CN185843

Overview
NameCN185843
Unique NameCN185843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAP2B_HUMAN (Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2B PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.784e-18
Identity = 56/160 (35.00%), Postives = 82/160 (51.25%), Query Frame = -1
Query:  296 DFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCS 772
            DF  + ++ D     L+I DTAG E+F ++   Y +   G I+VY + +Q+SF ++K   ++I R    E V  +LVGNK DL   + VSY   KA A+E   PFMETSAK+  +V++ F  +   +    A+QP                 N   GCCS
Sbjct:   38 DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGEREVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQM--NYAAQP-----------------NGDEGCCS 178          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAP2A_PIG (Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.784e-18
Identity = 56/160 (35.00%), Postives = 82/160 (51.25%), Query Frame = -1
Query:  296 DFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPVNQKSGCCS 772
            DF  + ++ D     L+I DTAG E+F ++   Y +   G I+VY + +Q+SF ++K   ++I R    E V  +LVGNK DL   + VSY   KA A+E   PFMETSAK+  +V++ F  +   +    A+QP                 N   GCCS
Sbjct:   38 DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGEREVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQM--NYAAQP-----------------NGDEGCCS 178          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RALA_DROME (Ras-related protein Ral-a OS=Drosophila melanogaster GN=Rala PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.784e-18
Identity = 45/132 (34.09%), Postives = 76/132 (57.58%), Query Frame = -1
Query:  353 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR 745
            DG+ +++ I DTAGQE +  I  +Y+R   G + V+ +TD ESF   +++  +I R  + E++  LLVGNKCDL   + V     +  A +  +P++ETSAK+  NV++ F  +   I++R      + + R
Sbjct:   55 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITDDESFQATQEFREQILRVKNDESIPFLLVGNKCDLNDKRKVPLSECQLRAQQWAVPYVETSAKTRENVDKVFFDLMREIRSRKTEDSKATSGR 186          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB9B_MOUSE (Ras-related protein Rab-9B OS=Mus musculus GN=Rab9b PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.784e-18
Identity = 51/125 (40.80%), Postives = 79/125 (63.20%), Query Frame = -1
Query:  416 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAF 775
            V+F  R ++ DG+ + LQIWDTAGQERF+++ + +YRGA   ++ + V D++SF N+  W  E   YA     ++   +++GNK D   ++ V+ E A+A+  E G  P++ETSAK  TNV  AF
Sbjct:   42 VEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPDHFPFVVLGNKVD-KEDRQVTTEEAQAWCMENGNYPYLETSAKDDTNVTVAF 165          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RALB_RAT (Ras-related protein Ral-B OS=Rattus norvegicus GN=Ralb PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.942e-18
Identity = 46/133 (34.59%), Postives = 77/133 (57.89%), Query Frame = -1
Query:  353 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN--VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR 745
            DG+ +++ I DTAGQE +  I  +Y+R   G ++V+ +T+ ESF    ++  +I R  +E   +  L+VGNK DL   + V  E A+  A+E G+ ++ETSAK+  NV++ F  +   I+ +  S+    N R
Sbjct:   58 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARGKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKMSENKDKNGR 190          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RALB_PONAB (Ras-related protein Ral-B OS=Pongo abelii GN=RALB PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.942e-18
Identity = 45/133 (33.83%), Postives = 78/133 (58.65%), Query Frame = -1
Query:  353 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN--VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR 745
            DG+ +++ I DTAGQE +  I  +Y+R   G ++V+ +T+ ESF    ++  +I R  +E   +  L+VGNK DL   + V  E A++ A+E G+ ++ETSAK+  NV++ F  +   I+ +  S+    N +
Sbjct:   58 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSENKDKNGK 190          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RALB_MOUSE (Ras-related protein Ral-B OS=Mus musculus GN=Ralb PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.942e-18
Identity = 46/133 (34.59%), Postives = 77/133 (57.89%), Query Frame = -1
Query:  353 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASE--NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR 745
            DG+ +++ I DTAGQE +  I  +Y+R   G ++V+ +T+ ESF    ++  +I R  SE   +  L+VGNK DL   + V  + A+  A+E G+ ++ETSAK+  NV++ F  +   I+ +  S+    N R
Sbjct:   58 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKSEEDKIPLLVVGNKSDLEERRQVPVDEARGKAEEWGVQYVETSAKTRANVDKVFFDLMREIRAKKMSENKDKNGR 190          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RALB_MACFA (Ras-related protein Ral-B OS=Macaca fascicularis GN=RALB PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.942e-18
Identity = 45/133 (33.83%), Postives = 78/133 (58.65%), Query Frame = -1
Query:  353 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN--VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR 745
            DG+ +++ I DTAGQE +  I  +Y+R   G ++V+ +T+ ESF    ++  +I R  +E   +  L+VGNK DL   + V  E A++ A+E G+ ++ETSAK+  NV++ F  +   I+ +  S+    N +
Sbjct:   58 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSENKDKNGK 190          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RALB_HUMAN (Ras-related protein Ral-B OS=Homo sapiens GN=RALB PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.942e-18
Identity = 45/133 (33.83%), Postives = 78/133 (58.65%), Query Frame = -1
Query:  353 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN--VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR 745
            DG+ +++ I DTAGQE +  I  +Y+R   G ++V+ +T+ ESF    ++  +I R  +E   +  L+VGNK DL   + V  E A++ A+E G+ ++ETSAK+  NV++ F  +   I+ +  S+    N +
Sbjct:   58 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSENKDKNGK 190          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB9B_HUMAN (Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9B PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.942e-18
Identity = 48/124 (38.71%), Postives = 73/124 (58.87%), Query Frame = -1
Query:  416 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAF 775
            V+F  R ++ DG+ + LQIWDTAGQERF+++ + +YRGA   ++ + V D++SF N+  W  E   YA     E+   +++GNK D    +V + E      +    P++ETSAK  TNV  AF
Sbjct:   42 VEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165          
The following BLAST results are available for this feature:
BLAST of CN185843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP2B_HUMAN3.784e-1835.00Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2... [more]
RAP2A_PIG3.784e-1835.00Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A ... [more]
RALA_DROME3.784e-1834.09Ras-related protein Ral-a OS=Drosophila melanogast... [more]
RAB9B_MOUSE3.784e-1840.80Ras-related protein Rab-9B OS=Mus musculus GN=Rab9... [more]
RALB_RAT4.942e-1834.59Ras-related protein Ral-B OS=Rattus norvegicus GN=... [more]
RALB_PONAB4.942e-1833.83Ras-related protein Ral-B OS=Pongo abelii GN=RALB ... [more]
RALB_MOUSE4.942e-1834.59Ras-related protein Ral-B OS=Mus musculus GN=Ralb ... [more]
RALB_MACFA4.942e-1833.83Ras-related protein Ral-B OS=Macaca fascicularis G... [more]
RALB_HUMAN4.942e-1833.83Ras-related protein Ral-B OS=Homo sapiens GN=RALB ... [more]
RAB9B_HUMAN4.942e-1838.71Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185843 ID=CN185843; Name=CN185843; organism=Citrus sinensis; type=EST; length=775bp
GAGAGAGAACATTTATATATTAGCTACATCGATGACGAACAATATACAGT
ATAGAGGACAGCAAGATAGATACCGCTATTCACCAATATTCCTAATTTGT
ACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAATGGAAACTTTAG
TAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGACAATAAACCTTC
ATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATTCCACAAAGAAC
ATTGATAAACATCAGAAATTCACCAACACTAATTCCCTTCTAAGTGGAGC
AGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCTGCACTGTTGGC
GGCCTAGCATTGTTCGAGGCAGGTTGGCTTGCCATCCTATTCTTGATTGA
AGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGCACTTTTAGCAC
TTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATGCCTTGGCTGTC
TCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTGTTACCAACTAA
AAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTCATTCAGCCATT
GCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCATAAACAACAATG
ATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTCCTAAAACGCTC
TTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTTGCCATCTTGGT
CCACAGTGCGGATTTTAAAGTCAAC
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