CN185845

Overview
NameCN185845
Unique NameCN185845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_KLEPL (Superoxide dismutase [Fe] (Fragment) OS=Klebsiella planticola GN=sodA PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.205e-18
Identity = 49/137 (35.77%), Postives = 59/137 (43.07%), Query Frame = 1 
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            +EL   PY  +ALEPH+   T E H  KHH  YV NLN  + GTE  D K + D++       D LPA       NN     NH  FW                  I+  FGS             T+FGSGWAWL+
Sbjct:    3 YELPQLPYAYDALEPHIDAKTXEIHHSKHHNTYVTNLNAAVEGTEFAD-KDINDLIAML----DALPADKQTAVRNNGGGHANHTLFWEVIAPGGSNTPVGEVAKAIDAKFGSFDAFKEEFAKAATTRFGSGWAWLI 134

HSP 2 Score: 31.5722 bits (70), Expect = 1.205e-18
Identity = 12/25 (48.00%), Postives = 18/25 (72.00%), Query Frame = 2 
Query:  698 PNAVNPLVWDYSSLLTIDVWEHAYY 772
            PN  +P++   + +L +DVWEHAYY
Sbjct:  146 PNQDSPVMEGKTPVLGLDVWEHAYY 170
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_YEREN (Superoxide dismutase [Mn] OS=Yersinia enterocolitica GN=sodA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.554e-18
Identity = 50/139 (35.97%), Postives = 61/139 (43.88%), Query Frame = 1 
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 615
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +         S+ED++       D +PA       NNA    NH  FW                  IERDFGS             T+FGSGWAWLV K
Sbjct:    3 YSLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANTVLESFPELAKFSVEDLI----KDLDKVPAEKRTFMRNNAGGHANHSLFW--KGLKLGTTLTGDLKAAIERDFGSVDSFKEKFEAAAATRFGSGWAWLVLK 135

HSP 2 Score: 37.3502 bits (85), Expect = 1.554e-18
Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = 2 
Query:  737 LLTIDVWEHAYYLDFQNRR 793
            ++ +DVWEHAYYL FQNRR
Sbjct:  165 IVGLDVWEHAYYLKFQNRR 183
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_XANCP (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris GN=sodA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.023e-18
Identity = 41/132 (31.06%), Postives = 60/132 (45.45%), Query Frame = 1 
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 606
            + L   PY  +ALEP++   T+E H  KHH+ Y++N+N  + GTE  D   +E++V  + S  +    P  NN     NH  FW                  I++D G              ++FGSGWAWL
Sbjct:    3 YTLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYAD-LPVEELVSKLKSLPENLQGPVRNNGGGHANHSLFWTVMSPNGGGEPKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWL 133

HSP 2 Score: 40.0466 bits (92), Expect = 2.023e-18
Identity = 17/31 (54.84%), Postives = 22/31 (70.97%), Query Frame = 2 
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            N  +PL    + +L +DVWEHAYYL +QNRR
Sbjct:  148 NQDSPLFEGNTPILGLDVWEHAYYLKYQNRR 178
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_XANC8 (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=sodA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.023e-18
Identity = 41/132 (31.06%), Postives = 60/132 (45.45%), Query Frame = 1 
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 606
            + L   PY  +ALEP++   T+E H  KHH+ Y++N+N  + GTE  D   +E++V  + S  +    P  NN     NH  FW                  I++D G              ++FGSGWAWL
Sbjct:    3 YTLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYAD-LPVEELVSKLKSLPENLQGPVRNNGGGHANHSLFWTVMSPNGGGEPKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWL 133

HSP 2 Score: 40.0466 bits (92), Expect = 2.023e-18
Identity = 17/31 (54.84%), Postives = 22/31 (70.97%), Query Frame = 2 
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            N  +PL    + +L +DVWEHAYYL +QNRR
Sbjct:  148 NQDSPLFEGNTPILGLDVWEHAYYLKYQNRR 178
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_METJ (Superoxide dismutase [Mn/Fe] OS=Methylomonas J GN=sodB PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.449e-18
Identity = 43/136 (31.62%), Postives = 55/136 (40.44%), Query Frame = 1 
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLL------PAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 606
            + L P  Y   ALEPH+   T+E H  KHH+ Y++N+N  + GT   +     + V A   K D L      P  NN     NH  FW                  I+ D G              T+FGSGWAWL
Sbjct:    2 YTLPPLDYAYTALEPHIDAQTMEIHHTKHHQTYINNVNAALEGTSFAN-----EPVEALLQKLDSLPENLRGPVRNNGGGHANHSLFWKVLTPNGGGEPKGALADAIKSDIGGLDTFKEAFTKAALTRFGSGWAWL 132

HSP 2 Score: 40.0466 bits (92), Expect = 4.449e-18
Identity = 17/31 (54.84%), Postives = 22/31 (70.97%), Query Frame = 2 
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            N  +PL    + +L +DVWEHAYYL +QNRR
Sbjct:  147 NQDSPLSTGNTPILGLDVWEHAYYLKYQNRR 177
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_LISIN (Superoxide dismutase [Mn] OS=Listeria innocua GN=sodA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.785e-18
Identity = 42/133 (31.58%), Postives = 59/133 (44.36%), Query Frame = 1 
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            +EL   PY  +ALEP+  K+T+E H+ KHH  YV  LN+ + G      K +E++V  + S  +       N+     NH  FW                  IE +FG+              +FGSGWAWLV
Sbjct:    3 YELPKLPYTYDALEPNFDKETMELHYTKHHNTYVTKLNEAVSGHPELAEKPVEELVANLDSVPEDIRGAVRNHGGGHANHTLFWSILSPNGGGAPTGDLKSAIESEFGTFDDFKEKFNAAAAARFGSGWAWLV 135

HSP 2 Score: 40.0466 bits (92), Expect = 5.785e-18
Identity = 18/31 (58.06%), Postives = 22/31 (70.97%), Query Frame = 2 
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            N  +PL    + +L +DVWEHAYYL FQNRR
Sbjct:  148 NQDSPLSDGKTPVLGLDVWEHAYYLKFQNRR 178
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_PLAVI (Superoxide dismutase [Fe] OS=Plasmodium vivax GN=SODB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.725e-18
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = 1 
Query:  238 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 606
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWL 126
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_PLAMA (Superoxide dismutase [Fe] OS=Plasmodium malariae GN=SODB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.725e-18
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = 1 
Query:  238 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 606
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGGIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWL 126
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_PLAFX (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate HB3) GN=SODB PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.725e-18
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = 1 
Query:  238 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 606
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWL 126
[Close]
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_PLAFA (Superoxide dismutase [Fe] OS=Plasmodium falciparum GN=SODB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.725e-18
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = 1 
Query:  238 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 606
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWL 126
The following BLAST results are available for this feature:
BLAST of CN185845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
SODM_KLEPL1.205e-1835.77Superoxide dismutase [Fe] (Fragment) OS=Klebsiella... [more]
SODM_YEREN1.554e-1835.97Superoxide dismutase [Mn] OS=Yersinia enterocoliti... [more]
SODM_XANCP2.023e-1831.06Superoxide dismutase [Mn] OS=Xanthomonas campestri... [more]
SODM_XANC82.023e-1831.06Superoxide dismutase [Mn] OS=Xanthomonas campestri... [more]
SODF_METJ4.449e-1831.62Superoxide dismutase [Mn/Fe] OS=Methylomonas J GN=... [more]
SODM_LISIN5.785e-1831.58Superoxide dismutase [Mn] OS=Listeria innocua GN=s... [more]
SODF_PLAVI6.725e-1840.65Superoxide dismutase [Fe] OS=Plasmodium vivax GN=S... [more]
SODF_PLAMA6.725e-1840.65Superoxide dismutase [Fe] OS=Plasmodium malariae G... [more]
SODF_PLAFX6.725e-1840.65Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_PLAFA6.725e-1840.65Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185845 ID=CN185845; Name=CN185845; organism=Citrus sinensis; type=EST; length=793bp
GGGGGGGGGGGGGGGCTAGCGGGCCCCCTTGCTTTATCTGCTATAACCAA
AGCTGTAATATATAAGGCATGGCATCGGCCGCTTTCAGCAGCTTCATCTA
CTCCAACAATTTGGTTGACTGGCCAAGGACTTGGTGCAAGGAGTACGCTA
TTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGG
CCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAATG
CTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAAG
CACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTGA
GCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAACA
AGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCAT
GACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTGG
TGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTTC
TTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGCC
TGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGAA
TCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGA
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