CN185843

Overview
NameCN185843
Unique NameCN185843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RABC_DICDI (Ras-related protein RabC OS=Dictyostelium discoideum GN=rabC PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.525e-32
Identity = 67/162 (41.36%), Postives = 102/162 (62.96%), Query Frame = -1
Query:  299 VDFKIRTV--DQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIR-GQPVNQKSGCC 775
            VDF ++T+   + G+T+KLQ+WDTAGQERF++IT ++YRG+HG+IVVYDVTD +SF   K W+ +I++Y  + +  +LVGNK D+ A + V++E  +  A+++   F+E SAK    V Q F  +   I+  M +   + N      Q+     V QK GCC
Sbjct:   41 VDFNVKTIRNKETGQTVKLQLWDTAGQERFKSITQTFYRGSHGVIVVYDVTDPKSFERCKNWVEDINQYTQDGMIIILVGNKSDMVAQRKVTFEQGQEMAEQLKTKFLEVSAKENNGVTQVFDLLVQDIEATMKNSKVAQN------QLNLNSEVGQKRGCC 196          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB18_DICDI (Ras-related protein Rab-18 OS=Dictyostelium discoideum GN=rab18 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.525e-32
Identity = 77/165 (46.67%), Postives = 107/165 (64.85%), Query Frame = -1
Query:  296 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI----KNRMASQPASNNARPPTVQIRGQPVNQKSGCCS 775
            V+FK++ V  DGK + L IWDTAGQE+FR + SSYYRGAHGII+ YDVT +ESF+N+  WLNE++ +A+  N+ KLLVGNK D   N+ V+ E    FA +  + F+E SAKS   ++QAF  +A  I    +N  +SQP   N    +V++  +P +   G CS
Sbjct:   41 VEFKMKEVKVDGKKVDLCIWDTAGQEKFRALISSYYRGAHGIILTYDVTKRESFDNLNYWLNEVENFANRSNLVKLLVGNKID-KENREVTREEGAEFAKKKAMLFIECSAKSKIGIQQAFEELAQKIIEIPQNTSSSQPKQRNT--GSVKVEDEP-DHNQGVCS 201          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 3.525e-32
Identity = 71/168 (42.26%), Postives = 99/168 (58.93%), Query Frame = -1
Query:  302 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ----------IRGQPVNQKSGC 775
            V+F  R ++  G+ IKLQIWDTAGQERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N   +L+GNK DL A + V+YE AK FA+E G+ F+E SAK+  NVE AF+  A  I   +       NA    VQ          +  +P  Q+ GC
Sbjct:   46 VEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSAPQGGRLTSEPQPQREGC 213          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 3.525e-32
Identity = 71/168 (42.26%), Postives = 99/168 (58.93%), Query Frame = -1
Query:  302 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ----------IRGQPVNQKSGC 775
            V+F  R ++  G+ IKLQIWDTAGQERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N   +L+GNK DL A + V+YE AK FA+E G+ F+E SAK+  NVE AF+  A  I   +       NA    VQ          +  +P  Q+ GC
Sbjct:   46 VEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSAPQGGRLTSEPQPQREGC 213          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 3.525e-32
Identity = 71/168 (42.26%), Postives = 99/168 (58.93%), Query Frame = -1
Query:  302 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ----------IRGQPVNQKSGC 775
            V+F  R ++  G+ IKLQIWDTAGQERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N   +L+GNK DL A + V+YE AK FA+E G+ F+E SAK+  NVE AF+  A  I   +       NA    VQ          +  +P  Q+ GC
Sbjct:   46 VEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSAPQGGRLTSEPQPQREGC 213          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 3.525e-32
Identity = 71/168 (42.26%), Postives = 99/168 (58.93%), Query Frame = -1
Query:  302 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ----------IRGQPVNQKSGC 775
            V+F  R ++  G+ IKLQIWDTAGQERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N   +L+GNK DL A + V+YE AK FA+E G+ F+E SAK+  NVE AF+  A  I   +       NA    VQ          +  +P  Q+ GC
Sbjct:   46 VEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSAPQGGRLTSEPQPQREGC 213          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 138.658 bits (348), Expect = 3.525e-32
Identity = 71/168 (42.26%), Postives = 99/168 (58.93%), Query Frame = -1
Query:  302 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ----------IRGQPVNQKSGC 775
            V+F  R ++  G+ IKLQIWDTAGQERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N   +L+GNK DL A + V+YE AK FA+E G+ F+E SAK+  NVE AF+  A  I   +       NA    VQ          +  +P  Q+ GC
Sbjct:   46 VEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSAPQGGRLTSEPQPQREGC 213          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 3.525e-32
Identity = 71/168 (42.26%), Postives = 99/168 (58.93%), Query Frame = -1
Query:  302 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ----------IRGQPVNQKSGC 775
            V+F  R ++  G+ IKLQIWDTAGQERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N   +L+GNK DL A + V+YE AK FA+E G+ F+E SAK+  NVE AF+  A  I   +       NA    VQ          +  +P  Q+ GC
Sbjct:   46 VEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSAPQGGRLTSEPQPQREGC 213          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB12_CANFA (Ras-related protein Rab-12 (Fragment) OS=Canis familiaris GN=RAB12 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.525e-32
Identity = 69/152 (45.39%), Postives = 101/152 (66.45%), Query Frame = -1
Query:  323 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQP 775
            VDFKI+TV+  GK I+LQIWDTAGQERF +ITS+YYR A GII+VYD+T +E+F+++ +W+  ID+YASE+   LLVGNK D   ++ ++ +  + FA EI G+ F E SAK   NV++ F+ +   I  +M      N      + ++ +P
Sbjct:   41 VDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAHEITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSNSILSLQPEP 192          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RB43L_HUMAN (Putative Rab-43-like protein ENSP00000330714 OS=Homo sapiens PE=5 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 4.604e-32
Identity = 69/159 (43.40%), Postives = 104/159 (65.41%), Query Frame = -1
Query:  302 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGC 775
            VDF ++T++  GK +KLQIWDTAGQERFRTIT SYYR A+G I+ YD+T + SF +V  W+ ++ +YA  N+ +LL+GNK DL+  + VS   A++ A+   I   +ETSAK ++NVE+AF+ +A  +  R    P  +   P  +Q+  + + +  GC
Sbjct:   22 VDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG-PLFSEKSPDHIQLNSKDIGEGWGC 179          
The following BLAST results are available for this feature:
BLAST of CN185843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RABC_DICDI3.525e-3241.36Ras-related protein RabC OS=Dictyostelium discoide... [more]
RAB18_DICDI3.525e-3246.67Ras-related protein Rab-18 OS=Dictyostelium discoi... [more]
RAB14_RAT3.525e-3242.26Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB3.525e-3242.26Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_PIG3.525e-3242.26Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]
RAB14_MOUSE3.525e-3242.26Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN3.525e-3242.26Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK3.525e-3242.26Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RAB12_CANFA3.525e-3245.39Ras-related protein Rab-12 (Fragment) OS=Canis fam... [more]
RB43L_HUMAN4.604e-3243.40Putative Rab-43-like protein ENSP00000330714 OS=Ho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185843 ID=CN185843; Name=CN185843; organism=Citrus sinensis; type=EST; length=775bp
GAGAGAGAACATTTATATATTAGCTACATCGATGACGAACAATATACAGT
ATAGAGGACAGCAAGATAGATACCGCTATTCACCAATATTCCTAATTTGT
ACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAATGGAAACTTTAG
TAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGACAATAAACCTTC
ATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATTCCACAAAGAAC
ATTGATAAACATCAGAAATTCACCAACACTAATTCCCTTCTAAGTGGAGC
AGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCTGCACTGTTGGC
GGCCTAGCATTGTTCGAGGCAGGTTGGCTTGCCATCCTATTCTTGATTGA
AGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGCACTTTTAGCAC
TTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATGCCTTGGCTGTC
TCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTGTTACCAACTAA
AAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTCATTCAGCCATT
GCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCATAAACAACAATG
ATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTCCTAAAACGCTC
TTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTTGCCATCTTGGT
CCACAGTGCGGATTTTAAAGTCAAC
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