CN185844

Overview
NameCN185844
Unique NameCN185844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 88/169 (52.07%), Postives = 123/169 (72.78%), Query Frame = 3
Query:  144 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 650
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +++FN++  WL +  ++++ N+  +L+GNK DL + + V  E  +AFA E G+ FMETSAK+A+NVE+AF+  A  I  ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 88/169 (52.07%), Postives = 123/169 (72.78%), Query Frame = 3
Query:  144 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 650
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +++FN++  WL +  ++++ N+  +L+GNK DL + + V  E  +AFA E G+ FMETSAK+A+NVE+AF+  A  I  ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 88/169 (52.07%), Postives = 123/169 (72.78%), Query Frame = 3
Query:  144 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 650
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +++FN++  WL +  ++++ N+  +L+GNK DL + + V  E  +AFA E G+ FMETSAK+A+NVE+AF+  A  I  ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 88/169 (52.07%), Postives = 123/169 (72.78%), Query Frame = 3
Query:  144 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 650
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +++FN++  WL +  ++++ N+  +L+GNK DL + + V  E  +AFA E G+ FMETSAK+A+NVE+AF+  A  I  ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 88/169 (52.07%), Postives = 123/169 (72.78%), Query Frame = 3
Query:  144 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 650
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +++FN++  WL +  ++++ N+  +L+GNK DL + + V  E  +AFA E G+ FMETSAK+A+NVE+AF+  A  I  ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 88/169 (52.07%), Postives = 123/169 (72.78%), Query Frame = 3
Query:  144 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 650
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +++FN++  WL +  ++++ N+  +L+GNK DL + + V  E  +AFA E G+ FMETSAK+A+NVE+AF+  A  I  ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 180.259 bits (456), Expect = 1.009e-44
Identity = 99/216 (45.83%), Postives = 137/216 (63.43%), Query Frame = 3
Query:  129 TMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR--------------PPTVQIRGQPVNQKSGCC 734
            T ++EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++  + F+ETSA  +TNVE+AF  +   I   ++ +  ++ A               PPT    GQ  N K  CC
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTD--GQKPN-KLQCC 215          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 1.009e-44
Identity = 99/218 (45.41%), Postives = 138/218 (63.30%), Query Frame = 3
Query:  129 TMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR--------------PPTVQIRGQPVNQKSGCCST 740
            T ++EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++  + F+ETSA  +TNVE+AF  +   I   ++ +  ++ A               PPT    GQ  N K  CC +
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTD--GQRPN-KLQCCQS 217          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 180.259 bits (456), Expect = 1.009e-44
Identity = 99/216 (45.83%), Postives = 137/216 (63.43%), Query Frame = 3
Query:  129 TMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR--------------PPTVQIRGQPVNQKSGCC 734
            T ++EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++  + F+ETSA  +TNVE+AF  +   I   ++ +  ++ A               PPT    GQ  N K  CC
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTD--GQKPN-KLQCC 215          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.009e-44
Identity = 101/216 (46.76%), Postives = 137/216 (63.43%), Query Frame = 3
Query:  129 TMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF---------MAMAASIKNRMASQPASNN-----ARPPTVQIRGQPVNQKSGCC 734
            T ++EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++  + F+ETSA  +TNVE+AF         +     I +R A   +  N     + PPT    GQ  N K  CC
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQISDRSAHDESPGNNVVDISVPPTTD--GQKSN-KLQCC 215          
The following BLAST results are available for this feature:
BLAST of CN185844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_PONAB7.726e-4552.07Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE7.726e-4552.07Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA7.726e-4552.07Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN7.726e-4552.07Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK7.726e-4552.07Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA7.726e-4552.07Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RB11B_RAT1.009e-4445.83Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE1.009e-4445.41Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN1.009e-4445.83Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_DISOM1.009e-4446.76Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185844 ID=CN185844; Name=CN185844; organism=Citrus sinensis; type=EST; length=752bp
GAGGCTCCATCCATCTCTCCCTACGTCGAAGCAGTTTTCATTTGCGATCA
ATTTTTCTTGCCGGAAATTAAAATTTCTCATCATCTCGTCGAAGTTTCTG
TGATTCATTCGATCCAACGCACGGCACGACCATGAATAACGAATACGATT
ATTTGTTTAAGCTTTTGCTCATAGGCGATTCTGGTGTTGGCAAATCGTGT
CTACTTTTGAGGTTTGCTGATGATTCTTATCTGGAAAGCTACATTAGCAC
CATTGGAGTTGACTTTAAAATCCGCACTGTGGAACAAGATGGCAAAACCA
TTAAGCTCCAAATTTGGGACACTGCTGGCCAAGAGCGTTTTAGGACAATA
ACCAGCAGCTACTATCGTGGGGCTCATGGCATCATTGTTGTTTATGATGT
CACAGATCAAGAGAGCTTCAACAATGTAAAGCAATGGCTGAATGAAATTG
ACCGATATGCAAGTGAAAATGTGAACAAGCTTTTAGTTGGTAACAAGTGT
GATCTCACAGCGAACAAAGTTGTGTCCTATGAGACAGCCAAGGCATTTGC
GGATGAAATTGGGATTCCTTTCATGGAAACAAGTGCTAAAAGTGCCACCA
ACGTCGAACAGGCTTTCATGGCCATGGCTGCTTCAATCAAGAATAGGATG
GCAAGCCAACCTGCCTCGAACAATGCTAGGCCGCCAACAGTGCAGATCCG
AGGACAGCCTGTCAACCAGAAATCTGGTTGCTGCTCCACTTAGAAGGGAA
TT
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