CN185844

Overview
NameCN185844
Unique NameCN185844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2507 contig Csv1_Contig2507:35..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.819e-49
Identity = 93/204 (45.59%), Postives = 138/204 (67.65%), Query Frame = 3
Query:  135 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA----SQPASNNARPPTVQIRGQPVNQKSGCC 734
            +  +DY+FKLL+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+   +V+S E  +   +++G  F ETSAK   NV+Q F  +   I ++M+    + PA   A+  T      P  Q +  C
Sbjct:   24 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQNTRLKETPPPPQPNCAC 227          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.152e-48
Identity = 96/205 (46.83%), Postives = 134/205 (65.37%), Query Frame = 3
Query:  135 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM------ASQPASNNARPPTVQIRGQPVNQKSGC 731
            +  +DY+FKLLLIG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV +  K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ +N   +LVGNKCDL   +VVS E  +  A ++G  F E SAK   NV+Q F  +   I ++M      +S P SN   P    +   P  Q S C
Sbjct:   16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVFERLVDIICDKMNESLEPSSSPGSNGKGP---ALGDTPPPQPSSC 217          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.504e-48
Identity = 92/203 (45.32%), Postives = 140/203 (68.97%), Query Frame = 3
Query:  135 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA----SQPASNNARPPTVQIRGQPVNQKSGC 731
            +  +DY+FKLL+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+   +V+S E  +   +++G  F ETSAK   NV+Q F  +   I ++M+    + PA   A+  T +++  P   +  C
Sbjct:   24 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQNT-RLKETPPPPQPNC 225          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.965e-48
Identity = 95/204 (46.57%), Postives = 133/204 (65.20%), Query Frame = 3
Query:  135 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM-----ASQPASNNARPPTVQIRGQPVNQKSGC 731
            +  +DY+FKLLLIG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV +  K IKLQIWDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ +N   +LVGNKCDL   +VV  E  +  AD++G  F E SAK   NV+Q F  +   I  +M      S  + +N + P V     P  Q S C
Sbjct:   16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSSSSGSNGKGPAV--GDAPAPQPSSC 217          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.965e-48
Identity = 92/203 (45.32%), Postives = 139/203 (68.47%), Query Frame = 3
Query:  135 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA----SQPASNNARPPTVQIRGQPVNQKSGC 731
            +  +DY+FKLL+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +L GNKCD+   +VVS E  +   +++G  F ETSAK   NV+Q F  +   I ++M+    + PA   A+  T +++  P   +  C
Sbjct:   24 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQST-RLKETPPPPQPNC 225          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.965e-48
Identity = 92/203 (45.32%), Postives = 139/203 (68.47%), Query Frame = 3
Query:  135 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA----SQPASNNARPPTVQIRGQPVNQKSGC 731
            +  +DY+FKLL+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV ++ K IKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +L GNKCD+   +VVS E  +   +++G  F ETSAK   NV+Q F  +   I ++M+    + PA   A+  T +++  P   +  C
Sbjct:   24 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQST-RLKETPPPPQPNC 225          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB26_HUMAN (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 2.566e-48
Identity = 89/180 (49.44%), Postives = 129/180 (71.67%), Query Frame = 3
Query:  144 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR 680
            YD  FK++L+GDSGVGK+CLL+RF D ++L  ++IST+G+DF+ + ++ DG  +KLQ+WDTAGQERFR++T +YYR AH ++++YDVT++ SF+N++ WL EI  YA  +V  +L+GNK D    +VV  E  +  A E G+PFMETSAK+  NV+ AF A+A  +K R    P+    R
Sbjct:   60 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKQRSMKAPSEPRFR 239          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.466e-48
Identity = 87/175 (49.71%), Postives = 129/175 (73.71%), Query Frame = 3
Query:  144 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPA 665
            YD  FK++L+GDSGVGK+CLL+RF D ++L  ++IST+G+DF+ + V+ DG  +KLQIWDTAGQERFR++T +YYR AH ++++YDVT++ SF++++ WL EI  +A ++V  +L+GNK D    + V  E A+  A + G+PFMETSAK+  NV+ AF A+A  +K R    P+
Sbjct:   60 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVDSAQERAVKREDAEKLAKDYGLPFMETSAKTGLNVDLAFTAIAKELKQRHTKAPS 234          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.751e-48
Identity = 101/208 (48.56%), Postives = 134/208 (64.42%), Query Frame = 3
Query:  144 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ--PASNN--------ARPPTVQIRGQPVNQKSGCCS 737
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +LVGNKCDL+  + VSYE  + FA E G+ FME SAK+A NVE+AF+  A +I  ++       SN         A P      G   +Q  GCCS
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNESYGIKVGYAIPGQSGGAGSSSSQGGGCCS 210          
BLAST of CN185844 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.274e-47
Identity = 84/173 (48.55%), Postives = 127/173 (73.41%), Query Frame = 3
Query:  135 NNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 653
            +  +DY+FKLL+IG+S VGK+  L R+ADD++  +++ST+G+DFK++TV +  K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+   +VV  E  +  A+++G  F E SAK   +V QAF  +  +I ++M+
Sbjct:   16 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 188          
The following BLAST results are available for this feature:
BLAST of CN185844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3C_HUMAN8.819e-4945.59Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]
RAB3D_RAT1.152e-4846.83GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RAB3C_BOVIN1.504e-4845.32Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]
RAB3D_HUMAN1.965e-4846.57Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB3C_RAT1.965e-4845.32Ras-related protein Rab-3C OS=Rattus norvegicus GN... [more]
RAB3C_MOUSE1.965e-4845.32Ras-related protein Rab-3C OS=Mus musculus GN=Rab3... [more]
RAB26_HUMAN2.566e-4849.44Ras-related protein Rab-26 OS=Homo sapiens GN=RAB2... [more]
RAB26_BOVIN7.466e-4849.71Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
RAB2B_MAIZE9.751e-4848.56Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RAB3B_MOUSE1.274e-4748.55Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185844 ID=CN185844; Name=CN185844; organism=Citrus sinensis; type=EST; length=752bp
GAGGCTCCATCCATCTCTCCCTACGTCGAAGCAGTTTTCATTTGCGATCA
ATTTTTCTTGCCGGAAATTAAAATTTCTCATCATCTCGTCGAAGTTTCTG
TGATTCATTCGATCCAACGCACGGCACGACCATGAATAACGAATACGATT
ATTTGTTTAAGCTTTTGCTCATAGGCGATTCTGGTGTTGGCAAATCGTGT
CTACTTTTGAGGTTTGCTGATGATTCTTATCTGGAAAGCTACATTAGCAC
CATTGGAGTTGACTTTAAAATCCGCACTGTGGAACAAGATGGCAAAACCA
TTAAGCTCCAAATTTGGGACACTGCTGGCCAAGAGCGTTTTAGGACAATA
ACCAGCAGCTACTATCGTGGGGCTCATGGCATCATTGTTGTTTATGATGT
CACAGATCAAGAGAGCTTCAACAATGTAAAGCAATGGCTGAATGAAATTG
ACCGATATGCAAGTGAAAATGTGAACAAGCTTTTAGTTGGTAACAAGTGT
GATCTCACAGCGAACAAAGTTGTGTCCTATGAGACAGCCAAGGCATTTGC
GGATGAAATTGGGATTCCTTTCATGGAAACAAGTGCTAAAAGTGCCACCA
ACGTCGAACAGGCTTTCATGGCCATGGCTGCTTCAATCAAGAATAGGATG
GCAAGCCAACCTGCCTCGAACAATGCTAGGCCGCCAACAGTGCAGATCCG
AGGACAGCCTGTCAACCAGAAATCTGGTTGCTGCTCCACTTAGAAGGGAA
TT
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