CN185843

Overview
NameCN185843
Unique NameCN185843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.582e-32
Identity = 65/129 (50.39%), Postives = 94/129 (72.87%), Query Frame = -1
Query:  389 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKN 775
            V+F+ RT+  D KT+K QIWDTAGQER+R +TS+YYRGA G ++VYD+T +++F+++ +WL E+  +A +N+  +L+GNKCDL   + V  E AK FA++ G+ F+ETSA  ATNVE AF  +   I N
Sbjct:   52 VEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYN 180          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.582e-32
Identity = 78/168 (46.43%), Postives = 106/168 (63.10%), Query Frame = -1
Query:  296 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK---NRMASQPASNNARPPTVQIR---GQPVN--QKSGCCS 775
            V+F  R+++ D K IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV+ WL E+  +   N+  +LVGNK DL     V  E AK+FA++  + FMETSA  ATNVE AF  +   I    ++ A + AS +A  P+   +   G+ V+  +K GCCS
Sbjct:   48 VEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVPSKGDKIDIGKDVSAVKKGGCCS 215          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.067e-32
Identity = 67/158 (42.41%), Postives = 97/158 (61.39%), Query Frame = -1
Query:  296 FKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCS 769
            F  +TV  D  T+K +IWDTAGQER+ ++   YYRGA   IVVYD+T++ESF   K W+ E+ R AS N+   L GNK DL   + V ++ A+++AD+  + FMETSAK++ NV + FMA+A  +       P +N+AR   V +       ++ CCS
Sbjct:   57 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPTQPTRNQCCS 214          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB12_MOUSE (Ras-related protein Rab-12 OS=Mus musculus GN=Rab12 PE=1 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 2.067e-32
Identity = 69/152 (45.39%), Postives = 101/152 (66.45%), Query Frame = -1
Query:  323 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 775
            VDFKI+TV+  GK I+LQIWDTAGQERF +ITS+YYR A GII+VYD+T +E+F+++ +W+  ID+YASE+   LLVGNK D   ++ +S +  + FA +I G+ F E SAK   NV++ F+ +   I  +M      N      + ++ +P
Sbjct:   76 VDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDVLRNELSNSILSLQPEP 227          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.699e-32
Identity = 67/158 (42.41%), Postives = 96/158 (60.76%), Query Frame = -1
Query:  296 FKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCS 769
            F  +TV  D  T+K +IWDTAGQER+ ++   YYRGA   IVVYD+T++ESF   K W+ E+ R AS N+   L GNK DL   + V ++ A+++AD+  + FMETSAK++ NV + FMA+A  +       P +N+ R   V +       +S CCS
Sbjct:   57 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSTRGRGVDLTEPTQPTRSQCCS 214          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.699e-32
Identity = 67/143 (46.85%), Postives = 97/143 (67.83%), Query Frame = -1
Query:  347 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPP 775
            VDF I+TV+ +G+ +KLQIWDTAGQERFR+IT SYYR A+ +I+ YD+T +ESF  + +WL EI++YAS  V  +LVGNK DL   + VS + A+ F++   + ++ETSAK + NVE+ F+ +A  + +        NN   P
Sbjct:   44 VDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSP 186          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.699e-32
Identity = 67/143 (46.85%), Postives = 97/143 (67.83%), Query Frame = -1
Query:  347 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPP 775
            VDF I+TV+ +G+ +KLQIWDTAGQERFR+IT SYYR A+ +I+ YD+T +ESF  + +WL EI++YAS  V  +LVGNK DL   + VS + A+ F++   + ++ETSAK + NVE+ F+ +A  + +        NN   P
Sbjct:   44 VDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSP 186          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.699e-32
Identity = 67/143 (46.85%), Postives = 97/143 (67.83%), Query Frame = -1
Query:  347 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPP 775
            VDF I+TV+ +G+ +KLQIWDTAGQERFR+IT SYYR A+ +I+ YD+T +ESF  + +WL EI++YAS  V  +LVGNK DL   + VS + A+ F++   + ++ETSAK + NVE+ F+ +A  + +        NN   P
Sbjct:   44 VDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSP 186          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.699e-32
Identity = 62/128 (48.44%), Postives = 92/128 (71.88%), Query Frame = -1
Query:  395 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASI 775
            VDF +R++D DGK +K+Q+WDTAGQERFRTIT SYYR AH  I+ YD+T + +F ++  W++EI++Y + NV  +L+GNKCDL   + V +E A   A++ G +  +ETSAK + N+E+ F+ MA  +
Sbjct:   52 VDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKEL 179          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB19_BOVIN (Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.699e-32
Identity = 66/153 (43.14%), Postives = 100/153 (65.36%), Query Frame = -1
Query:  320 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPV 775
            VDF +R ++ DGK +K+Q+WDTAGQERFRTIT SYYR AH  I+ YD+T + +F +V  W++EI++Y + N+  +L+GNKCDL   + V +E A   A++ G +  +ETSAK + N+++ F+ MA  +  R  S P      P ++ +   PV
Sbjct:   52 VDFTVRALEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCDLWEKRHVLFEDACILAEKYGLLAVLETSAKESKNIDEVFVLMARELMAR-HSLPLYGEGAPGSLPLESTPV 203          
The following BLAST results are available for this feature:
BLAST of CN185843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_LOTJA1.582e-3250.39Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RAA1C_ARATH1.582e-3246.43Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RAB5A_HUMAN2.067e-3242.41Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB12_MOUSE2.067e-3245.39Ras-related protein Rab-12 OS=Mus musculus GN=Rab1... [more]
RAB5A_BOVIN2.699e-3242.41Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]
RAB30_MOUSE2.699e-3246.85Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN2.699e-3246.85Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN2.699e-3246.85Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]
RAB19_HUMAN2.699e-3248.44Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]
RAB19_BOVIN2.699e-3243.14Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185843 ID=CN185843; Name=CN185843; organism=Citrus sinensis; type=EST; length=775bp
GAGAGAGAACATTTATATATTAGCTACATCGATGACGAACAATATACAGT
ATAGAGGACAGCAAGATAGATACCGCTATTCACCAATATTCCTAATTTGT
ACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAATGGAAACTTTAG
TAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGACAATAAACCTTC
ATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATTCCACAAAGAAC
ATTGATAAACATCAGAAATTCACCAACACTAATTCCCTTCTAAGTGGAGC
AGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCTGCACTGTTGGC
GGCCTAGCATTGTTCGAGGCAGGTTGGCTTGCCATCCTATTCTTGATTGA
AGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGCACTTTTAGCAC
TTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATGCCTTGGCTGTC
TCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTGTTACCAACTAA
AAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTCATTCAGCCATT
GCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCATAAACAACAATG
ATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTCCTAAAACGCTC
TTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTTGCCATCTTGGT
CCACAGTGCGGATTTTAAAGTCAAC
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