CN185845

Overview
NameCN185845
Unique NameCN185845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_HELPJ (Superoxide dismutase [Fe] OS=Helicobacter pylori J99 GN=sodB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.459e-19
Identity = 46/132 (34.85%), Postives = 62/132 (46.97%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 612
            F L+  P+  +++   +S    +FH GKHH+ YV+NLN  I GT+    KS    ++   + G     FNNAAQ +NHDF+W                 L E+DFGS             T FGSGW W  Y
Sbjct:    2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDF--EKSSLFAILTKSSGG----VFNNAAQIYNHDFYWDCLSPKATALSDELKEAL-EKDFGSLEKFKEDFIKSATTLFGSGWNWAAY 126          

HSP 2 Score: 38.1206 bits (87), Expect = 1.459e-19
Identity = 16/31 (51.61%), Postives = 20/31 (64.52%), Query Frame = 2
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            NA  P+      LL +DVWEHAYY+D +N R
Sbjct:  140 NAQTPVTDKKVPLLVVDVWEHAYYIDHKNAR 170          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_SALTY (Superoxide dismutase [Mn] OS=Salmonella typhimurium GN=sodA PE=3 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.180e-19
Identity = 49/139 (35.25%), Postives = 61/139 (43.88%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 615
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D +PA       NNA    NH  FW                  IERDFGS             T+FGSGWAWLV K
Sbjct:    3 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALENLPEFASLPVEELI----TKLDQVPADKKTVLRNNAGGHANHSLFW--KGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLK 135          

HSP 2 Score: 38.5058 bits (88), Expect = 4.180e-19
Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = 2
Query:  737 LLTIDVWEHAYYLDFQNRR 793
            +L +DVWEHAYYL FQNRR
Sbjct:  164 ILGLDVWEHAYYLKFQNRR 182          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_DEIRA (Superoxide dismutase [Mn] OS=Deinococcus radiodurans GN=sodA PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 5.431e-19
Identity = 50/142 (35.21%), Postives = 62/142 (43.66%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV-----IASYNKGDLLPAFNNAAQAWNHDFFW----XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 615
            + L   PY  +ALEPH+   T+E H  KHH+ YVDN NK + GTE  D   +E ++     + +  KG L    NNA    NH  FW                      I   FGS             T+FGSGWAWLV K
Sbjct:    3 YTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFAD-LPVEQLIQQLDRVPADKKGALR---NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVK 140          

HSP 2 Score: 38.891 bits (89), Expect = 5.431e-19
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 2
Query:  701 NAVNPLVWDY------SSLLTIDVWEHAYYLDFQNRR 793
            N  NPL+ +       + +L +DVWEHAYYL++QNRR
Sbjct:  151 NQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRR 187          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_SHIFL (Superoxide dismutase [Mn] OS=Shigella flexneri GN=sodA PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.436e-19
Identity = 49/139 (35.25%), Postives = 61/139 (43.88%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 615
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D LPA       NNA    NH  FW                  IERDFGS             ++FGSGWAWLV K
Sbjct:    3 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI----TKLDQLPADKKTVLRNNAGGHANHSLFW--KGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLK 135          

HSP 2 Score: 38.5058 bits (88), Expect = 5.436e-19
Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = 2
Query:  737 LLTIDVWEHAYYLDFQNRR 793
            +L +DVWEHAYYL FQNRR
Sbjct:  164 ILGLDVWEHAYYLKFQNRR 182          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_SALTI (Superoxide dismutase [Mn] OS=Salmonella typhi GN=sodA PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.436e-19
Identity = 49/139 (35.25%), Postives = 61/139 (43.88%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 615
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D +PA       NNA    NH  FW                  IERDFGS             T+FGSGWAWLV K
Sbjct:    3 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALENLPEFADLPVEELI----TKLDQVPADKKTVLRNNAGGHANHSLFW--KGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLK 135          

HSP 2 Score: 38.5058 bits (88), Expect = 5.436e-19
Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = 2
Query:  737 LLTIDVWEHAYYLDFQNRR 793
            +L +DVWEHAYYL FQNRR
Sbjct:  164 ILGLDVWEHAYYLKFQNRR 182          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_ECO57 (Superoxide dismutase [Mn] OS=Escherichia coli O157:H7 GN=sodA PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.436e-19
Identity = 49/139 (35.25%), Postives = 61/139 (43.88%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 615
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D LPA       NNA    NH  FW                  IERDFGS             ++FGSGWAWLV K
Sbjct:    3 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI----TKLDQLPADKKTVLRNNAGGHANHSLFW--KGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLK 135          

HSP 2 Score: 38.5058 bits (88), Expect = 5.436e-19
Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = 2
Query:  737 LLTIDVWEHAYYLDFQNRR 793
            +L +DVWEHAYYL FQNRR
Sbjct:  164 ILGLDVWEHAYYLKFQNRR 182          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_PSEAE (Superoxide dismutase [Mn] OS=Pseudomonas aeruginosa GN=sodA PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.073e-19
Identity = 42/130 (32.31%), Postives = 57/130 (43.85%), Query Frame = 1
Query:  223 LKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 606
            L P PY  +ALEPH+   T+E H  KHH+ YV+NLN  + GT   + + +E ++  +A   +    P  NN     NH  FW                  I+   G              T+FGSGWAWL
Sbjct:    5 LPPLPYAYDALEPHIDALTMEIHHSKHHQTYVNNLNAALEGTPYAE-QPVESLLRQLAGLPEKLRTPVVNNGGGHANHSLFWTVMSPQGGGRPDGDLGRAIDEQLGGFEAFKDAFTKAALTRFGSGWAWL 133          

HSP 2 Score: 40.4318 bits (93), Expect = 7.073e-19
Identity = 17/31 (54.84%), Postives = 23/31 (74.19%), Query Frame = 2
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            N  +PL+   + +L +DVWEHAYYL +QNRR
Sbjct:  148 NQDSPLMNGNTPILGLDVWEHAYYLKYQNRR 178          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM2_STAAW (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MW2) GN=sodM PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.077e-19
Identity = 43/133 (32.33%), Postives = 61/133 (45.86%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            F+L   PY  +ALEP++ + T+EFH  KHH  YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV
Sbjct:    3 FKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLV 132          

HSP 2 Score: 43.5134 bits (101), Expect = 7.077e-19
Identity = 18/32 (56.25%), Postives = 22/32 (68.75%), Query Frame = 2
Query:  698 PNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            PN  NPL    + +L  DVWEHAYYL +QN+R
Sbjct:  144 PNQDNPLTEGKTPILLFDVWEHAYYLKYQNKR 175          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM2_STAAS (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MSSA476) GN=sodM PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.077e-19
Identity = 43/133 (32.33%), Postives = 61/133 (45.86%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            F+L   PY  +ALEP++ + T+EFH  KHH  YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV
Sbjct:    3 FKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLV 132          

HSP 2 Score: 43.5134 bits (101), Expect = 7.077e-19
Identity = 18/32 (56.25%), Postives = 22/32 (68.75%), Query Frame = 2
Query:  698 PNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            PN  NPL    + +L  DVWEHAYYL +QN+R
Sbjct:  144 PNQDNPLTEGKTPILLFDVWEHAYYLKYQNKR 175          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM2_STAAR (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MRSA252) GN=sodM PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.077e-19
Identity = 43/133 (32.33%), Postives = 61/133 (45.86%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            F+L   PY  +ALEP++ + T+EFH  KHH  YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV
Sbjct:    3 FKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLV 132          

HSP 2 Score: 43.5134 bits (101), Expect = 7.077e-19
Identity = 18/32 (56.25%), Postives = 22/32 (68.75%), Query Frame = 2
Query:  698 PNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            PN  NPL    + +L  DVWEHAYYL +QN+R
Sbjct:  144 PNQDNPLTEGKTPILLFDVWEHAYYLKYQNKR 175          
The following BLAST results are available for this feature:
BLAST of CN185845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
SODF_HELPJ1.459e-1934.85Superoxide dismutase [Fe] OS=Helicobacter pylori J... [more]
SODM_SALTY4.180e-1935.25Superoxide dismutase [Mn] OS=Salmonella typhimuriu... [more]
SODM_DEIRA5.431e-1935.21Superoxide dismutase [Mn] OS=Deinococcus radiodura... [more]
SODM_SHIFL5.436e-1935.25Superoxide dismutase [Mn] OS=Shigella flexneri GN=... [more]
SODM_SALTI5.436e-1935.25Superoxide dismutase [Mn] OS=Salmonella typhi GN=s... [more]
SODM_ECO575.436e-1935.25Superoxide dismutase [Mn] OS=Escherichia coli O157... [more]
SODM_PSEAE7.073e-1932.31Superoxide dismutase [Mn] OS=Pseudomonas aeruginos... [more]
SODM2_STAAW7.077e-1932.33Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAS7.077e-1932.33Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAR7.077e-1932.33Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185845 ID=CN185845; Name=CN185845; organism=Citrus sinensis; type=EST; length=793bp
GGGGGGGGGGGGGGGCTAGCGGGCCCCCTTGCTTTATCTGCTATAACCAA
AGCTGTAATATATAAGGCATGGCATCGGCCGCTTTCAGCAGCTTCATCTA
CTCCAACAATTTGGTTGACTGGCCAAGGACTTGGTGCAAGGAGTACGCTA
TTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGG
CCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAATG
CTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAAG
CACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTGA
GCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAACA
AGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCAT
GACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTGG
TGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTTC
TTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGCC
TGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGAA
TCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGA
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