CN185845

Overview
NameCN185845
Unique NameCN185845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODF_PLAF7 (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate 3D7) GN=SODB PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.725e-18
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = 1
Query:  238 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 606
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWL 126          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_THEAQ (Superoxide dismutase [Mn] OS=Thermus aquaticus GN=sodA PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.775e-18
Identity = 41/133 (30.83%), Postives = 52/133 (39.10%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            F+L    YP  ALEPH+   T+E H  KHH AYV NLN  +       G  +E ++  + +          NN     NH  FW                  I+  FG               +FGSGWAWLV
Sbjct:    5 FKLPELGYPYEALEPHIDARTMEIHHQKHHGAYVTNLNAALEKYPYLQGAEVETLLRHLTALPADIQAAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFAALKEKLTQAAMGRFGSGWAWLV 137          

HSP 2 Score: 43.5134 bits (101), Expect = 9.775e-18
Identity = 17/31 (54.84%), Postives = 24/31 (77.42%), Query Frame = 2
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            N  NP++  ++ ++ IDVWEHAYYL +QNRR
Sbjct:  151 NQDNPVMGGFAPIVGIDVWEHAYYLKYQNRR 181          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_LISIV (Superoxide dismutase [Mn] OS=Listeria ivanovii GN=sodA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.272e-17
Identity = 43/133 (32.33%), Postives = 57/133 (42.86%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            +EL   PY  +ALEP+  K+T+E H+ KHH  YV  LN+ + G  EL      E V        ++  A  N+     NH  FW                  IE +FG+              +FGSGWAWLV
Sbjct:    3 YELPKLPYTYDALEPNFDKETMEIHYTKHHNIYVTKLNEAVSGHAELASKPGEELVANLDSVPEEIRGAVRNHGGGHANHTLFWSSLSPNGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLV 135          

HSP 2 Score: 40.4318 bits (93), Expect = 1.272e-17
Identity = 18/31 (58.06%), Postives = 22/31 (70.97%), Query Frame = 2
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            N  +PL    + +L +DVWEHAYYL FQNRR
Sbjct:  148 NQDSPLSEGKTPVLGLDVWEHAYYLKFQNRR 178          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_CHLRE (Superoxide dismutase [Mn], mitochondrial OS=Chlamydomonas reinhardtii GN=SODA PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.625e-17
Identity = 47/141 (33.33%), Postives = 57/141 (40.43%), Query Frame = 1
Query:  223 LKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKG---DLLP------AFNNAAQAWNHDFFW-XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 615
            L P PY   +LEPH+   T+  H  KHH+ YV+NLN       L     L+D+ +   NK    D LP        NN    +NH FFW                   IE  FGS              +FGSGWAWL  K
Sbjct:    5 LPPLPYDYGSLEPHVDATTMNIHHTKHHQTYVNNLN-----AALDKFPELKDLGLVDLNKAVGTDKLPKDVATVIRNNGGGHYNHSFFWKVMTNPSNTNGPNGDVKAAIEASFGSVDEMKAKFNAAAAGRFGSGWAWLSVK 140          

HSP 2 Score: 39.6614 bits (91), Expect = 3.625e-17
Identity = 20/38 (52.63%), Postives = 23/38 (60.53%), Query Frame = 2
Query:  698 PNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRR 793
            PN  NPL+           LL +DVWEHAYYL +QNRR
Sbjct:  151 PNQDNPLMTALPDVAGGIPLLGLDVWEHAYYLKYQNRR 188          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_ENTFA (Superoxide dismutase [Fe] OS=Enterococcus faecalis GN=sodA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.986e-17
Identity = 48/135 (35.56%), Postives = 62/135 (45.93%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQI-VGTELGDGKSLEDVVIASYN--KGDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            + L   PY  +ALEP++  +T+  H  KHH  YV NLN  I    ELG+ KS+E+ +I+  N    D+  A  NN     NH FFW                  I+  FGS              +FGSGWAWLV
Sbjct:    3 YTLPELPYAYDALEPYIDVETMHLHHDKHHNTYVTNLNAAIEKHPELGE-KSVEN-LISDMNAIPEDIRTAVRNNGGGHANHTFFWEIMAPNAGGQPTGAIKEAIDETFGSFDEMKAAFKTAATGRFGSGWAWLV 135          

HSP 2 Score: 38.5058 bits (88), Expect = 7.986e-17
Identity = 16/32 (50.00%), Postives = 23/32 (71.88%), Query Frame = 2
Query:  698 PNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            PN  +PL+   + +L +DVWEHAYYL ++N R
Sbjct:  147 PNQDSPLMDGQTPVLGLDVWEHAYYLKYKNVR 178          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM2_BACCR (Superoxide dismutase [Mn] 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA2 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.348e-16
Identity = 38/135 (28.15%), Postives = 58/135 (42.96%), Query Frame = 1
Query:  211 AKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            + F+L    Y  + LEPH+  +TL  H GKHH  YV+NLN  +        KSLE+++  + +  K  +    NN    + H  FW                 +I+  F +             ++FGSG+ WLV
Sbjct:    2 SSFQLPKLSYDYDELEPHIDSNTLSIHHGKHHATYVNNLNATLENYTELHNKSLEELLCNLDTLPKEIVTAVRNNGGGHYCHSLFWEVMSPRGGGEPNGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWLV 136          

HSP 2 Score: 43.1282 bits (100), Expect = 1.348e-16
Identity = 20/32 (62.50%), Postives = 21/32 (65.62%), Query Frame = 2
Query:  698 PNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            PN   PL      LL IDVWEHAYYL +QNRR
Sbjct:  148 PNQDTPLQEGKIPLLVIDVWEHAYYLKYQNRR 179          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_PSEPU (Superoxide dismutase [Mn] OS=Pseudomonas putida GN=sodA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.755e-16
Identity = 41/126 (32.54%), Postives = 52/126 (41.27%), Query Frame = 1
Query:  235 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLL--PAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 606
            PY  +ALEPH+   T+E H  KHH+ YV+ LN  I GTE  +   +E +V A     + L     N+     NH  FW                  I    G              T+FGSGWAWL
Sbjct:    9 PYAYDALEPHIDAQTMEIHHTKHHQTYVNGLNAAIEGTEWAEW-PVEKLVGAVKQLPESLRGAVTNHGGGHANHSLFWTVMSPQGGGEPHGQLAQAIASQLGGFDAFKEAFTKAALTRFGSGWAWL 133          

HSP 2 Score: 40.817 bits (94), Expect = 1.755e-16
Identity = 16/31 (51.61%), Postives = 23/31 (74.19%), Query Frame = 2
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            N  +PL++  + +  +DVWEHAYYL +QNRR
Sbjct:  148 NQDSPLMFGNTPIFGLDVWEHAYYLKYQNRR 178          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM2_BACAN (Superoxide dismutase [Mn] 2 OS=Bacillus anthracis GN=sodA2 PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.850e-16
Identity = 37/135 (27.41%), Postives = 58/135 (42.96%), Query Frame = 1
Query:  211 AKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            + F+L    Y  + LEP++  +TL  H GKHH  YV+NLN  +        KSLE+++  + +  K  +    NN    + H  FW                 +I+  F +             ++FGSG+ WLV
Sbjct:    2 SSFQLPKLSYDYDELEPYIDSNTLSIHHGKHHATYVNNLNAALENYSELHNKSLEELLCNLETLPKEIVTAVRNNGGGHYCHSLFWEVMSPRGGGEPNGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWLV 136          

HSP 2 Score: 43.1282 bits (100), Expect = 3.850e-16
Identity = 20/32 (62.50%), Postives = 21/32 (65.62%), Query Frame = 2
Query:  698 PNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            PN   PL      LL IDVWEHAYYL +QNRR
Sbjct:  148 PNQDTPLQEGKIPLLVIDVWEHAYYLKYQNRR 179          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_LACLM (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=sodA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.099e-15
Identity = 44/136 (32.35%), Postives = 59/136 (43.38%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            F L   PY  NALEP   + T+  H GKHH+ YV+NLN  I      D  SLE+++  +++  +       NN     NH  FW                 +   I ++FGS              +FGSGWAWLV
Sbjct:    3 FTLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEKHNELDDLSLEELLTDLSAIPEDIRTAVRNNGGGHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLV 138          

HSP 2 Score: 35.8094 bits (81), Expect = 1.099e-15
Identity = 15/31 (48.39%), Postives = 20/31 (64.52%), Query Frame = 2
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            N  NP+    + +L +DVWEHAYYL + N R
Sbjct:  152 NQDNPISEGLTPVLGLDVWEHAYYLKYHNVR 182          
BLAST of CN185845 vs. ExPASy Swiss-Prot
Match: SODM_LACLA (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. lactis GN=sodA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.099e-15
Identity = 44/136 (32.35%), Postives = 59/136 (43.38%), Query Frame = 1
Query:  217 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 609
            F L   PY  NALEP   + T+  H GKHH+ YV+NLN  I      D  SLE+++  +++  +       NN     NH  FW                 +   I ++FGS              +FGSGWAWLV
Sbjct:    3 FTLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEKHNELDDLSLEELLTDLSAIPEDIRTAVRNNGGGHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLV 138          

HSP 2 Score: 35.8094 bits (81), Expect = 1.099e-15
Identity = 15/31 (48.39%), Postives = 20/31 (64.52%), Query Frame = 2
Query:  701 NAVNPLVWDYSSLLTIDVWEHAYYLDFQNRR 793
            N  NP+    + +L +DVWEHAYYL + N R
Sbjct:  152 NQDNPISEGLTPVLGLDVWEHAYYLKYHNVR 182          
The following BLAST results are available for this feature:
BLAST of CN185845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
SODF_PLAF76.725e-1840.65Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODM_THEAQ9.775e-1830.83Superoxide dismutase [Mn] OS=Thermus aquaticus GN=... [more]
SODM_LISIV1.272e-1732.33Superoxide dismutase [Mn] OS=Listeria ivanovii GN=... [more]
SODM_CHLRE3.625e-1733.33Superoxide dismutase [Mn], mitochondrial OS=Chlamy... [more]
SODM_ENTFA7.986e-1735.56Superoxide dismutase [Fe] OS=Enterococcus faecalis... [more]
SODM2_BACCR1.348e-1628.15Superoxide dismutase [Mn] 2 OS=Bacillus cereus (st... [more]
SODM_PSEPU1.755e-1632.54Superoxide dismutase [Mn] OS=Pseudomonas putida GN... [more]
SODM2_BACAN3.850e-1627.41Superoxide dismutase [Mn] 2 OS=Bacillus anthracis ... [more]
SODM_LACLM1.099e-1532.35Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_LACLA1.099e-1532.35Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185845 ID=CN185845; Name=CN185845; organism=Citrus sinensis; type=EST; length=793bp
GGGGGGGGGGGGGGGCTAGCGGGCCCCCTTGCTTTATCTGCTATAACCAA
AGCTGTAATATATAAGGCATGGCATCGGCCGCTTTCAGCAGCTTCATCTA
CTCCAACAATTTGGTTGACTGGCCAAGGACTTGGTGCAAGGAGTACGCTA
TTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGG
CCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAATG
CTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAAG
CACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTGA
GCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAACA
AGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCAT
GACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTGG
TGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTTC
TTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGCC
TGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGAA
TCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGA
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