CN185843

Overview
NameCN185843
Unique NameCN185843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3681 contig Csv1_Contig3681:23..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.643e-47
Identity = 88/159 (55.35%), Postives = 119/159 (74.84%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 775
            +DFKIRT++ +GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD++SF +++ W+  I+++AS++VNK+L+GNKCD+T  KVV     K+ ADE GI F+ETSAK++ NVE+AF+ +A  IK RM   P       P   I   P N+K+ CC
Sbjct:   50 IDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDTP-----NDPDHTICITPNNKKNTCC 203          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.743e-45
Identity = 91/166 (54.82%), Postives = 119/166 (71.69%), Query Frame = -1
Query:  293 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK-VVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPP-TVQIRGQPVNQ---KSGCCST 775
            +DFKIRT++ DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK D+  +K  V     +A ADE GI F ETSAK+  NVE+ F ++A  IK R+A       A+P  T++   Q  NQ   KS CC +
Sbjct:   50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEAQPSITIKPADQSGNQAAAKSACCGS 215          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.380e-44
Identity = 80/128 (62.50%), Postives = 108/128 (84.38%), Query Frame = -1
Query:  392 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 775
            VDF IRT++ DGK IKLQIWDTAGQERF+TIT+SYYRGAHG+I+VYD+T  +SFN++K+WL ++DR+AS +V KL+VGNKCDL + + V ++ AK FADE+ IP METSAK +T +++AF+ +A+ IK
Sbjct:   68 VDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIK 195          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.074e-44
Identity = 91/170 (53.53%), Postives = 119/170 (70.00%), Query Frame = -1
Query:  293 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK-VVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQI--------RGQPVNQKSGCCST 775
            +DFKIRT++ DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK D+  +K  V     +A ADE GI F ETSAK+  NVE+ F ++   IK R++     + A P T++I         GQ   QKS CC T
Sbjct:   50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSD--TDSRAEPATIKISQTDQAAGAGQ-ATQKSACCGT 216          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.848e-44
Identity = 92/167 (55.09%), Postives = 116/167 (69.46%), Query Frame = -1
Query:  278 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK-VVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCST*KGIS 775
            +DFKI+ VD DGK +KLQIWDTAGQERFRTITS+YYRGA GII+VYD+TD+ SFNNV+ W+  I+++AS+NVNK+LVGNK DL  +K VVS    +A ADE G  F ETSAK   +VE+AF+A+A  +  RM  + A+            QPV   SG  S  +G S
Sbjct:   48 IDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARMEGEHANQQLLQQQQLSAAQPVRLTSGSPSPAQGKS 214          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.877e-42
Identity = 80/142 (56.34%), Postives = 110/142 (77.46%), Query Frame = -1
Query:  356 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRM--ASQPASNNA 775
            +DFKIRT++ DGK IKLQIWDTAGQERFRTIT++YYRGA GI+++YDVTD++SF+NV+ W + ++++ASENV K+L+GNKCD    + VS+E  +A ADE+G+ F+E SAK+  NV++AF  +A  IK +   A    SN A
Sbjct:   44 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQA 185          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.865e-41
Identity = 80/159 (50.31%), Postives = 111/159 (69.81%), Query Frame = -1
Query:  299 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCC 775
            +DFKIRT+D   + +KLQ+WDTAGQERFRTIT++YYRGA GI++VYDVTD++SFNN++ W   +  YA+E V  +LVGNKCDL   +VVS E  +A AD+ GIPF+E S+K+  NVE+ F ++A  I++ +A +   N +    + I     N  S CC
Sbjct:   46 IDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVA-KTKGNESGSGGINIAEGEENSASKCC 203          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RABG2_DICDI (Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.426e-41
Identity = 81/138 (58.70%), Postives = 103/138 (74.64%), Query Frame = -1
Query:  365 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPAS 775
            VD+K + +  DG+T  LQIWDTAGQERFRTITSS+YRGAHG++V YDVTDQ ++NNV+ W+ EI RYA   V+++LVGNKCDL   K+V+   A+ +AD +GIPFME SA +  NVE+AFMAMA  I +N M     S
Sbjct:   41 VDYKNKNIVIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVRLWMQEIQRYAVLGVSRVLVGNKCDLEDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEIYRNHMGGSKPS 178          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.256e-41
Identity = 78/148 (52.70%), Postives = 107/148 (72.30%), Query Frame = -1
Query:  332 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIR 775
            +DF+IRTVD +GK IKLQ+WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+ A + V  E A   A E GI F ETSAKS+ NV++AF ++A  I  +   +   NN +PP+  ++
Sbjct:   43 IDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLKNNNKPPSTDLK 190          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.209e-40
Identity = 78/148 (52.70%), Postives = 107/148 (72.30%), Query Frame = -1
Query:  332 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIR 775
            +DFKIRTVD +GK IKLQ+WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+ A + V  E A   A E GI F ETSAKS+ NV++AF ++A  I  +   + + N  +PP+  ++
Sbjct:   43 IDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNKPPSTDLK 190          
The following BLAST results are available for this feature:
BLAST of CN185843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8B_DICDI8.643e-4755.35Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RB1BV_BETVU4.743e-4554.82Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB1C_DICDI1.380e-4462.50Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
ARA3_ARATH3.074e-4453.53Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
YPTV2_VOLCA6.848e-4455.09GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
YPT2_SCHPO2.877e-4256.34GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RYL1_YARLI1.865e-4150.31Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RABG2_DICDI5.426e-4158.70Ras-related protein RabG2 OS=Dictyostelium discoid... [more]
RAB13_BOVIN9.256e-4152.70Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RAB13_HUMAN1.209e-4052.70Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001P07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185843 ID=CN185843; Name=CN185843; organism=Citrus sinensis; type=EST; length=775bp
GAGAGAGAACATTTATATATTAGCTACATCGATGACGAACAATATACAGT
ATAGAGGACAGCAAGATAGATACCGCTATTCACCAATATTCCTAATTTGT
ACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAATGGAAACTTTAG
TAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGACAATAAACCTTC
ATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATTCCACAAAGAAC
ATTGATAAACATCAGAAATTCACCAACACTAATTCCCTTCTAAGTGGAGC
AGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCTGCACTGTTGGC
GGCCTAGCATTGTTCGAGGCAGGTTGGCTTGCCATCCTATTCTTGATTGA
AGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGCACTTTTAGCAC
TTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATGCCTTGGCTGTC
TCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTGTTACCAACTAA
AAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTCATTCAGCCATT
GCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCATAAACAACAATG
ATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTCCTAAAACGCTC
TTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTTGCCATCTTGGT
CCACAGTGCGGATTTTAAAGTCAAC
back to top