CN185843

Overview
NameCN185843
Unique NameCN185843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.683e-31
Identity = 72/180 (40.00%), Postives = 104/180 (57.78%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQ---------------------PASNNARPPTVQIRGQPVNQKSGCC 775
            VDF  ++++ D KTI  Q WDTAGQERFR +TS YYRGA G ++VYD+T + SF NV +WLNE+   A +++  ++VGNK DL  ++ V  + A+AFA+   I F+ETSA ++TNV Q+F  +   I + ++S+                     P S+ A   T         +KSGCC
Sbjct:   45 VDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSKKPMVVDDTQNWLVPNQGKKLTPLSDPAPQLTANTTSTHQEKKSGCC 224          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.134e-30
Identity = 64/135 (47.41%), Postives = 95/135 (70.37%), Query Frame = -1
Query:  371 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQP 775
            V+F  R+++ + K IKLQIWDTAGQE+FR+IT +YYRGA   ++VYD+T ++SF ++  WL +  +++S +V  +L+GNK DL AN+ VS   AK FA++ G+ F ETSAK+A NV++AF      I  ++ S P
Sbjct:   59 VEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLESNP 193          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB12_RAT (Ras-related protein Rab-12 (Fragment) OS=Rattus norvegicus GN=Rab12 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.134e-30
Identity = 65/132 (49.24%), Postives = 93/132 (70.45%), Query Frame = -1
Query:  383 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKSATNVEQAFMAMAASIKNRM 775
            VDFKI+TV+  GK I+LQIWDTAGQERF +ITS+YYR A GII+VYD+T +E+F+++ +W+  ID+YASE+   LL GNK D   ++ +S +  + FA +I G+   E SAK   NV++ F+ +   I  +M
Sbjct:   30 VDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLAGNKLDCETDREISRQQGEKFAQQITGMRLSEPSAKDNFNVDEIFLKLVDDILKKM 161          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB5C_PONAB (Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.481e-30
Identity = 65/158 (41.14%), Postives = 93/158 (58.86%), Query Frame = -1
Query:  296 FKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCS 769
            F  +TV  D  T+K +IWDTAGQER+ ++   YYRGA   IVVYD+T+ ++F   K W+ E+ R AS N+   L GNK DL + + V ++ A+A+AD+  + FMETSAK+A NV + FMA+A  +             R   V ++      +S CCS
Sbjct:   58 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCS 215          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB5C_HUMAN (Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.481e-30
Identity = 65/158 (41.14%), Postives = 93/158 (58.86%), Query Frame = -1
Query:  296 FKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCS 769
            F  +TV  D  T+K +IWDTAGQER+ ++   YYRGA   IVVYD+T+ ++F   K W+ E+ R AS N+   L GNK DL + + V ++ A+A+AD+  + FMETSAK+A NV + FMA+A  +             R   V ++      +S CCS
Sbjct:   58 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCS 215          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.481e-30
Identity = 65/158 (41.14%), Postives = 94/158 (59.49%), Query Frame = -1
Query:  296 FKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCS 769
            F  +TV  D  T+K +IWDTAGQER+ ++   YYRGA   IVVYD+T+ ++F   K W+ E+ R AS N+   L GNK DL + + V ++ A+A+A++  + FMETSAK+A NV + FMA+A  +        A    R   V ++      +S CCS
Sbjct:   58 FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPGRNRGVDLQENNPASRSQCCS 215          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.934e-30
Identity = 74/171 (43.27%), Postives = 103/171 (60.23%), Query Frame = -1
Query:  293 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI------KNRMASQPASNNARPP---TVQIRGQPVN-QKSGCCST 775
            V+F  ++++ D K IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL E+  +   N+  +L+GNK DL     VS + AK  A+  G+ FMETSA  ATNVE AF      I      K   A    + ++ PP   T+ I+ +  + +K GCCS+
Sbjct:   48 VEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGETINIKDEGSSWKKFGCCSS 218          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 132.88 bits (333), Expect = 1.934e-30
Identity = 73/173 (42.20%), Postives = 104/173 (60.12%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR--------------PPTVQIRGQPVNQKSGCC 775
            V+F  R++  DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++  + F+ETSA  +TNVE+AF  +   I   ++ +  ++ A               PPT    GQ  N K  CC
Sbjct:   46 VEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTD--GQKPN-KLQCC 215          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.934e-30
Identity = 73/175 (41.71%), Postives = 105/175 (60.00%), Query Frame = -1
Query:  293 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR--------------PPTVQIRGQPVNQKSGCCST 775
            V+F  R++  DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++  + F+ETSA  +TNVE+AF  +   I   ++ +  ++ A               PPT    GQ  N K  CC +
Sbjct:   46 VEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTD--GQRPN-KLQCCQS 217          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 132.88 bits (333), Expect = 1.934e-30
Identity = 73/173 (42.20%), Postives = 104/173 (60.12%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR--------------PPTVQIRGQPVNQKSGCC 775
            V+F  R++  DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++  + F+ETSA  +TNVE+AF  +   I   ++ +  ++ A               PPT    GQ  N K  CC
Sbjct:   46 VEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTD--GQKPN-KLQCC 215          
The following BLAST results are available for this feature:
BLAST of CN185843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11C_DICDI8.683e-3140.00Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB2B_DICDI1.134e-3047.41Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAB12_RAT1.134e-3049.24Ras-related protein Rab-12 (Fragment) OS=Rattus no... [more]
RAB5C_PONAB1.481e-3041.14Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5... [more]
RAB5C_HUMAN1.481e-3041.14Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5... [more]
RAB5C_BOVIN1.481e-3041.14Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
YPT3_NICPL1.934e-3043.27Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RB11B_RAT1.934e-3042.20Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE1.934e-3041.71Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN1.934e-3042.20Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185843 ID=CN185843; Name=CN185843; organism=Citrus sinensis; type=EST; length=775bp
GAGAGAGAACATTTATATATTAGCTACATCGATGACGAACAATATACAGT
ATAGAGGACAGCAAGATAGATACCGCTATTCACCAATATTCCTAATTTGT
ACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAATGGAAACTTTAG
TAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGACAATAAACCTTC
ATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATTCCACAAAGAAC
ATTGATAAACATCAGAAATTCACCAACACTAATTCCCTTCTAAGTGGAGC
AGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCTGCACTGTTGGC
GGCCTAGCATTGTTCGAGGCAGGTTGGCTTGCCATCCTATTCTTGATTGA
AGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGCACTTTTAGCAC
TTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATGCCTTGGCTGTC
TCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTGTTACCAACTAA
AAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTCATTCAGCCATT
GCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCATAAACAACAATG
ATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTCCTAAAACGCTC
TTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTTGCCATCTTGGT
CCACAGTGCGGATTTTAAAGTCAAC
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