEDIRQAVINNGGGHLNHALFWELMSPEETQISQELSED-INATFGSFEDFKAAFTAAATGRFGSGWAWLV 133

HSP 2 Score: 35.4242 bits (80), Expect = 1.680e-12
Identity = 14/31 (45.16%), Postives = 21/31 (67.74%), Query Frame = 2 
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            N   P++     +L +DVWEHAYYL+++N R
Sbjct:  147 NQDTPIMEGKKPILGLDVWEHAYYLNYRNVR 177
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_DICDI (Superoxide dismutase [Mn], mitochondrial OS=Dictyostelium discoideum GN=sod2 PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 1.352e-11
Identity = 40/141 (28.37%), Postives = 52/141 (36.88%), Query Frame = 1 
Query:  199 GQISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 612
            G  S  + L   PY   AL P +S + +  H  KHH+ YV+NLN  I   +L    S +DV      +  +   FN      NH  FW                 L   I + +GS                GSGW WL Y
Sbjct:   22 GSQSNSYTLPDLPYDYGALSPVISPEIMTLHHKKHHQTYVNNLN--IALDKLSSASSAKDVAQMIALQSAI--KFNGGGHV-NHSIFWTNLAPKNQDGGVAPSGPLADAINKQYGSIEKLIEKMSAETTAIQGSGWGWLGY 157

HSP 2 Score: 38.5058 bits (88), Expect = 1.352e-11
Identity = 16/22 (72.73%), Postives = 18/22 (81.82%), Query Frame = 2 
Query:  728 YSSLLTIDVWEHAYYLDFQNRR 793
            Y  LL IDVWEHAYYLD++N R
Sbjct:  180 YVPLLGIDVWEHAYYLDYKNVR 201
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_STRP8 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M18 GN=sodA PE=3 SV=3)

HSP 1 Score: 54.6842 bits (130), Expect = 1.359e-11
Identity = 42/129 (32.56%), Postives = 55/129 (42.64%), Query Frame = 1 
Query:  235 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQI-VGTELGDGKSLEDVVIASYNK--GDLLPA-FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            PY  +ALEP    +T+  H  KHH  YV N N  +    E+G+  +LE+ ++A   K   D+  A  NN     NH  FW                  I+  FGS              +FGSGWAWLV
Sbjct:    9 PYAYDALEPQFDAETMSLHHDKHHATYVANTNAALEKHPEIGE--NLEE-LLADVTKIPEDIRQALINNGGGHLNHALFW-ELLSPEKQDVTPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLV 133

HSP 2 Score: 35.039 bits (79), Expect = 1.359e-11
Identity = 14/31 (45.16%), Postives = 20/31 (64.52%), Query Frame = 2 
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            N   P+      +L +DVWEHAYYL+++N R
Sbjct:  147 NQDTPISEGKKPILALDVWEHAYYLNYRNVR 177
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_STRP6 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M6 GN=sodA PE=3 SV=3)

HSP 1 Score: 54.299 bits (129), Expect = 1.764e-11
Identity = 42/129 (32.56%), Postives = 55/129 (42.64%), Query Frame = 1 
Query:  235 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQI-VGTELGDGKSLEDVVIASYNK--GDLLPA-FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            PY  +ALEP    +T+  H  KHH  YV N N  +    E+G+  +LE+ ++A   K   D+  A  NN     NH  FW                  I+  FGS              +FGSGWAWLV
Sbjct:    9 PYAYDALEPQFDAETMTLHHDKHHATYVANANAALEKHPEIGE--NLEE-LLADVTKIPEDIRQALINNGGGHLNHALFW-ELLSPEKQDITPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLV 133

HSP 2 Score: 35.039 bits (79), Expect = 1.764e-11
Identity = 14/31 (45.16%), Postives = 20/31 (64.52%), Query Frame = 2 
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            N   P+      +L +DVWEHAYYL+++N R
Sbjct:  147 NQDTPISEGKKPILALDVWEHAYYLNYRNVR 177
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_STRP3 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M3 GN=sodA PE=3 SV=3)

HSP 1 Score: 54.299 bits (129), Expect = 1.764e-11
Identity = 42/129 (32.56%), Postives = 55/129 (42.64%), Query Frame = 1 
Query:  235 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQI-VGTELGDGKSLEDVVIASYNK--GDLLPA-FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            PY  +ALEP    +T+  H  KHH  YV N N  +    E+G+  +LE+ ++A   K   D+  A  NN     NH  FW                  I+  FGS              +FGSGWAWLV
Sbjct:    9 PYAYDALEPQFDAETMTLHHDKHHATYVANTNAALEKHPEIGE--NLEE-LLADVTKIPEDIRQALINNGGGHLNHALFW-ELLSPEKQDVTSDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLV 133

HSP 2 Score: 35.039 bits (79), Expect = 1.764e-11
Identity = 14/31 (45.16%), Postives = 20/31 (64.52%), Query Frame = 2 
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            N   P+      +L +DVWEHAYYL+++N R
Sbjct:  147 NQDTPISEGKKPILALDVWEHAYYLNYRNVR 177
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_STRP1 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M1 GN=sodA PE=3 SV=2)

HSP 1 Score: 53.9138 bits (128), Expect = 2.291e-11
Identity = 38/128 (29.69%), Postives = 52/128 (40.62%), Query Frame = 1 
Query:  235 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQI-VGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            PY  +ALEP    +T+  H  KHH  YV N N  +    E+G+  +LE+++  +    +       NN     NH  FW                  I+  FGS              +FGSGWAWLV
Sbjct:    9 PYAYDALEPQFDAETMTLHHDKHHATYVANTNAALEKHPEIGE--NLEELLADVTKIPEDIRQTLINNGGGHLNHALFW-ELLSPEKQDVTPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLV 133

HSP 2 Score: 35.039 bits (79), Expect = 2.291e-11
Identity = 14/31 (45.16%), Postives = 20/31 (64.52%), Query Frame = 2 
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            N   P+      +L +DVWEHAYYL+++N R
Sbjct:  147 NQDTPISEGKKPILALDVWEHAYYLNYRNVR 177
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_PASMU (Superoxide dismutase [Mn] OS=Pasteurella multocida GN=sodA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 45/126 (35.71%), Postives = 54/126 (42.86%), Query Frame = 1 
Query:  238 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            Y  +ALEPH    T+E H  KHH+AYV+N N  +    EL  G   + +   +    D L A  NN     NH  FW                  I RDFGS             T+FGSGWAWLV
Sbjct:   10 YAYDALEPHFDAMTMEIHHSKHHQAYVNNANAALENLPELAQGCPGQLLTKLAEVPADKLTAIRNNVGGHLNHSLFW--KSLKKGTTLQGALKDAIVRDFGSVEAFQAEFEKAAATRFGSGWAWLV 133
The following BLAST results are available for this feature:
BLAST of CN185845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
SODM_STRAG1.680e-1229.37Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA51.680e-1229.37Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA31.680e-1229.37Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_DICDI1.352e-1128.37Superoxide dismutase [Mn], mitochondrial OS=Dictyo... [more]
SODM_STRP81.359e-1132.56Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STRP61.764e-1132.56Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STRP31.764e-1132.56Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STRP12.291e-1129.69Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_PASMU7.963e-1135.71Superoxide dismutase [Mn] OS=Pasteurella multocida... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185845 ID=CN185845; Name=CN185845; organism=Citrus sinensis; type=EST; length=793bp
GGGGGGGGGGGGGGGCTAGCGGGCCCCCTTGCTTTATCTGCTATAACCAA
AGCTGTAATATATAAGGCATGGCATCGGCCGCTTTCAGCAGCTTCATCTA
CTCCAACAATTTGGTTGACTGGCCAAGGACTTGGTGCAAGGAGTACGCTA
TTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGG
CCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAATG
CTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAAG
CACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTGA
GCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAACA
AGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCAT
GACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTGG
TGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTTC
TTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGCC
TGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGAA
TCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGA
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