CN185843
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 8.683e-31 Identity = 72/180 (40.00%), Postives = 104/180 (57.78%), Query Frame = -1 Query: 299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ---------------------PASNNARPPTVQIRGQPVNQKSGCC 775 VDF ++++ D KTI Q WDTAGQERFR +TS YYRGA G ++VYD+T + SF NV +WLNE+ A +++ ++VGNK DL ++ V + A+AFA+ I F+ETSA ++TNV Q+F + I + ++S+ P S+ A T +KSGCC Sbjct: 45 VDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSKKPMVVDDTQNWLVPNQGKKLTPLSDPAPQLTANTTSTHQEKKSGCC 224
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.134e-30 Identity = 64/135 (47.41%), Postives = 95/135 (70.37%), Query Frame = -1 Query: 371 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP 775 V+F R+++ + K IKLQIWDTAGQE+FR+IT +YYRGA ++VYD+T ++SF ++ WL + +++S +V +L+GNK DL AN+ VS AK FA++ G+ F ETSAK+A NV++AF I ++ S P Sbjct: 59 VEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLESNP 193
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB12_RAT (Ras-related protein Rab-12 (Fragment) OS=Rattus norvegicus GN=Rab12 PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.134e-30 Identity = 65/132 (49.24%), Postives = 93/132 (70.45%), Query Frame = -1 Query: 383 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAASIKNRM 775 VDFKI+TV+ GK I+LQIWDTAGQERF +ITS+YYR A GII+VYD+T +E+F+++ +W+ ID+YASE+ LL GNK D ++ +S + + FA +I G+ E SAK NV++ F+ + I +M Sbjct: 30 VDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLAGNKLDCETDREISRQQGEKFAQQITGMRLSEPSAKDNFNVDEIFLKLVDDILKKM 161
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB5C_PONAB (Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.481e-30 Identity = 65/158 (41.14%), Postives = 93/158 (58.86%), Query Frame = -1 Query: 296 FKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCS 769 F +TV D T+K +IWDTAGQER+ ++ YYRGA IVVYD+T+ ++F K W+ E+ R AS N+ L GNK DL + + V ++ A+A+AD+ + FMETSAK+A NV + FMA+A + R V ++ +S CCS Sbjct: 58 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCS 215
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB5C_HUMAN (Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2) HSP 1 Score: 133.265 bits (334), Expect = 1.481e-30 Identity = 65/158 (41.14%), Postives = 93/158 (58.86%), Query Frame = -1 Query: 296 FKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCS 769 F +TV D T+K +IWDTAGQER+ ++ YYRGA IVVYD+T+ ++F K W+ E+ R AS N+ L GNK DL + + V ++ A+A+AD+ + FMETSAK+A NV + FMA+A + R V ++ +S CCS Sbjct: 58 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCS 215
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.481e-30 Identity = 65/158 (41.14%), Postives = 94/158 (59.49%), Query Frame = -1 Query: 296 FKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCS 769 F +TV D T+K +IWDTAGQER+ ++ YYRGA IVVYD+T+ ++F K W+ E+ R AS N+ L GNK DL + + V ++ A+A+A++ + FMETSAK+A NV + FMA+A + A R V ++ +S CCS Sbjct: 58 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRNRGVDLQENNPASRSQCCS 215
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.934e-30 Identity = 74/171 (43.27%), Postives = 103/171 (60.23%), Query Frame = -1 Query: 293 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI------KNRMASQPASNNARPP---TVQIRGQPVN-QKSGCCST 775 V+F ++++ D K IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT ++ NV +WL E+ + N+ +L+GNK DL VS + AK A+ G+ FMETSA ATNVE AF I K A + ++ PP T+ I+ + + +K GCCS+ Sbjct: 48 VEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGETINIKDEGSSWKKFGCCSS 218
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4) HSP 1 Score: 132.88 bits (333), Expect = 1.934e-30 Identity = 73/173 (42.20%), Postives = 104/173 (60.12%), Query Frame = -1 Query: 299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR--------------PPTVQIRGQPVNQKSGCC 775 V+F R++ DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ +LVGNK DL + V + A+AFA++ + F+ETSA +TNVE+AF + I ++ + ++ A PPT GQ N K CC Sbjct: 46 VEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTD--GQKPN-KLQCC 215
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3) HSP 1 Score: 132.88 bits (333), Expect = 1.934e-30 Identity = 73/175 (41.71%), Postives = 105/175 (60.00%), Query Frame = -1 Query: 293 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR--------------PPTVQIRGQPVNQKSGCCST 775 V+F R++ DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ +LVGNK DL + V + A+AFA++ + F+ETSA +TNVE+AF + I ++ + ++ A PPT GQ N K CC + Sbjct: 46 VEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTD--GQRPN-KLQCCQS 217
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4) HSP 1 Score: 132.88 bits (333), Expect = 1.934e-30 Identity = 73/173 (42.20%), Postives = 104/173 (60.12%), Query Frame = -1 Query: 299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR--------------PPTVQIRGQPVNQKSGCC 775 V+F R++ DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ +LVGNK DL + V + A+AFA++ + F+ETSA +TNVE+AF + I ++ + ++ A PPT GQ N K CC Sbjct: 46 VEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTD--GQKPN-KLQCC 215 The following BLAST results are available for this feature:
BLAST of CN185843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN185843 ID=CN185843; Name=CN185843; organism=Citrus sinensis; type=EST; length=775bpback to top |