CN185844

Overview
NameCN185844
Unique NameCN185844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.078e-46
Identity = 91/195 (46.67%), Postives = 134/195 (68.72%), Query Frame = 3
Query:  144 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSG 728
            Y +LFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  D K IKLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +++FN++  WL +   YA+ N+  +L+GNK D+ + + VSYE  + FADE G+ F+ETSAK+A+NVE+AF+  A+ I  ++       N     +++ G P +++ G
Sbjct:    2 YSFLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQKGDFDINNESFGIKL-GAPTSKQDG 195          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB19_BOVIN (Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.408e-46
Identity = 88/196 (44.90%), Postives = 132/196 (67.35%), Query Frame = 3
Query:  129 TMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPV 713
            T++  +DYLFK++LIGDS VGK+C++  F    Y+E+  +TIGVDF +R +E DGK +K+Q+WDTAGQERFRTIT SYYR AH  I+ YD+T + +F +V  W++EI++Y + N+  +L+GNKCDL   + V +E A   A++ G +  +ETSAK + N+++ F+ MA  +  R  S P      P ++ +   PV
Sbjct:    9 TVDENFDYLFKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRALEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCDLWEKRHVLFEDACILAEKYGLLAVLETSAKESKNIDEVFVLMARELMAR-HSLPLYGEGAPGSLPLESTPV 203          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.408e-46
Identity = 96/211 (45.50%), Postives = 139/211 (65.88%), Query Frame = 3
Query:  135 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIR-GQPV--------NQKSGCCST 740
            + EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++ +G+T+K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +A  N+  +L+GNK DL   + V+ E A+++A++ G+ F+ETSA  A NVE+AF  + + +   ++ +  S++       I+ GQ +        N K  CCS+
Sbjct:    6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTTANANIKEGQTIDVAATSESNAKKPCCSS 216          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.839e-46
Identity = 104/213 (48.83%), Postives = 137/213 (64.32%), Query Frame = 3
Query:  123 GTTMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK---NRMASQPASNNARPPTVQIR---GQPVN--QKSGCCS 737
            G   ++EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R++  D K IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV+ WL E+  +   N+  +LVGNK DL     V  E AK+FA++  + FMETSA  ATNVE AF  +   I    ++ A + AS +A  P+   +   G+ V+  +K GCCS
Sbjct:    3 GYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVPSKGDKIDIGKDVSAVKKGGCCS 215          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.402e-46
Identity = 89/169 (52.66%), Postives = 123/169 (72.78%), Query Frame = 3
Query:  144 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 650
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +L+GNKCDLT  + V+ E  + FA E G+ F+ETSA++A NVE+AF+  A  I  ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKI 171          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.402e-46
Identity = 96/215 (44.65%), Postives = 141/215 (65.58%), Query Frame = 3
Query:  123 GTTMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-----KNRMASQPASNNARP-----PTVQIRGQPVNQKSGCCS 737
            G  +++EY YLFK++LIGDSGVGKS +L RF  + +     STIGV+F  ++++ +GKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+T ++SF+NV +WL E+  +A  ++  ++VGNK DL   + VS +  KA A++ G+ F+ETSA  A NVE+AF  +   +     +  +A++ A+  + P      T+ I     N K  CCS
Sbjct:    2 GGRVDHEYSYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKALAAKEAAAASAPLPSQGKTISIDSAAGNTKRACCS 216          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.137e-46
Identity = 98/212 (46.23%), Postives = 137/212 (64.62%), Query Frame = 3
Query:  135 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPV-----------NQKSGCCS 737
            +++YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+T   +F NV++WL E+  +A  N+  +LVGNK DL   + V  E A+AF +  G+ F+ETSA  +TNVE+AF  +   I + ++ +   +    P +   G+ V            +K GCCS
Sbjct:    6 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRPKIG-EGRDVIVIDNAHDDGGKKKGGCCS 216          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB15_RAT (Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.350e-46
Identity = 83/162 (51.23%), Postives = 119/162 (73.46%), Query Frame = 3
Query:  132 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 617
            M  +YD LF+LLLIGDSGVGK+CLL RF D+ +  S+ISTIGVDFK++T+E DG  +++QIWDTAGQER++TIT  YYR A GI +VYD++ + S+ ++ +W++++D YA E V K+L+GNK D    + V  E  +  A E G+ F ETSA +  N++++F
Sbjct:    1 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESF 162          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB15_HUMAN (Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.350e-46
Identity = 83/162 (51.23%), Postives = 119/162 (73.46%), Query Frame = 3
Query:  132 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 617
            M  +YD LF+LLLIGDSGVGK+CLL RF D+ +  S+ISTIGVDFK++T+E DG  +++QIWDTAGQER++TIT  YYR A GI +VYD++ + S+ ++ +W++++D YA E V K+L+GNK D    + V  E  +  A E G+ F ETSA +  N++++F
Sbjct:    1 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESF 162          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.988e-46
Identity = 101/215 (46.98%), Postives = 134/215 (62.33%), Query Frame = 3
Query:  123 GTTMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVN---------QKSGCCST 740
            G    ++YDYLFKL+LIGDSGVGKS LL RF+ + +     STIGV+F  R++  D K +K QIWDTAGQER+R ITS+YYRGA G +VVYD+T   +F NV++WL E+  +  +N+  +LVGNK DL   + VS E AKAFA+     FMETSA  + NVE AF  +   I  ++  + A      P    +GQ +N         +K GCCS+
Sbjct:    4 GYRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEI-YKVVCRKALEVGDDPAALPKGQTINVGKDDVSAVKKVGCCSS 217          
The following BLAST results are available for this feature:
BLAST of CN185844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_DICDI1.078e-4646.67Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB19_BOVIN1.408e-4644.90Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 ... [more]
RAA2A_ARATH1.408e-4645.50Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RAA1C_ARATH1.839e-4648.83Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
YPTV4_VOLCA2.402e-4652.66GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
RGP2_ORYSJ2.402e-4644.65Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
YPTC6_CHLRE3.137e-4646.23Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RAB15_RAT5.350e-4651.23Ras-related protein Rab-15 OS=Rattus norvegicus GN... [more]
RAB15_HUMAN5.350e-4651.23Ras-related protein Rab-15 OS=Homo sapiens GN=RAB1... [more]
RB11B_TOBAC6.988e-4646.98Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185844 ID=CN185844; Name=CN185844; organism=Citrus sinensis; type=EST; length=752bp
GAGGCTCCATCCATCTCTCCCTACGTCGAAGCAGTTTTCATTTGCGATCA
ATTTTTCTTGCCGGAAATTAAAATTTCTCATCATCTCGTCGAAGTTTCTG
TGATTCATTCGATCCAACGCACGGCACGACCATGAATAACGAATACGATT
ATTTGTTTAAGCTTTTGCTCATAGGCGATTCTGGTGTTGGCAAATCGTGT
CTACTTTTGAGGTTTGCTGATGATTCTTATCTGGAAAGCTACATTAGCAC
CATTGGAGTTGACTTTAAAATCCGCACTGTGGAACAAGATGGCAAAACCA
TTAAGCTCCAAATTTGGGACACTGCTGGCCAAGAGCGTTTTAGGACAATA
ACCAGCAGCTACTATCGTGGGGCTCATGGCATCATTGTTGTTTATGATGT
CACAGATCAAGAGAGCTTCAACAATGTAAAGCAATGGCTGAATGAAATTG
ACCGATATGCAAGTGAAAATGTGAACAAGCTTTTAGTTGGTAACAAGTGT
GATCTCACAGCGAACAAAGTTGTGTCCTATGAGACAGCCAAGGCATTTGC
GGATGAAATTGGGATTCCTTTCATGGAAACAAGTGCTAAAAGTGCCACCA
ACGTCGAACAGGCTTTCATGGCCATGGCTGCTTCAATCAAGAATAGGATG
GCAAGCCAACCTGCCTCGAACAATGCTAGGCCGCCAACAGTGCAGATCCG
AGGACAGCCTGTCAACCAGAAATCTGGTTGCTGCTCCACTTAGAAGGGAA
TT
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