CN185845 | Citrus Genome Database

Overview


Name	CN185845
Unique Name	CN185845
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	793

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM1_STAAN (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain N315) GN=sodA PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.790e-21
Identity = 46/133 (34.59%), Postives = 60/133 (45.11%), Query Frame = 1

Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            FEL   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132

HSP 2 Score: 43.8986 bits (102), Expect = 4.790e-21
Identity = 18/32 (56.25%), Postives = 23/32 (71.88%), Query Frame = 2

Query:  698 PNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            PN  NPL    + +L +DVWEHAYYL +QN+R
Sbjct:  144 PNQDNPLTEGKTPILGLDVWEHAYYLKYQNKR 175

BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM1_STAAM (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sodA PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.790e-21
Identity = 46/133 (34.59%), Postives = 60/133 (45.11%), Query Frame = 1

Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            FEL   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132

HSP 2 Score: 43.8986 bits (102), Expect = 4.790e-21
Identity = 18/32 (56.25%), Postives = 23/32 (71.88%), Query Frame = 2

Query:  698 PNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            PN  NPL    + +L +DVWEHAYYL +QN+R
Sbjct:  144 PNQDNPLTEGKTPILGLDVWEHAYYLKYQNKR 175

BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM1_STAAC (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain COL) GN=sodA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.790e-21
Identity = 46/133 (34.59%), Postives = 60/133 (45.11%), Query Frame = 1

Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            FEL   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132

HSP 2 Score: 43.8986 bits (102), Expect = 4.790e-21
Identity = 18/32 (56.25%), Postives = 23/32 (71.88%), Query Frame = 2

Query:  698 PNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            PN  NPL    + +L +DVWEHAYYL +QN+R
Sbjct:  144 PNQDNPLTEGKTPILGLDVWEHAYYLKYQNKR 175

BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM1_STAAB (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.790e-21
Identity = 46/133 (34.59%), Postives = 60/133 (45.11%), Query Frame = 1

Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            FEL   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132

HSP 2 Score: 43.8986 bits (102), Expect = 4.790e-21
Identity = 18/32 (56.25%), Postives = 23/32 (71.88%), Query Frame = 2

Query:  698 PNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            PN  NPL    + +L +DVWEHAYYL +QN+R
Sbjct:  144 PNQDNPLTEGKTPILGLDVWEHAYYLKYQNKR 175

BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM1_STAA8 (Superoxide dismutase [Mn] 1 OS=Staphylococcus aureus (strain NCTC 8325) GN=sodA PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.790e-21
Identity = 46/133 (34.59%), Postives = 60/133 (45.11%), Query Frame = 1

Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            FEL   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132

HSP 2 Score: 43.8986 bits (102), Expect = 4.790e-21
Identity = 18/32 (56.25%), Postives = 23/32 (71.88%), Query Frame = 2

Query:  698 PNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            PN  NPL    + +L +DVWEHAYYL +QN+R
Sbjct:  144 PNQDNPLTEGKTPILGLDVWEHAYYLKYQNKR 175

BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM1_STAA3 (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain USA300) GN=sodA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.790e-21
Identity = 46/133 (34.59%), Postives = 60/133 (45.11%), Query Frame = 1

Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            FEL   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132

HSP 2 Score: 43.8986 bits (102), Expect = 4.790e-21
Identity = 18/32 (56.25%), Postives = 23/32 (71.88%), Query Frame = 2

Query:  698 PNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            PN  NPL    + +L +DVWEHAYYL +QN+R
Sbjct:  144 PNQDNPLTEGKTPILGLDVWEHAYYLKYQNKR 175

BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_BACSU (Superoxide dismutase [Mn] OS=Bacillus subtilis GN=sodA PE=1 SV=5)

HSP 1 Score: 77.7962 bits (190), Expect = 8.103e-21
Identity = 46/133 (34.59%), Postives = 58/133 (43.61%), Query Frame = 1

Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            +EL   PY  +ALEPH+ K+T+  H  KHH  YV NLNK + G      KS+E++V  + S  +       NN     NH  FW                  I   FGS              +FGSGWAWLV
Sbjct:    3 YELPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADLDSVPENIRTAVRNNGGGHANHKLFWTLLSPNGGGEPTGALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAWLV 135

HSP 2 Score: 43.1282 bits (100), Expect = 8.103e-21
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 2

Query:  698 PNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            PN  +PL    + +L +DVWEHAYYL++QNRR
Sbjct:  147 PNQDSPLSEGKTPILGLDVWEHAYYLNYQNRR 178

BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_CAMCO (Superoxide dismutase [Fe] OS=Campylobacter coli GN=sodB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.051e-20
Identity = 48/139 (34.53%), Postives = 62/139 (44.60%), Query Frame = 1

Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL-------IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 612
            FEL+  PY  NA    +S +T  +H GKHH  YV NLN  I  TE    K L  ++ +S         FNNAAQ +NHDF++                 +       +E++FGS               FGSGW WLVY
Sbjct:    2 FELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKYTEFA-SKDLVSIIKSSSG-----GVFNNAAQVYNHDFYFDCIKPITGCGCGGSCQSMDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVY 134

HSP 2 Score: 41.9726 bits (97), Expect = 1.051e-20
Identity = 17/31 (54.84%), Postives = 21/31 (67.74%), Query Frame = 2

Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            NA  P+  D   LL +DVWEHAYY+D +N R
Sbjct:  148 NAATPITEDKVPLLVVDVWEHAYYVDHRNAR 178

BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_HELPY (Superoxide dismutase [Fe] OS=Helicobacter pylori GN=sodB PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.012e-20
Identity = 47/132 (35.61%), Postives = 63/132 (47.73%), Query Frame = 1

Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 612
            F L+  P+  +++   +S    +FH GKHH+ YV+NLN  I GT+  +  SL D++  S         FNNAAQ +NHDF+W                 L E+DFGS             T FGSGW W  Y
Sbjct:    2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDF-EKSSLFDILTKSSG-----GVFNNAAQIYNHDFYWDCLSPKATALSDELKGAL-EKDFGSLEKFKEDFIKSATTLFGSGWNWAAY 126

HSP 2 Score: 38.1206 bits (87), Expect = 3.012e-20
Identity = 16/31 (51.61%), Postives = 20/31 (64.52%), Query Frame = 2

Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            NA  P+      LL +DVWEHAYY+D +N R
Sbjct:  140 NAQTPVTDKKVPLLVVDVWEHAYYIDHKNAR 170

BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM2_PLEBO (Superoxide dismutase [Mn] 2 OS=Plectonema boryanum GN=sodA2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.017e-20
Identity = 46/133 (34.59%), Postives = 57/133 (42.86%), Query Frame = 1

Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            FELKP PY  +ALEP++   T++ H  KHH AYV+NLN  I         S+ED+V  +    +       NNA    NH  FW                  I   FGS              +FGSGW WLV
Sbjct:    3 FELKPLPYAYDALEPYIDATTMQLHHDKHHAAYVNNLNAAIEKYSDLQSMSVEDLVTHLDRVPEDVRTTVRNNAGGHVNHTMFWEIMGANGSGAPTGAISEAINNSFGSFDAFKQQFNDAGTKRFGSGWVWLV 135

HSP 2 Score: 43.1282 bits (100), Expect = 3.017e-20
Identity = 17/32 (53.12%), Postives = 24/32 (75.00%), Query Frame = 2

Query:  698 PNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            PN  +PL+  ++ ++  DVWEHAYYL +QNRR
Sbjct:  148 PNQDSPLIEGHTPIMGNDVWEHAYYLKYQNRR 179

The following BLAST results are available for this feature:

BLAST of CN185845 vs. ExPASy Swiss-Prot

BLAST of CN185845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119


Match Name	E-value	Identity	Description
SODM1_STAAN	4.790e-21	34.59	Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a...	[more]
SODM1_STAAM	4.790e-21	34.59	Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a...	[more]
SODM1_STAAC	4.790e-21	34.59	Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a...	[more]
SODM1_STAAB	4.790e-21	34.59	Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a...	[more]
SODM1_STAA8	4.790e-21	34.59	Superoxide dismutase [Mn] 1 OS=Staphylococcus aure...	[more]
SODM1_STAA3	4.790e-21	34.59	Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a...	[more]
SODM_BACSU	8.103e-21	34.59	Superoxide dismutase [Mn] OS=Bacillus subtilis GN=...	[more]
SODF_CAMCO	1.051e-20	34.53	Superoxide dismutase [Fe] OS=Campylobacter coli GN...	[more]
SODF_HELPY	3.012e-20	35.61	Superoxide dismutase [Fe] OS=Helicobacter pylori G...	[more]
SODM2_PLEBO	3.017e-20	34.59	Superoxide dismutase [Mn] 2 OS=Plectonema boryanum...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS05_0001P08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN185845 ID=CN185845; Name=CN185845; organism=Citrus sinensis; type=EST; length=793bp
GGGGGGGGGGGGGGGCTAGCGGGCCCCCTTGCTTTATCTGCTATAACCAA
AGCTGTAATATATAAGGCATGGCATCGGCCGCTTTCAGCAGCTTCATCTA
CTCCAACAATTTGGTTGACTGGCCAAGGACTTGGTGCAAGGAGTACGCTA
TTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGG
CCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAATG
CTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAAG
CACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTGA
GCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAACA
AGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCAT
GACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTGG
TGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTTC
TTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGCC
TGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGAA
TCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGA