CN185843

Overview
NameCN185843
Unique NameCN185843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3681 contig Csv1_Contig3681:23..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RB32C_DICDI (Ras-related protein Rab-32C OS=Dictyostelium discoideum GN=rab32C PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.041e-16
Identity = 46/139 (33.09%), Postives = 74/139 (53.24%), Query Frame = -1
Query:  365 VDFKIRTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKSATNVEQAFMAMAASIKNRMASQPAS 775
            VDF+ + ++  G+ + LQ+WD AGQERF  +T  Y++ AHG ++V+D T   +F   K W ++ID  + +EN+  +L+ NKCDL        E    F ++     +  TSAK  T + +A   +   I     +Q  S
Sbjct:   63 VDFQQKVLEIMGQKVLLQLWDIAGQERFGHMTRVYFQNAHGAVIVFDATRSGTFLGAKAWKDDIDYCFNNENLPTILLANKCDLLTPPYTFPEDINTFCEQNRFNKYFYTSAKEDTGINEALEELVKIILESYQTQEQS 201          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RASN_CAVPO (GTPase NRas OS=Cavia porcellus GN=NRAS PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.041e-16
Identity = 48/130 (36.92%), Postives = 71/130 (54.62%), Query Frame = -1
Query:  359 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNN 745
            DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL   + V  + A   A   GIPF+ETSAK+   VE AF  +   I+     +  SN+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSND 175          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RASK_ORYLA (GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.041e-16
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = -1
Query:  392 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 745
            DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNKCDL   + V  + A+  A   GIPF+ETSAK+   V+ AF  +   I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PTRTVDTKQAQDLARSFGIPFIETSAKTRQGVDDAFYTLVREIR 164          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RASK_MELGA (GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.041e-16
Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = -1
Query:  392 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 745
            DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNKCDL  ++ V  + A+  A   GIPF+ETSAK+   V+ AF  +   I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 164          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RSR1_CANAL (Ras-related protein RSR1 OS=Candida albicans GN=RSR1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.890e-16
Identity = 53/164 (32.32%), Postives = 83/164 (50.61%), Query Frame = -1
Query:  305 RTVDQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKSATNVEQAFMAMAASIKNRMASQPASNNARPPTVQ----------IRGQPVNQKSG 760
            + ++ DG+   L+I DTAG  +F  +   Y +   G ++VY VTD+ S   +     ++ R   S+NV  +LVGNKCDL  ++V+S E     + + G +PF ETSA   TNV++AF+ +   I  + A+  A    +    +            GQ   QKSG
Sbjct:   42 KQIEVDGRACDLEILDTAGVAQFTAMRELYIKSGKGFLLVYSVTDENSLKELLALREQVLRIKDSDNVPMVLVGNKCDLEDDRVLSIEDGVKVSQDWGLVPFYETSAMYKTNVDEAFIDVVRQIMRKEAAISAEKKQQKELQKQQQQQQQEQDAEGQQQQQKSG 205          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RASN_XENLA (GTPase NRas OS=Xenopus laevis GN=nras PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.890e-16
Identity = 50/139 (35.97%), Postives = 77/139 (55.40%), Query Frame = -1
Query:  335 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPASNNARPPTVQI 745
            DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL  ++ V  + A+  A   GIPF+ETSAK+   VE AF  +   I + RM    +S +     ++I
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINAYREQIKRVKDSDDVPMVLVGNKCDL-PSRTVDTKQAQELARSYGIPFIETSAKTRQGVEDAFYTLVREIHQYRMKKLDSSEDNNQGCIRI 184          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RASN_PONAB (GTPase NRas OS=Pongo abelii GN=NRAS PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.890e-16
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = -1
Query:  392 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 745
            DG+T  L I DTAGQE +  +   Y R   G++ V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL   + V  + A   A   GIPF+ETSAK+   VE AF  +   I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGLLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 164          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAS1_DROYA (Ras-like protein 1 OS=Drosophila yakuba GN=Ras85D PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.890e-16
Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = -1
Query:  392 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 745
            DG+T  L I DTAGQE +  +   Y R   G ++V+ V   +SF ++  +  +I R   +E V  +LVGNKCDL A+  V+ E A+  A + GIP++ETSAK+   V+ AF  +   I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL-ASWNVNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIR 164          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAS1_DROSI (Ras-like protein 1 OS=Drosophila simulans GN=Ras85D PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.890e-16
Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = -1
Query:  392 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 745
            DG+T  L I DTAGQE +  +   Y R   G ++V+ V   +SF ++  +  +I R   +E V  +LVGNKCDL A+  V+ E A+  A + GIP++ETSAK+   V+ AF  +   I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL-ASWNVNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIR 164          
BLAST of CN185843 vs. ExPASy Swiss-Prot
Match: RAS1_DROME (Ras-like protein 1 OS=Drosophila melanogaster GN=Ras85D PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.890e-16
Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = -1
Query:  392 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIK 745
            DG+T  L I DTAGQE +  +   Y R   G ++V+ V   +SF ++  +  +I R   +E V  +LVGNKCDL A+  V+ E A+  A + GIP++ETSAK+   V+ AF  +   I+
Sbjct:   47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL-ASWNVNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIR 164          
The following BLAST results are available for this feature:
BLAST of CN185843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB32C_DICDI6.041e-1633.09Ras-related protein Rab-32C OS=Dictyostelium disco... [more]
RASN_CAVPO6.041e-1636.92GTPase NRas OS=Cavia porcellus GN=NRAS PE=2 SV=1[more]
RASK_ORYLA6.041e-1638.66GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1[more]
RASK_MELGA6.041e-1638.66GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV... [more]
RSR1_CANAL7.890e-1632.32Ras-related protein RSR1 OS=Candida albicans GN=RS... [more]
RASN_XENLA7.890e-1635.97GTPase NRas OS=Xenopus laevis GN=nras PE=2 SV=1[more]
RASN_PONAB7.890e-1638.66GTPase NRas OS=Pongo abelii GN=NRAS PE=2 SV=1[more]
RAS1_DROYA7.890e-1639.50Ras-like protein 1 OS=Drosophila yakuba GN=Ras85D ... [more]
RAS1_DROSI7.890e-1639.50Ras-like protein 1 OS=Drosophila simulans GN=Ras85... [more]
RAS1_DROME7.890e-1639.50Ras-like protein 1 OS=Drosophila melanogaster GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185843 ID=CN185843; Name=CN185843; organism=Citrus sinensis; type=EST; length=775bp
GAGAGAGAACATTTATATATTAGCTACATCGATGACGAACAATATACAGT
ATAGAGGACAGCAAGATAGATACCGCTATTCACCAATATTCCTAATTTGT
ACAAATGTTTTCTTGAAACCCAATACATTTGAAAAGAATGGAAACTTTAG
TAAAGTAACGAACAACTGACAAGAAAAGCAAATCATGACAATAAACCTTC
ATATCAAAGCATATAAGAAGAGAGAACTAGTGTTACATTCCACAAAGAAC
ATTGATAAACATCAGAAATTCACCAACACTAATTCCCTTCTAAGTGGAGC
AGCAACCAGATTTCTGGTTGACAGGCTGTCCTCGGATCTGCACTGTTGGC
GGCCTAGCATTGTTCGAGGCAGGTTGGCTTGCCATCCTATTCTTGATTGA
AGCAGCCATGGCCATGAAAGCCTGTTCGACGTTGGTGGCACTTTTAGCAC
TTGTTTCCATGAAAGGAATCCCAATTTCATCCGCAAATGCCTTGGCTGTC
TCATAGGACACAACTTTGTTCGCTGTGAGATCACACTTGTTACCAACTAA
AAGCTTGTTCACATTTTCACTTGCATATCGGTCAATTTCATTCAGCCATT
GCTTTACATTGTTGAAGCTCTCTTGATCTGTGACATCATAAACAACAATG
ATGCCATGAGCCCCACGATAGTAGCTGCTGGTTATTGTCCTAAAACGCTC
TTGGCCAGCAGTGTCCCAAATTTGGAGCTTAATGGTTTTGCCATCTTGGT
CCACAGTGCGGATTTTAAAGTCAAC
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