CN185841

Overview
NameCN185841
Unique NameCN185841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1077 contig Csv1_Contig1077:212..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17_DIACI (60S ribosomal protein L17 OS=Diaphorina citri GN=RpL17 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.391e-34
Identity = 72/111 (64.86%), Postives = 86/111 (77.48%), Query Frame = -2
Query:  302 RRAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 634
            RRA ++L++V    + +PF R+ GGVGR AQAK +    QGRWP KSA F+L LLKNAESNA+ +GLD D L I HIQVN+A + RRRTYRAHGRINPYMSSPCHIE+ LS
Sbjct:   42 RRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAK-QWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGRINPYMSSPCHIEVILS 151          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17A_SCHPO (60S ribosomal protein L17-A OS=Schizosaccharomyces pombe GN=rpl17a PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.424e-33
Identity = 70/111 (63.06%), Postives = 84/111 (75.68%), Query Frame = -2
Query:  302 RRAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 634
            ++A  +L++V  HKQA+PF RF GGVGRTAQ K      Q RWPVKS KF  DLLKNAE+NAE KGLD+D L I H+QVN A KQRRRTYRAHGR+  Y+SSP HIE+ ++
Sbjct:   42 KKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVT-QARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVA 151          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17_YARLI (60S ribosomal protein L17 OS=Yarrowia lipolytica GN=RPL17 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.142e-33
Identity = 75/132 (56.82%), Postives = 89/132 (67.42%), Query Frame = -2
Query:  239 RRAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSKK 634
            ++A  YL+ V  HK+AIPF +  G +GRT Q K      + RWPVKS KF+ DLL+NA++NAE KGLD + L ISHIQVNQA KQRRRTYRAHGRIN Y SSP HIEL LS          ET LA   S++
Sbjct:   42 QKALAYLDQVTDHKRAIPFRKHAGSIGRTGQGKEFGVT-KARWPVKSIKFVQDLLQNAQANAETKGLDKETLVISHIQVNQAPKQRRRTYRAHGRINAYQSSPSHIELILSEPAEEIAKAKETSLAHISSRQ 172          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17_DICDI (60S ribosomal protein L17 OS=Dictyostelium discoideum GN=rpl17 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.142e-33
Identity = 70/110 (63.64%), Postives = 85/110 (77.27%), Query Frame = -2
Query:  302 RAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 631
            RAK YL +V+AH++ IPF RF GGVGRT QAK      QGRWP KS + IL LL+NAE+NAE KGL+V+ L I+H+QV +AQ+QRRRTYRAHGRINPYM SP  +E  L+
Sbjct:   45 RAKAYLNNVLAHRECIPFRRFKGGVGRTGQAKI-FGTSQGRWPKKSVEHILSLLQNAEANAEAKGLNVEKLKIAHVQVQRAQQQRRRTYRAHGRINPYMCSPSTVEFILT 153          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17_ASPFU (60S ribosomal protein L17 OS=Aspergillus fumigatus GN=rpl17 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.142e-33
Identity = 68/111 (61.26%), Postives = 85/111 (76.58%), Query Frame = -2
Query:  302 RRAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 634
            +RA  +LE+V    + +PF R+ G +GRTAQ K    + + RWPVKSA+F+LDLLKNAE+NA+ KGLD   L + HIQVNQA K RRRTYRAHGRINPYM++PCHIEL L+
Sbjct:   49 QRALAFLENVKNKTEVVPFRRYAGSIGRTAQGKQWGVS-KARWPVKSAQFLLDLLKNAEANADTKGLDTGNLIVKHIQVNQAPKGRRRTYRAHGRINPYMTNPCHIELILT 158          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17B_SCHPO (60S ribosomal protein L17-B OS=Schizosaccharomyces pombe GN=rpl17b PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.410e-33
Identity = 69/111 (62.16%), Postives = 83/111 (74.77%), Query Frame = -2
Query:  302 RRAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 634
            ++A  +L++V  HKQA+PF RF GGVGRTAQ K      Q RWPVKS  F  DLLKNAE+NAE KGLD+D L I H+QVN A KQRRRTYRAHGR+  Y+SSP HIE+ ++
Sbjct:   42 KKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVT-QARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVA 151          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17_DEBHA (60S ribosomal protein L17 OS=Debaryomyces hansenii GN=RPL17 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.574e-32
Identity = 68/110 (61.82%), Postives = 81/110 (73.64%), Query Frame = -2
Query:  302 RAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 631
            RA++YL+ V+ H++AIPF RF   +GRT Q K      + RWP KS  FI DLL+N ++NAE KGLD   L +SHIQVNQA KQRRRTYRAHGRIN Y SSPCHIEL L+
Sbjct:   43 RAQKYLDQVLDHQRAIPFRRFNSSIGRTGQGKEFGVT-KARWPAKSVNFIKDLLRNGQANAESKGLDASKLKVSHIQVNQAPKQRRRTYRAHGRINAYQSSPCHIELILT 151          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17A_YEAST (60S ribosomal protein L17-A OS=Saccharomyces cerevisiae GN=RPL17A PE=1 SV=4)

HSP 1 Score: 138.272 bits (347), Expect = 3.507e-32
Identity = 68/110 (61.82%), Postives = 82/110 (74.55%), Query Frame = -2
Query:  302 RAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 631
            +A++YLE V+ H++AIPF RF   +GRTAQ K      + RWP KS KF+  LL+NA +NAE KGLD   LY+SHIQVNQA KQRRRTYRAHGRIN Y SSP HIEL ++
Sbjct:   43 KAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVT-KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVT 151          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17_THEPA (60S ribosomal protein L17 OS=Theileria parva GN=RPL17 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.580e-32
Identity = 67/106 (63.21%), Postives = 81/106 (76.42%), Query Frame = -2
Query:  311 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 628
            AKRYL DV+  K+ +PF +F GGVGR AQAK    + QGRWP KS KF+LDLLKN ESNAEVKGL+   L + H+QVN+A   RRR+YRAHGRI P++S PCH+EL
Sbjct:   44 AKRYLNDVIERKRCVPFRKFRGGVGRCAQAK-AFKHTQGRWPEKSCKFLLDLLKNLESNAEVKGLEQSKLRLEHVQVNRAPVGRRRSYRAHGRIIPFLSHPCHVEL 148          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17_THEAN (60S ribosomal protein L17 OS=Theileria annulata GN=RPL17 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.981e-32
Identity = 67/106 (63.21%), Postives = 81/106 (76.42%), Query Frame = -2
Query:  311 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 628
            AKRYL DV+  K+ +PF +F GGVGR AQAK    + QGRWP KS KF+LDLLKN ESNAEVKGL+   L + H+QVN+A   RRR+YRAHGRI P++S PCH+EL
Sbjct:   44 AKRYLNDVIDRKRCVPFRKFRGGVGRCAQAK-AFKHTQGRWPEKSCKFLLDLLKNLESNAEVKGLEQSKLRLEHVQVNRAPVGRRRSYRAHGRIIPFLSHPCHVEL 148          
The following BLAST results are available for this feature:
BLAST of CN185841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RL17_DIACI6.391e-3464.8660S ribosomal protein L17 OS=Diaphorina citri GN=R... [more]
RL17A_SCHPO1.424e-3363.0660S ribosomal protein L17-A OS=Schizosaccharomyces... [more]
RL17_YARLI4.142e-3356.8260S ribosomal protein L17 OS=Yarrowia lipolytica G... [more]
RL17_DICDI4.142e-3363.6460S ribosomal protein L17 OS=Dictyostelium discoid... [more]
RL17_ASPFU4.142e-3361.2660S ribosomal protein L17 OS=Aspergillus fumigatus... [more]
RL17B_SCHPO5.410e-3362.1660S ribosomal protein L17-B OS=Schizosaccharomyces... [more]
RL17_DEBHA1.574e-3261.8260S ribosomal protein L17 OS=Debaryomyces hansenii... [more]
RL17A_YEAST3.507e-3261.8260S ribosomal protein L17-A OS=Saccharomyces cerev... [more]
RL17_THEPA4.580e-3263.2160S ribosomal protein L17 OS=Theileria parva GN=RP... [more]
RL17_THEAN5.981e-3263.2160S ribosomal protein L17 OS=Theileria annulata GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185841 ID=CN185841; Name=CN185841; organism=Citrus sinensis; type=EST; length=665bp
TTTTTTTTTTTTTTTTTAAGCTTGAAAAGTCTTTAATTTTCATAACCCTT
CAACAGTATGACTGAGGATTCTAACAAAACAGTAAACTGGACGTAATATG
AAATAAACAAAATATGATGTCTGATTTGACTAAATAACATCTCAGTCACT
ATTAAAGGTAAAAAAACTCACTTCATCAAGAACACAAAATAGAAAATCAG
GGCACTCTCCAATTGCTATGCTAAACCTCAGACAATTACTTCTTTGATTT
GCTAGTTGCCAACTGGGTCTCAGGCTCTTTCTTTACTGGCTCTTCCTTTT
CAGATAAGGTCAACTCAATATGGCAGGGAGAGGACATGTAAGGATTAATT
CTTCCATGAGCACGGTATGTGCGGCGCCTTTGCTTTTGTGCCTGGTTGAC
TTGGATGTGAGAAATGTAGAGTGCATCAACATCTAAACCTTTCACCTCAG
CATTACTCTCAGCATTCTTGAGCAAGTCAAGAATGAACTTTGCTGATTTG
ACAGGCCATCGTCCCTGTCCATTTGGATGCCTATTCTTTGCCTGAGCAGT
ACGTCCAACACCACCGCAGAATCGTGTGAAGGGAATGGCCTGTTTATGGG
CCATAACATCCTCCAAATACCTCTTAGCCCTTCGTCAAAGGCAATTTCCT
GATGGCATGGGCAGT
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