CN185844

Overview
NameCN185844
Unique NameCN185844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAP1A_RAT (Ras-related protein Rap-1A OS=Rattus norvegicus GN=Rap1a PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.561e-21
Identity = 59/166 (35.54%), Postives = 93/166 (56.02%), Query Frame = 3
Query:  156 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKSATNVEQAFMAMAASIKNR 647
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +E+V  +LVGNKCDL   +VV  E  +  A +     F+E+SAKS  NV + F  +   I  +
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAP1A_MOUSE (Ras-related protein Rap-1A OS=Mus musculus GN=Rap1a PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.561e-21
Identity = 59/166 (35.54%), Postives = 93/166 (56.02%), Query Frame = 3
Query:  156 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKSATNVEQAFMAMAASIKNR 647
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +E+V  +LVGNKCDL   +VV  E  +  A +     F+E+SAKS  NV + F  +   I  +
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAP1A_HUMAN (Ras-related protein Rap-1A OS=Homo sapiens GN=RAP1A PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.561e-21
Identity = 59/166 (35.54%), Postives = 93/166 (56.02%), Query Frame = 3
Query:  156 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKSATNVEQAFMAMAASIKNR 647
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +E+V  +LVGNKCDL   +VV  E  +  A +     F+E+SAKS  NV + F  +   I  +
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAP1A_BOVIN (Ras-related protein Rap-1A OS=Bos taurus GN=RAP1A PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.561e-21
Identity = 59/166 (35.54%), Postives = 93/166 (56.02%), Query Frame = 3
Query:  156 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKSATNVEQAFMAMAASIKNR 647
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +E+V  +LVGNKCDL   +VV  E  +  A +     F+E+SAKS  NV + F  +   I  +
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: DJ27B_XENLA (DnaJ homolog subfamily C member 27-B OS=Xenopus laevis GN=dnajc27-B PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.561e-21
Identity = 50/168 (29.76%), Postives = 94/168 (55.95%), Query Frame = 3
Query:  159 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS--------ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 638
            K++ +G++ VGKSC++ R+ +  ++  Y +TIG+D+ +  V+   + IK+ I+D AG   F  + + +Y+   G+I+VYDV  +ESF ++  WL E+ +           +N+   +  NK D T ++ V     + +++  G  + ETSA+S   + + F A  +SI
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVPKYQATIGIDYGVTKVQIKDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKESFESLDAWLAEMKQELGPQINIDNLDNIVFAVCANKIDSTKHRCVDESEGRLWSESKGFLYFETSAQSGEGINEMFQAFYSSI 185          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RASU_DICDI (Ras-like protein rasU OS=Dictyostelium discoideum GN=rasU PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.957e-21
Identity = 53/165 (32.12%), Postives = 92/165 (55.76%), Query Frame = 3
Query:  135 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 629
            N+  +   +L ++GD GVGK+ + ++F  + ++  Y  TI  D   +    D +   L I DTAGQ+    I + + +   G I+VY VT + SF+ ++ +L++I    SE V  +++ NK DL   + V+Y+  + FA+  G+ FME SAK   N+++ F  +A
Sbjct:    8 NSNNNNSMRLCVMGDGGVGKTSITIQFISNHFVNCYDPTIE-DLYRKQCLIDDQVYMLDILDTAGQDELNAIRNHWIKSCEGFILVYSVTSRSSFDQIQSFLDQIKFLKSEKVPIIMIANKSDLDDERQVTYQEGENFANRFGMSFMEVSAKYKLNIDEVFNQIA 171          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAP1B_RAT (Ras-related protein Rap-1b OS=Rattus norvegicus GN=Rap1b PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.957e-21
Identity = 58/166 (34.94%), Postives = 93/166 (56.02%), Query Frame = 3
Query:  156 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKSATNVEQAFMAMAASIKNR 647
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL   +VV  E  +  A +     F+E+SAKS  NV + F  +   I  +
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWSNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB24_MOUSE (Ras-related protein Rab-24 OS=Mus musculus GN=Rab24 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.957e-21
Identity = 58/162 (35.80%), Postives = 87/162 (53.70%), Query Frame = 3
Query:  159 KLLLIGDSGVGKSCLLLRFADDSYLES-YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL----TANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMA 629
            K++++G   VGK+ L+ R+  D +L   Y +TIG  F  + +    +T+ L IWDTAG ER+  ++  YYRGA   IV YD+TD  SF   K W+ E+ R   E     L G K DL       + V +   + +AD I     ETS+K+  +V++ F  +A
Sbjct:    9 KVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMCVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL-RSLEEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQKVA 169          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: DJC27_RAT (DnaJ homolog subfamily C member 27 OS=Rattus norvegicus GN=Dnajc27 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.957e-21
Identity = 47/165 (28.48%), Postives = 94/165 (56.97%), Query Frame = 3
Query:  159 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-----ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 638
            K++ +G++ VGKSC++ R+ +  ++  Y++TIG+D+ +  V+   + IK+ I+D AG   F  + + +Y+   G+I+VYDV  ++SF+ +  WL E+ +        EN+  ++  NK D + ++ +     + +A+  G  + ETSA++   + + F     SI
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFFEVRNEFYKDTQGVILVYDVGQKDSFDALDSWLAEMKQELGPHGNMENIVFVVCANKIDCSKHRCIDESEGRLWAESRGFLYFETSAQTGEGINEMFQTFYMSI 182          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RB32D_DICDI (Ras-related protein Rab-32D OS=Dictyostelium discoideum GN=rab32D PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.780e-21
Identity = 56/169 (33.14%), Postives = 94/169 (55.62%), Query Frame = 3
Query:  159 KLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNK---------LLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 638
            KL+LIGD  VGK+ +L R     + E Y STIG DF  +T  Q+     +Q+WDTAGQE++  +TS+++R +  +I+V+D++++ SF N+  W  +   + S+++N          LL+ NK D     V   E  +   D     + E SAKS+ N++++ + +   I
Sbjct:   11 KLILIGDVNVGKTSILHRLIFSKFTEEYKSTIGADFLSKTFYQNDIITHIQLWDTAGQEKYWCLTSAFWRTSDAVILVFDISNESSFRNLNFWYKQ---FKSKSINPDGTEKQLPILLLANKSDSLTRAVDQSEINQWCTDHKVNLYYEVSAKSSINIKESILKLVEVI 176          
The following BLAST results are available for this feature:
BLAST of CN185844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP1A_RAT4.561e-2135.54Ras-related protein Rap-1A OS=Rattus norvegicus GN... [more]
RAP1A_MOUSE4.561e-2135.54Ras-related protein Rap-1A OS=Mus musculus GN=Rap1... [more]
RAP1A_HUMAN4.561e-2135.54Ras-related protein Rap-1A OS=Homo sapiens GN=RAP1... [more]
RAP1A_BOVIN4.561e-2135.54Ras-related protein Rap-1A OS=Bos taurus GN=RAP1A ... [more]
DJ27B_XENLA4.561e-2129.76DnaJ homolog subfamily C member 27-B OS=Xenopus la... [more]
RASU_DICDI5.957e-2132.12Ras-like protein rasU OS=Dictyostelium discoideum ... [more]
RAP1B_RAT5.957e-2134.94Ras-related protein Rap-1b OS=Rattus norvegicus GN... [more]
RAB24_MOUSE5.957e-2135.80Ras-related protein Rab-24 OS=Mus musculus GN=Rab2... [more]
DJC27_RAT5.957e-2128.48DnaJ homolog subfamily C member 27 OS=Rattus norve... [more]
RB32D_DICDI7.780e-2133.14Ras-related protein Rab-32D OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185844 ID=CN185844; Name=CN185844; organism=Citrus sinensis; type=EST; length=752bp
GAGGCTCCATCCATCTCTCCCTACGTCGAAGCAGTTTTCATTTGCGATCA
ATTTTTCTTGCCGGAAATTAAAATTTCTCATCATCTCGTCGAAGTTTCTG
TGATTCATTCGATCCAACGCACGGCACGACCATGAATAACGAATACGATT
ATTTGTTTAAGCTTTTGCTCATAGGCGATTCTGGTGTTGGCAAATCGTGT
CTACTTTTGAGGTTTGCTGATGATTCTTATCTGGAAAGCTACATTAGCAC
CATTGGAGTTGACTTTAAAATCCGCACTGTGGAACAAGATGGCAAAACCA
TTAAGCTCCAAATTTGGGACACTGCTGGCCAAGAGCGTTTTAGGACAATA
ACCAGCAGCTACTATCGTGGGGCTCATGGCATCATTGTTGTTTATGATGT
CACAGATCAAGAGAGCTTCAACAATGTAAAGCAATGGCTGAATGAAATTG
ACCGATATGCAAGTGAAAATGTGAACAAGCTTTTAGTTGGTAACAAGTGT
GATCTCACAGCGAACAAAGTTGTGTCCTATGAGACAGCCAAGGCATTTGC
GGATGAAATTGGGATTCCTTTCATGGAAACAAGTGCTAAAAGTGCCACCA
ACGTCGAACAGGCTTTCATGGCCATGGCTGCTTCAATCAAGAATAGGATG
GCAAGCCAACCTGCCTCGAACAATGCTAGGCCGCCAACAGTGCAGATCCG
AGGACAGCCTGTCAACCAGAAATCTGGTTGCTGCTCCACTTAGAAGGGAA
TT
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