CN185844

Overview
NameCN185844
Unique NameCN185844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2507 contig Csv1_Contig2507:35..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.147e-64
Identity = 118/197 (59.90%), Postives = 153/197 (77.66%), Query Frame = 3
Query:  144 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 734
            YD+L KLLLIGDSGVGKSCLLLRF+D S+  S+I+TIG+DFKIRT+E +GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD++SF +++ W+  I+++AS++VNK+L+GNKCD+T  KVV     K+ ADE GI F+ETSAK++ NVE+AF+ +A  IK RM   P       P   I   P N+K+ CC
Sbjct:   12 YDFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDTP-----NDPDHTICITPNNKKNTCC 203          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.956e-64
Identity = 112/174 (64.37%), Postives = 147/174 (84.48%), Query Frame = 3
Query:  120 HGTTMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 641
            HG+  + EYD L K+L+IGDSGVGKSC+LLRFAD+ + +SYISTIGVDF IRT+E DGK IKLQIWDTAGQERF+TIT+SYYRGAHG+I+VYD+T  +SFN++K+WL ++DR+AS +V KL+VGNKCDL + + V ++ AK FADE+ IP METSAK +T +++AF+ +A+ IK
Sbjct:   22 HGSESHPEYDMLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIK 195          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.706e-64
Identity = 122/205 (59.51%), Postives = 154/205 (75.12%), Query Frame = 3
Query:  141 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK-VVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPP-TVQIRGQPVNQ---KSGCCST 740
            +YDYL KLLLIGDSGVGKSCLLLRF+D S+  S+I+TIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK D+  +K  V     +A ADE GI F ETSAK+  NVE+ F ++A  IK R+A       A+P  T++   Q  NQ   KS CC +
Sbjct:   11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEAQPSITIKPADQSGNQAAAKSACCGS 215          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.291e-63
Identity = 122/209 (58.37%), Postives = 154/209 (73.68%), Query Frame = 3
Query:  141 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK-VVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQI--------RGQPVNQKSGCCST 740
            +YDYL KLLLIGDSGVGKSCLLLRF+D S+  S+I+TIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK D+  +K  V     +A ADE GI F ETSAK+  NVE+ F ++   IK R++     + A P T++I         GQ   QKS CC T
Sbjct:   11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSD--TDSRAEPATIKISQTDQAAGAGQ-ATQKSACCGT 216          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.509e-61
Identity = 111/180 (61.67%), Postives = 145/180 (80.56%), Query Frame = 3
Query:  144 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM--ASQPASNNA 677
            YDYL KLLLIGDSGVGKSCLLLRF++DS+  S+I+TIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI+++YDVTD++SF+NV+ W + ++++ASENV K+L+GNKCD    + VS+E  +A ADE+G+ F+E SAK+  NV++AF  +A  IK +   A    SN A
Sbjct:    6 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQA 185          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.004e-60
Identity = 118/204 (57.84%), Postives = 148/204 (72.55%), Query Frame = 3
Query:  141 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK-VVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCST*KG 749
            +YD L KLLL+GDSGVGKSCLLLRF DD +  S+I+TIG+DFKI+ V+ DGK +KLQIWDTAGQERFRTITS+YYRGA GII+VYD+TD+ SFNNV+ W+  I+++AS+NVNK+LVGNK DL  +K VVS    +A ADE G  F ETSAK   +VE+AF+A+A  +  RM  + A+            QPV   SG  S  +G
Sbjct:    9 DYDALIKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARMEGEHANQQLLQQQQLSAAQPVRLTSGSPSPAQG 212          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.228e-58
Identity = 105/193 (54.40%), Postives = 147/193 (76.17%), Query Frame = 3
Query:  132 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 710
            M   YDYLFKLLLIGDSGVGK+CLL RF++D++  ++ISTIG+DFKIRTVE DGK IKLQIWDTAGQERFRTIT++YYRGA GI+ VYD+T+++SF+N+K W+  I+ +AS +V ++++GNKCD+   + VS E  +  A + GI F+ETSAKS+ NVE+AF+ +A  I  ++  +   N+ +    +++  P
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLARDIMTKLNKKMNENSLQEAVDKLKSPP 193          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.228e-58
Identity = 104/182 (57.14%), Postives = 144/182 (79.12%), Query Frame = 3
Query:  132 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA 677
            M   YDYLFKLLLIGDSGVGK+CLL RF++D++  ++ISTIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W+  I+ +AS +V ++++GNKCD+   + VS E  +  A + GI F+ETSAKS+TNVE+AF  +A  I  ++  +   +N+
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNS 182          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.228e-58
Identity = 104/182 (57.14%), Postives = 144/182 (79.12%), Query Frame = 3
Query:  132 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA 677
            M   YDYLFKLLLIGDSGVGK+CLL RF++D++  ++ISTIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W+  I+ +AS +V ++++GNKCD+   + VS E  +  A + GI F+ETSAKS+TNVE+AF  +A  I  ++  +   +N+
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNS 182          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.228e-58
Identity = 104/182 (57.14%), Postives = 144/182 (79.12%), Query Frame = 3
Query:  132 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNA 677
            M   YDYLFKLLLIGDSGVGK+CLL RF++D++  ++ISTIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W+  I+ +AS +V ++++GNKCD+   + VS E  +  A + GI F+ETSAKS+TNVE+AF  +A  I  ++  +   +N+
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNS 182          
The following BLAST results are available for this feature:
BLAST of CN185844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8B_DICDI1.147e-6459.90Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB1C_DICDI1.956e-6464.37Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RB1BV_BETVU9.706e-6459.51Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
ARA3_ARATH6.291e-6358.37Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
YPT2_SCHPO4.509e-6161.67GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
YPTV2_VOLCA1.004e-6057.84GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
RAB8_DISOM1.228e-5854.40Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB8B_RAT1.228e-5857.14Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB1.228e-5857.14Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE1.228e-5857.14Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185844 ID=CN185844; Name=CN185844; organism=Citrus sinensis; type=EST; length=752bp
GAGGCTCCATCCATCTCTCCCTACGTCGAAGCAGTTTTCATTTGCGATCA
ATTTTTCTTGCCGGAAATTAAAATTTCTCATCATCTCGTCGAAGTTTCTG
TGATTCATTCGATCCAACGCACGGCACGACCATGAATAACGAATACGATT
ATTTGTTTAAGCTTTTGCTCATAGGCGATTCTGGTGTTGGCAAATCGTGT
CTACTTTTGAGGTTTGCTGATGATTCTTATCTGGAAAGCTACATTAGCAC
CATTGGAGTTGACTTTAAAATCCGCACTGTGGAACAAGATGGCAAAACCA
TTAAGCTCCAAATTTGGGACACTGCTGGCCAAGAGCGTTTTAGGACAATA
ACCAGCAGCTACTATCGTGGGGCTCATGGCATCATTGTTGTTTATGATGT
CACAGATCAAGAGAGCTTCAACAATGTAAAGCAATGGCTGAATGAAATTG
ACCGATATGCAAGTGAAAATGTGAACAAGCTTTTAGTTGGTAACAAGTGT
GATCTCACAGCGAACAAAGTTGTGTCCTATGAGACAGCCAAGGCATTTGC
GGATGAAATTGGGATTCCTTTCATGGAAACAAGTGCTAAAAGTGCCACCA
ACGTCGAACAGGCTTTCATGGCCATGGCTGCTTCAATCAAGAATAGGATG
GCAAGCCAACCTGCCTCGAACAATGCTAGGCCGCCAACAGTGCAGATCCG
AGGACAGCCTGTCAACCAGAAATCTGGTTGCTGCTCCACTTAGAAGGGAA
TT
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