CN185844

Overview
NameCN185844
Unique NameCN185844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RASH_RAT (GTPase HRas OS=Rattus norvegicus GN=Hras1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.187e-23
Identity = 61/163 (37.42%), Postives = 96/163 (58.90%), Query Frame = 3
Query:  156 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 641
            +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A  V S + A+  A   GIP++ETSAK+   VE AF  +   I+
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RASH_HUMAN (GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.187e-23
Identity = 61/163 (37.42%), Postives = 96/163 (58.90%), Query Frame = 3
Query:  156 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 641
            +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A  V S + A+  A   GIP++ETSAK+   VE AF  +   I+
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RASD_DICDI (Ras-like protein rasD OS=Dictyostelium discoideum GN=rasD PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.187e-23
Identity = 59/176 (33.52%), Postives = 96/176 (54.55%), Query Frame = 3
Query:  156 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR 680
            +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  D +T  L I DTAGQE +  +   Y R   G + VY +T + S++ +  +  +I R   ++ V  +LVGNK DL   + VS    +  A     PFME+SAKS  NVE+AF ++   I+  +    +S  A+
Sbjct:    4 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYR-KQVSIDDETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSYDEIASFREQILRVKDKDRVPLILVGNKADLDHERQVSVNEGQELAKGFNCPFMESSAKSRINVEEAFYSLVREIRKELKGDQSSGKAQ 178          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAS1_PHYPO (Ras-like protein 1 OS=Physarum polycephalum GN=RAS1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.187e-23
Identity = 58/163 (35.58%), Postives = 92/163 (56.44%), Query Frame = 3
Query:  156 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 641
            +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  D +T  L I DTAGQE +  +   Y R   G + VY +T + SF+ +  +  +I R   ++ V  ++VGNKCDL   + V+    +  A   G PFMETSAKS  NVE++F  +   I+
Sbjct:    4 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYR-KQVTIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDKVPMIVVGNKCDLEGERQVTTGEGQDLARSFGCPFMETSAKSRVNVEESFYQLVREIR 165          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAS1_NEUCR (Protein ras-1 OS=Neurospora crassa GN=ras-1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.187e-23
Identity = 65/211 (30.81%), Postives = 110/211 (52.13%), Query Frame = 3
Query:  132 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR--------MASQPASNNARPPTVQIRGQPVNQKSGCCS 737
            M N++   +KL+++G  GVGKSCL ++     +L+ Y  TI   ++ +    D +   L I DTAGQE +  +   Y R   G ++V+ +  +ESF  ++ +  +I R    ++   ++VGNK DL   +VVS +  +A A E G  ++ETSAK+  NVE AF  +   I+            +  A+NN     + +  + V  ++GCC+
Sbjct:    1 MANKFTREYKLVVVGGGGVGKSCLTIQLIQGHFLDEYDPTIEDSYR-KQCTIDNEVALLDILDTAGQEEYSAMREQYMRTGEGFLLVFAINSRESFEEIRIYQQQILRVKDRDSFPMIIVGNKYDLRGERVVSEQEGQALAAEFGTKYIETSAKTQHNVENAFYDLVREIRKEDKKLGEKVGGTSFANNNGAVKQMDVGDEDV--QAGCCA 208          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAS_SCHPO (Ras-like protein 1 OS=Schizosaccharomyces pombe GN=ras1 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.857e-23
Identity = 63/201 (31.34%), Postives = 106/201 (52.74%), Query Frame = 3
Query:  132 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKL-LVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK--NRMASQPASNNARPPTVQIRGQPVNQKS 725
            M + Y   +KL+++GD GVGKS L ++     +++ Y  TI   ++ +  E DG+   L + DTAGQE +  +   Y R   G ++VY++T + SF+ +  +  +I R   ++   + LV NKCDL A +VVS    +  A  +   ++ETSAK   NVE+AF ++  +I+  N+   +   N     T Q+      + S
Sbjct:    1 MRSTYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYR-KKCEIDGEGALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRRYNKSEEKGFQNKQAVQTAQVPASTAKRAS 200          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RASH_MSVNS (GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RAS PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.857e-23
Identity = 61/163 (37.42%), Postives = 96/163 (58.90%), Query Frame = 3
Query:  156 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 641
            +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A  V S + A+  A   GIP++ETSAK+   VE AF  +   I+
Sbjct:    4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RABO_DICDI (Ras-related protein RabO OS=Dictyostelium discoideum GN=rabO PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.731e-23
Identity = 65/192 (33.85%), Postives = 105/192 (54.69%), Query Frame = 3
Query:  132 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLN-EIDRYASENVNKLLVGNKCDLTANK-VVSYETAKAFAD--------EIGIPFMETSAKSATNVEQAFMAMA-ASIKNRMASQPASNN 674
            M+ +   L +++L+GD  VGK+     F    +  S    IGVDF ++ +  D + ++LQ+WDT GQERF+TIT SY+R     ++ + V DQ+SF N+  W +   ++Y   N   +LVGNK DL   K V++ + A+ +          +  IP+ ETSAK+  N+ + F + A   +KN +     +NN
Sbjct:    1 MDIDNSILIRVVLLGDYCVGKTTTGFVFDGKQFDFSRNCNIGVDFFVKHIVVDNQCVRLQVWDTGGQERFKTITRSYFRNTSCCLLFFSVDDQKSFENIDMWYSLAFEKYDLLNYPVVLVGNKIDLPQEKHVITKKMAEEWCKNQQTKLNLKFSIPYFETSAKNNININEIFYSAAELGLKNIVFKNNNNNN 192          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RASH_CHICK (GTPase HRas OS=Gallus gallus GN=HRAS1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.873e-23
Identity = 60/163 (36.81%), Postives = 95/163 (58.28%), Query Frame = 3
Query:  156 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 641
            +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A + V    A+  A   GIP++ETSAK+   VE AF  +   I+
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLPA-RTVETRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAS2_PHYPO (Ras-like protein 2 OS=Physarum polycephalum GN=RAS-2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.873e-23
Identity = 56/166 (33.73%), Postives = 93/166 (56.02%), Query Frame = 3
Query:  156 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM 650
            +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  D +T  L I DTAGQE +  +   Y R   G ++VY +T + SF+ +  +  +I R   ++ V  +L GNKCDL + + V+    +  A   G PF+ETSAK+  NVE+ F  +   I+  +
Sbjct:    6 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYR-KQVVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFVMVYSITSRSSFDEINAFREQILRVKDKDTVPMVLAGNKCDLASERQVTTNEGQELARAFGCPFVETSAKARLNVEECFYGLVREIRKEV 170          
The following BLAST results are available for this feature:
BLAST of CN185844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASH_RAT2.187e-2337.42GTPase HRas OS=Rattus norvegicus GN=Hras1 PE=1 SV=... [more]
RASH_HUMAN2.187e-2337.42GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1[more]
RASD_DICDI2.187e-2333.52Ras-like protein rasD OS=Dictyostelium discoideum ... [more]
RAS1_PHYPO2.187e-2335.58Ras-like protein 1 OS=Physarum polycephalum GN=RAS... [more]
RAS1_NEUCR2.187e-2330.81Protein ras-1 OS=Neurospora crassa GN=ras-1 PE=2 S... [more]
RAS_SCHPO2.857e-2331.34Ras-like protein 1 OS=Schizosaccharomyces pombe GN... [more]
RASH_MSVNS2.857e-2337.42GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RA... [more]
RABO_DICDI3.731e-2333.85Ras-related protein RabO OS=Dictyostelium discoide... [more]
RASH_CHICK4.873e-2336.81GTPase HRas OS=Gallus gallus GN=HRAS1 PE=1 SV=1[more]
RAS2_PHYPO4.873e-2333.73Ras-like protein 2 OS=Physarum polycephalum GN=RAS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185844 ID=CN185844; Name=CN185844; organism=Citrus sinensis; type=EST; length=752bp
GAGGCTCCATCCATCTCTCCCTACGTCGAAGCAGTTTTCATTTGCGATCA
ATTTTTCTTGCCGGAAATTAAAATTTCTCATCATCTCGTCGAAGTTTCTG
TGATTCATTCGATCCAACGCACGGCACGACCATGAATAACGAATACGATT
ATTTGTTTAAGCTTTTGCTCATAGGCGATTCTGGTGTTGGCAAATCGTGT
CTACTTTTGAGGTTTGCTGATGATTCTTATCTGGAAAGCTACATTAGCAC
CATTGGAGTTGACTTTAAAATCCGCACTGTGGAACAAGATGGCAAAACCA
TTAAGCTCCAAATTTGGGACACTGCTGGCCAAGAGCGTTTTAGGACAATA
ACCAGCAGCTACTATCGTGGGGCTCATGGCATCATTGTTGTTTATGATGT
CACAGATCAAGAGAGCTTCAACAATGTAAAGCAATGGCTGAATGAAATTG
ACCGATATGCAAGTGAAAATGTGAACAAGCTTTTAGTTGGTAACAAGTGT
GATCTCACAGCGAACAAAGTTGTGTCCTATGAGACAGCCAAGGCATTTGC
GGATGAAATTGGGATTCCTTTCATGGAAACAAGTGCTAAAAGTGCCACCA
ACGTCGAACAGGCTTTCATGGCCATGGCTGCTTCAATCAAGAATAGGATG
GCAAGCCAACCTGCCTCGAACAATGCTAGGCCGCCAACAGTGCAGATCCG
AGGACAGCCTGTCAACCAGAAATCTGGTTGCTGCTCCACTTAGAAGGGAA
TT
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