CN185843

Overview
NameCN185843
Unique NameCN185843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB36_MOUSE (Ras-related protein Rab-36 OS=Mus musculus GN=Rab36 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.590e-16
Identity = 50/128 (39.06%), Postives = 73/128 (57.03%), Query Frame = -1
Query:  401 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDLTANKVVSYETAKA--FADEIGIPFMETSAKSATNVEQAFMAMAA 775
            VDF+I   +  G    LQIWDTAGQE+F+ I S+YYRGA  II  +D+TD ++  + +QWL ++ R   + +    LVG K DL +        A+A   A+E+   +   SAK+  NV+  F  +AA
Sbjct:   92 VDFEIERFEIAGIPYSLQIWDTAGQEKFKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDVLRENEAGSCFIFLVGTKKDLLSGAACEQAEAEAVHLANEMQAEYWSVSAKTGENVKAFFSRVAA 219          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAS_ARTSA (Ras-like protein (Fragment) OS=Artemia salina PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.076e-16
Identity = 50/140 (35.71%), Postives = 76/140 (54.29%), Query Frame = -1
Query:  332 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPASNNARPPTVQIR 745
            DG+T  L I DTAGQE +  +   Y R   G ++V+ V + +SF ++  +  +I R   +E V  +LVGNKCDL   + V    A+  A + GIPF+ETSAK+   V+  F  +   I K++M    +S   R    Q++
Sbjct:   36 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNNAKSFEDISAYREQIKRVKDAEEVPMVLVGNKCDL-PTRAVDMSQAREVARQYGIPFVETSAKTRMGVDDGFYTLVREIKKDKMKKGNSSRRGRSGRKQLK 174          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RASH_CHICK (GTPase HRas OS=Gallus gallus GN=HRAS1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.076e-16
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = -1
Query:  392 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 745
            DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A + V    A+  A   GIP++ETSAK+   VE AF  +   I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLPA-RTVETRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RASD_DICDI (Ras-like protein rasD OS=Dictyostelium discoideum GN=rasD PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.076e-16
Identity = 47/137 (34.31%), Postives = 72/137 (52.55%), Query Frame = -1
Query:  353 RTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNAR 760
            + V  D +T  L I DTAGQE +  +   Y R   G + VY +T + S++ +  +  +I R   ++ V  +LVGNK DL   + VS    +  A     PFME+SAKS  NVE+AF ++   I+  +    +S  A+
Sbjct:   42 KQVSIDDETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSYDEIASFREQILRVKDKDRVPLILVGNKADLDHERQVSVNEGQELAKGFNCPFMESSAKSRINVEEAFYSLVREIRKELKGDQSSGKAQ 178          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAS1_PHYPO (Ras-like protein 1 OS=Physarum polycephalum GN=RAS1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.076e-16
Identity = 46/124 (37.10%), Postives = 68/124 (54.84%), Query Frame = -1
Query:  392 RTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 760
            + V  D +T  L I DTAGQE +  +   Y R   G + VY +T + SF+ +  +  +I R   ++ V  ++VGNKCDL   + V+    +  A   G PFMETSAKS  NVE++F  +   I+
Sbjct:   42 KQVTIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDKVPMIVVGNKCDLEGERQVTTGEGQDLARSFGCPFMETSAKSRVNVEESFYQLVREIR 165          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB34_MOUSE (Ras-related protein Rab-34 OS=Mus musculus GN=Rab34 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.076e-16
Identity = 50/128 (39.06%), Postives = 72/128 (56.25%), Query Frame = -1
Query:  401 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCDLT--ANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAA 775
            VDF++   +  G    LQ+WDTAGQERF+ I S+YYRGA  II+V+++ D  S  + KQWL + +      NV   LVG+K DL+  A   +  + A   A EI   +   S+ +  NV + F  +AA
Sbjct:   87 VDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLTDALKENDPSNVLLFLVGSKKDLSTPAQYSLMEKDALKVAQEIKAEYWAVSSLTGENVREFFFRVAA 214          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RASL_COLTR (Ras-like protein OS=Colletotrichum trifolii GN=RAS PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.712e-16
Identity = 49/158 (31.01%), Postives = 77/158 (48.73%), Query Frame = -1
Query:  296 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLV-GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQIRGQPV-------NQKSGCCS 745
            D +   L + DTAGQE +  +   Y R   G ++VY +T ++SF  +  +  +I R   ++   ++V GNKCDL   + V+ +  +A A   G  F+ETSAKS  NV++AF  +   I+         +        I G P         Q++GCCS
Sbjct:   52 DEEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEITTFQQQILRVKDKDYFPMVVVGNKCDLEGEREVTRQEGEALAKSFGCKFIETSAKSRINVDKAFYDIVREIRRYNREMQGYSTGSGGASGINGPPKPMDVENGEQEAGCCS 209          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RASH_MSVMO (GTPase HRas OS=Moloney murine sarcoma virus GN=H-RAS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.712e-16
Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = -1
Query:  392 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 745
            DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A  V S + A+  A   GIP+++TSAK+   VE AF  +   I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQ-AQDLARSYGIPYIKTSAKTRQGVEDAFYTLVREIR 164          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAB7_ARATH (Ras-related protein Rab7 OS=Arabidopsis thaliana GN=RAB7 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.712e-16
Identity = 50/129 (38.76%), Postives = 77/129 (59.69%), Query Frame = -1
Query:  407 DFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASEN----VNKLLVGNKCDLTA--NKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAM 772
            DF  + +  D + + LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF ++  W NE    AS         +L+GNK D+    ++VVS + A+ +  E G I + ETSAK   NV+ +F+ +
Sbjct:   44 DFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWHNEFLTRASPRDPMAFPFILLGNKVDIDGGNSRVVSEKKAREWCAEKGNIVYFETSAKEDYNVDDSFLCI 172          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RASH_MOUSE (GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.542e-16
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = -1
Query:  392 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 745
            DG+T  L   DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL A  V S + A+  A   GIP++ETSAK+   VE AF  +   I+
Sbjct:   47 DGETCLLDYLDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164          
The following BLAST results are available for this feature:
BLAST of CN185843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB36_MOUSE1.590e-1639.06Ras-related protein Rab-36 OS=Mus musculus GN=Rab3... [more]
RAS_ARTSA2.076e-1635.71Ras-like protein (Fragment) OS=Artemia salina PE=3... [more]
RASH_CHICK2.076e-1639.50GTPase HRas OS=Gallus gallus GN=HRAS1 PE=1 SV=1[more]
RASD_DICDI2.076e-1634.31Ras-like protein rasD OS=Dictyostelium discoideum ... [more]
RAS1_PHYPO2.076e-1637.10Ras-like protein 1 OS=Physarum polycephalum GN=RAS... [more]
RAB34_MOUSE2.076e-1639.06Ras-related protein Rab-34 OS=Mus musculus GN=Rab3... [more]
RASL_COLTR2.712e-1631.01Ras-like protein OS=Colletotrichum trifolii GN=RAS... [more]
RASH_MSVMO2.712e-1639.50GTPase HRas OS=Moloney murine sarcoma virus GN=H-R... [more]
RAB7_ARATH2.712e-1638.76Ras-related protein Rab7 OS=Arabidopsis thaliana G... [more]
RASH_MOUSE3.542e-1639.50GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185843 ID=CN185843; Name=CN185843; organism=Citrus sinensis; type=EST; length=775bp
GAGAGAGAACATTTATATATTAGCTACATCGATGACGAACAATATACAGT
ATAGAGGACAGCAAGATAGATACCGCTATTCACCAATATTCCTAATTTGT
ACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAATGGAAACTTTAG
TAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGACAATAAACCTTC
ATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATTCCACAAAGAAC
ATTGATAAACATCAGAAATTCACCAACACTAATTCCCTTCTAAGTGGAGC
AGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCTGCACTGTTGGC
GGCCTAGCATTGTTCGAGGCAGGTTGGCTTGCCATCCTATTCTTGATTGA
AGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGCACTTTTAGCAC
TTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATGCCTTGGCTGTC
TCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTGTTACCAACTAA
AAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTCATTCAGCCATT
GCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCATAAACAACAATG
ATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTCCTAAAACGCTC
TTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTTGCCATCTTGGT
CCACAGTGCGGATTTTAAAGTCAAC
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