CN185845

Overview
NameCN185845
Unique NameCN185845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_RICBR (Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii (strain RML369-C) GN=sodB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.133e-27
Identity = 54/137 (39.42%), Postives = 67/137 (48.91%), Query Frame = 1
Query:  202 QISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 612
            Q S  F L   PY   + +PH + +T E+H GKHH AYV NLN  +   E    K+LE+++  S ++   +  FNNAAQ WNH FFW                  I  DFGS              QFGSGWAWLVY
Sbjct:    9 QTSYPFVLPNLPYEKESFKPHFTAETFEYHHGKHHNAYVQNLNNLLKDKEELQKKNLEEIIDWS-SQNQNIAIFNNAAQVWNHTFFWHSIKPNGGGKPSGKILKQINEDFGSFEEFCEQFKAEATGQFGSGWAWLVY 144          

HSP 2 Score: 40.4318 bits (93), Expect = 4.133e-27
Identity = 16/31 (51.61%), Postives = 21/31 (67.74%), Query Frame = 2
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            NA  P+      LL  DVWEHAYY+D++N+R
Sbjct:  156 NAGTPIANGMQPLLACDVWEHAYYIDYRNKR 186          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_PSEHT (Superoxide dismutase [Fe] OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=sodB PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.136e-27
Identity = 55/131 (41.98%), Postives = 66/131 (50.38%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            FEL   PY ++ALEPH+SK+TLEFH GKHH  YV  LN  I GT+  + KSLE++V +S         FNNAAQ WNH F+W                  I   +GS               FGS W WLV
Sbjct:    2 FELPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLNGLIPGTKF-ENKSLEEIVCSSDG-----GVFNNAAQIWNHTFYWNSLSPNGGGAPTGAVADAINAKWGSFDAFKEALNDKAVNNFGSSWTWLV 126          

HSP 2 Score: 40.4318 bits (93), Expect = 9.136e-27
Identity = 17/32 (53.12%), Postives = 24/32 (75.00%), Query Frame = 2
Query:  701 NAVNPLVWD-YSSLLTIDVWEHAYYLDFQNRR 793
            NA  PL  D  + +LT+D+WEHAYY+D++N R
Sbjct:  140 NAATPLTDDGVTPILTVDLWEHAYYIDYRNVR 171          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_RICFE (Superoxide dismutase [Mn/Fe] OS=Rickettsia felis GN=sodB PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.545e-26
Identity = 53/137 (38.69%), Postives = 66/137 (48.18%), Query Frame = 1
Query:  202 QISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 612
            Q S  F L   PY   + +PH + +T ++H GKHH AYV NLN  +   E    K LE+++  S ++      FNNAAQ WNH FFW                  I +DFGS              QFGSGWAWLVY
Sbjct:    9 QTSYPFILPDLPYDKESFKPHFTPETFDYHHGKHHNAYVQNLNNLLKDKEELQKKDLEEIIEWS-SQNSNAAIFNNAAQIWNHSFFWHSIKPQGGGKPSGKILEQINKDFGSFEGFCEQFKQEAVGQFGSGWAWLVY 144          

HSP 2 Score: 40.4318 bits (93), Expect = 1.545e-26
Identity = 16/31 (51.61%), Postives = 21/31 (67.74%), Query Frame = 2
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            NA  P+      LL  DVWEHAYY+D++N+R
Sbjct:  156 NAGTPIANGMKPLLACDVWEHAYYIDYRNKR 186          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_RICCN (Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii GN=sodB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.774e-26
Identity = 51/137 (37.23%), Postives = 65/137 (47.45%), Query Frame = 1
Query:  202 QISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 612
            Q S  F L   PY   + +PH + +T ++H GKHH  YV NLN  +   E    K LE+++  S ++      FNNAAQ WNH FFW                  I +DFGS              QFGSGWAWL+Y
Sbjct:    9 QTSYPFILPDLPYEKESFKPHFTLETFDYHHGKHHNTYVQNLNNLLKDKEELQKKDLEEIIEWS-SQNSNAAIFNNAAQIWNHTFFWHSIKPQGGGKPSGKILEQINKDFGSFEEFCEQFKQEAVGQFGSGWAWLIY 144          

HSP 2 Score: 41.2022 bits (95), Expect = 5.774e-26
Identity = 16/31 (51.61%), Postives = 21/31 (67.74%), Query Frame = 2
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            NA  P+      LL  DVWEHAYY+D++N+R
Sbjct:  156 NAGTPIAHGMKPLLACDVWEHAYYIDYRNKR 186          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_RICTY (Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi GN=sodB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.756e-25
Identity = 50/141 (35.46%), Postives = 66/141 (46.81%), Query Frame = 1
Query:  190 KTGGQISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 612
            +   Q S  F L   PY   + +PH + +T ++H GKHH +YV NLN  +   E    K LE ++  S +K   +  FNNA+Q WNH FFW                  I +DFGS              QFGSGW W+VY
Sbjct:    5 RKANQTSYPFILPDLPYAKESFKPHFTCETFDYHHGKHHNSYVQNLNNLLKDREELQKKDLEGIIKWS-SKNSEVTVFNNASQIWNHTFFWYSIKPHGGGKPSGKVFEQISQDFGSFEQFCEQFKQEALGQFGSGWVWVVY 144          

HSP 2 Score: 40.0466 bits (92), Expect = 4.756e-25
Identity = 16/31 (51.61%), Postives = 22/31 (70.97%), Query Frame = 2
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            NA  P+V     +L  DVWEHAYY+D++N+R
Sbjct:  156 NADTPIVNLMKPILVCDVWEHAYYIDYRNKR 186          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_RICPR (Superoxide dismutase [Mn/Fe] OS=Rickettsia prowazekii GN=sodB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.190e-25
Identity = 49/137 (35.77%), Postives = 65/137 (47.45%), Query Frame = 1
Query:  202 QISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 612
            Q S  F L   PY   + +PH +++T ++H GKHH +YV NLN  I   E    K LE+++  S    + +   NNA+Q WNH FFW                  I +DFGS              QFGSGW W+VY
Sbjct:    9 QPSYPFILPDLPYDKESFKPHFTRETFDYHHGKHHNSYVQNLNNLIKDREELQKKDLEEIIEWSSQNAE-VAILNNASQIWNHTFFWYSIKPHGGGKPSGKVFEQISKDFGSFEQFCAQFKQEAVGQFGSGWTWVVY 144          

HSP 2 Score: 40.4318 bits (93), Expect = 6.190e-25
Identity = 16/31 (51.61%), Postives = 22/31 (70.97%), Query Frame = 2
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            NA  P+V     +L  DVWEHAYY+D++N+R
Sbjct:  156 NAGTPIVNFMKPILACDVWEHAYYIDYRNKR 186          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_ENTHI (Superoxide dismutase [Fe] OS=Entamoeba histolytica GN=SODB PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 8.078e-25
Identity = 52/131 (39.69%), Postives = 65/131 (49.62%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            F+L   PY  NALEPH+SK+TLEFH  KHH  YV+ LN  + GTE  + K+LE+++     +      +NNAAQAWNH F+W                 L    FG                FGSGW WLV
Sbjct:    3 FQLPQLPYAYNALEPHISKETLEFHHDKHHATYVNKLNGLVKGTE-QEHKTLEELI----KQKPTQAIYNNAAQAWNHAFYWKCMCGCGVKPSEQLIAKLTAA-FGGLEEFKKKFTEKAVGHFGSGWCWLV 127          

HSP 2 Score: 42.743 bits (99), Expect = 8.078e-25
Identity = 18/31 (58.06%), Postives = 22/31 (70.97%), Query Frame = 2
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            +AVNP+      LLT DVWEHAYY+D +N R
Sbjct:  140 DAVNPMTNGMKPLLTCDVWEHAYYIDTRNNR 170          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_RHIME (Superoxide dismutase [Mn] OS=Rhizobium meliloti GN=sodB PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 2.315e-24
Identity = 56/134 (41.79%), Postives = 64/134 (47.76%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW-XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 615
            FEL   PY  +AL P+MS++TLE+H  KHH AYV N NK      L D  SLED+V  SY  G   P FNNA Q +NH  FW                   I+ D G               QFGSGWAWL  K
Sbjct:    3 FELPNLPYDYDALAPYMSRETLEYHHDKHHLAYVTNGNKLAEEAGLSD-LSLEDIVKKSY--GTNQPLFNNAGQHYNHVHFWKWMKKGGGGTSLPGKLDAAIKSDLGGYDKFRADFSAAGAGQFGSGWAWLSVK 133          

HSP 2 Score: 45.0542 bits (105), Expect = 2.315e-24
Identity = 17/32 (53.12%), Postives = 24/32 (75.00%), Query Frame = 2
Query:  698 PNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            PN  NPLV   + +L +DVWEH+YY+D++N R
Sbjct:  143 PNGENPLVHGATPILGVDVWEHSYYIDYRNAR 174          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_BABBO (Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 8.640e-24
Identity = 51/133 (38.35%), Postives = 66/133 (49.62%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 615
            F+L   PY +  L PH+S++TL FH+GKHH  YV+ LN  I GT L +  ++E++++     G     FNNAAQ WNH F+W                  IE  FGS               FGSGW WLV K
Sbjct:    3 FKLPALPYGMRELIPHISEETLSFHYGKHHAGYVNKLNSLIKGTPL-ESCTIEELIL-----GQTGAVFNNAAQIWNHTFYWNSMGPNCGGEPTGPIRKKIEEKFGSFSAFKTDFSNLLAGHFGSGWGWLVLK 129          

HSP 2 Score: 35.039 bits (79), Expect = 8.640e-24
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  737 LLTIDVWEHAYYLDFQNRR 793
            LL  DVWEHAYY+D++N R
Sbjct:  154 LLCCDVWEHAYYIDYKNDR 172          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_PORGI (Superoxide dismutase [Mn/Fe] OS=Porphyromonas gingivalis GN=sodB PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.907e-23
Identity = 50/129 (38.76%), Postives = 66/129 (51.16%), Query Frame = 1
Query:  220 ELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 606
            EL   PY ++AL P +SK+T+EFH GKH + YVDNLNK I+GTE  +   L  +V  S  +G +   FNNA Q  NH+ ++                  I++ FGS             T FGSGW WL
Sbjct:    4 ELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTEF-ENADLNTIVQKS--EGGI---FNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWL 126          

HSP 2 Score: 45.0542 bits (105), Expect = 1.907e-23
Identity = 20/32 (62.50%), Postives = 23/32 (71.88%), Query Frame = 2
Query:  698 PNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            PNA NP+    + LL  DVWEHAYYL +QNRR
Sbjct:  140 PNAGNPVRKGLNPLLGFDVWEHAYYLTYQNRR 171          
The following BLAST results are available for this feature:
BLAST of CN185845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
SODF_RICBR4.133e-2739.42Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii ... [more]
SODF_PSEHT9.136e-2741.98Superoxide dismutase [Fe] OS=Pseudoalteromonas hal... [more]
SODF_RICFE1.545e-2638.69Superoxide dismutase [Mn/Fe] OS=Rickettsia felis G... [more]
SODF_RICCN5.774e-2637.23Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii... [more]
SODF_RICTY4.756e-2535.46Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi G... [more]
SODF_RICPR6.190e-2535.77Superoxide dismutase [Mn/Fe] OS=Rickettsia prowaze... [more]
SODF_ENTHI8.078e-2539.69Superoxide dismutase [Fe] OS=Entamoeba histolytica... [more]
SODF_RHIME2.315e-2441.79Superoxide dismutase [Mn] OS=Rhizobium meliloti GN... [more]
SODF_BABBO8.640e-2438.35Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB... [more]
SODF_PORGI1.907e-2338.76Superoxide dismutase [Mn/Fe] OS=Porphyromonas ging... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185845 ID=CN185845; Name=CN185845; organism=Citrus sinensis; type=EST; length=793bp
GGGGGGGGGGGGGGGCTAGCGGGCCCCCTTGCTTTATCTGCTATAACCAA
AGCTGTAATATATAAGGCATGGCATCGGCCGCTTTCAGCAGCTTCATCTA
CTCCAACAATTTGGTTGACTGGCCAAGGACTTGGTGCAAGGAGTACGCTA
TTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGG
CCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAATG
CTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAAG
CACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTGA
GCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAACA
AGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCAT
GACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTGG
TGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTTC
TTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGCC
TGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGAA
TCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGA
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