CN185843

Overview
NameCN185843
Unique NameCN185843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.103e-33
Identity = 70/173 (40.46%), Postives = 109/173 (63.01%), Query Frame = -1
Query:  293 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-----KNRMASQPASNNARPPTVQIR-------GQPVNQKSGCCST 775
            V+F+ RT+    K++K QIWDTAGQER+R +TS+YYRGA G ++VYD+T +++F+++ +WL E+  +A  N+  +L+GNK DL   + V  E AK FA + G+ F+ETSA  ATN+E AF+ +   I     K  +A+    +N  P ++  +       GQ + +K  CCS+
Sbjct:   50 VEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADDNQSNGNPASLTGKKILVPGPGQVIPEKKACCSS 222          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB3B_RAT (Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 7.103e-33
Identity = 63/132 (47.73%), Postives = 94/132 (71.21%), Query Frame = -1
Query:  380 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 775
            +DFK++TV +  K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+   +V+  E  +  A+++G  F E SAK   +V QAF  +  +I ++M+
Sbjct:   57 IDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVIPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 188          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 7.103e-33
Identity = 64/132 (48.48%), Postives = 94/132 (71.21%), Query Frame = -1
Query:  380 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMA 775
            +DFK++TV +  K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+   +VV  E  +  A+++G  F E SAK   +V QAF  +  +I ++M+
Sbjct:   57 IDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 188          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.277e-33
Identity = 68/158 (43.04%), Postives = 97/158 (61.39%), Query Frame = -1
Query:  296 FKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCS 769
            F  +TV  D  T+K +IWDTAGQER+ ++   YYRGA   IVVYD+T++ESF   K W+ E+ R AS N+   L GNK DL   + V ++ A+++AD+  + FMETSAK++ NV + FMA+A  +       P +N+AR   V +       +S CCS
Sbjct:   57 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPAQPARSQCCS 214          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.277e-33
Identity = 68/158 (43.04%), Postives = 97/158 (61.39%), Query Frame = -1
Query:  296 FKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCS 769
            F  +TV  D  T+K +IWDTAGQER+ ++   YYRGA   IVVYD+T++ESF   K W+ E+ R AS N+   L GNK DL   + V ++ A+++AD+  + FMETSAK++ NV + FMA+A  +       P +N+AR   V +       +S CCS
Sbjct:   57 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPTQPTRSQCCS 214          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.277e-33
Identity = 68/158 (43.04%), Postives = 97/158 (61.39%), Query Frame = -1
Query:  296 FKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCS 769
            F  +TV  D  T+K +IWDTAGQER+ ++   YYRGA   IVVYD+T++ESF   K W+ E+ R AS N+   L GNK DL   + V ++ A+++AD+  + FMETSAK++ NV + FMA+A  +       P +N+AR   V +       +S CCS
Sbjct:   57 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPTQPTRSQCCS 214          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.212e-32
Identity = 74/171 (43.27%), Postives = 105/171 (61.40%), Query Frame = -1
Query:  296 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPV-----------NQKSGCCS 775
            V+F  R++  DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+T   +F NV++WL E+  +A  N+  +LVGNK DL   + V  E A+AF +  G+ F+ETSA  +TNVE+AF  +   I + ++ +   +    P +   G+ V            +K GCCS
Sbjct:   47 VEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRPKIG-EGRDVIVIDNAHDDGGKKKGGCCS 216          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.212e-32
Identity = 75/176 (42.61%), Postives = 107/176 (60.80%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM-----------------ASQPASNNARPPTVQIRGQPVNQKSGCC 775
            V+F  R V+ DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  +++S N+  +L+GNK DL + + V  E  +AFA E G+ FMETSAK+A NVE+A++  A  I  ++                   Q  +++  P + Q     +   SGCC
Sbjct:   41 VEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQGLFDVHNEANGIKIGPQQSITSSVGPCSPQQNVSDIGPDSGCC 216          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.212e-32
Identity = 71/170 (41.76%), Postives = 108/170 (63.53%), Query Frame = -1
Query:  293 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIR-GQPV--------NQKSGCCST 775
            V+F  RT+  +G+T+K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +A  N+  +L+GNK DL   + V+ E A+++A++ G+ F+ETSA  A NVE+AF  + + +   ++ +  S++       I+ GQ +        N K  CCS+
Sbjct:   47 VEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTTANANIKEGQTIDVAATSESNAKKPCCSS 216          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.212e-32
Identity = 71/168 (42.26%), Postives = 97/168 (57.74%), Query Frame = -1
Query:  296 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKS--------GCCS 775
            V+F  +T   +GK +K QIWDTAGQER+R ITS+YYRGA G +++YDVT   +F N  +WL E+  +   N+  +L+GNKCDL     V  E AKAFA+   + FMETSA  ATNVE AF  +   I   ++ +          +  +G+ +N K         GCCS
Sbjct:   48 VEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGGGESADLPGKGETINVKEDGSVLKRMGCCS 215          
The following BLAST results are available for this feature:
BLAST of CN185843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11D_TOBAC7.103e-3340.46Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RAB3B_RAT7.103e-3347.73Ras-related protein Rab-3B OS=Rattus norvegicus GN... [more]
RAB3B_HUMAN7.103e-3348.48Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
RAB5A_MOUSE9.277e-3343.04Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB5A_MACFA9.277e-3343.04Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_CANFA9.277e-3343.04Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
YPTC6_CHLRE1.212e-3243.27Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RAB2B_MOUSE1.212e-3242.61Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAA2A_ARATH1.212e-3241.76Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RAA1A_ARATH1.212e-3242.26Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185843 ID=CN185843; Name=CN185843; organism=Citrus sinensis; type=EST; length=775bp
GAGAGAGAACATTTATATATTAGCTACATCGATGACGAACAATATACAGT
ATAGAGGACAGCAAGATAGATACCGCTATTCACCAATATTCCTAATTTGT
ACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAATGGAAACTTTAG
TAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGACAATAAACCTTC
ATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATTCCACAAAGAAC
ATTGATAAACATCAGAAATTCACCAACACTAATTCCCTTCTAAGTGGAGC
AGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCTGCACTGTTGGC
GGCCTAGCATTGTTCGAGGCAGGTTGGCTTGCCATCCTATTCTTGATTGA
AGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGCACTTTTAGCAC
TTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATGCCTTGGCTGTC
TCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTGTTACCAACTAA
AAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTCATTCAGCCATT
GCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCATAAACAACAATG
ATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTCCTAAAACGCTC
TTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTTGCCATCTTGGT
CCACAGTGCGGATTTTAAAGTCAAC
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