CN185841

Overview
NameCN185841
Unique NameCN185841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1077 contig Csv1_Contig1077:212..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL17B_YEAST (60S ribosomal protein L17-B OS=Saccharomyces cerevisiae GN=RPL17B PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.812e-32
Identity = 67/110 (60.91%), Postives = 82/110 (74.55%), Query Frame = -2
Query:  302 RAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 631
            +A++YL+ V+ H++AIPF RF   +GRTAQ K      + RWP KS KF+  LL+NA +NAE KGLD   LY+SHIQVNQA KQRRRTYRAHGRIN Y SSP HIEL ++
Sbjct:   43 KAQKYLDQVLDHQRAIPFRRFNSSIGRTAQGKEFGVT-KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVT 151          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_METBF (50S ribosomal protein L22P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = -2
Query:  302 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 628
            A+++LEDV+A KQA+PF R   G G       + P   GR+PV ++K IL +L+NAESNAE KGL+   +YI+H  + + +  R    RA GR  P  +   +IE+ LS
Sbjct:   45 ARKFLEDVIALKQAVPFKRHHDGSGH-----RKGPMAAGRYPVSASKEILKILRNAESNAEYKGLEPANMYITHAAIQRGRVIRGFMPRARGRATPKDTETVNIEMILS 148          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_IGNH4 (50S ribosomal protein L22P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 43/106 (40.57%), Postives = 62/106 (58.49%), Query Frame = -2
Query:  311 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 628
            AK YLE V+  ++ +P+ R+ G V       ++H    GR+PVK+AK+ L LLKN E+NAE KGL+V+ L I HI  ++    +R   RA GR  P      H+E+
Sbjct:   48 AKAYLERVIKMEEPVPYRRYHGKVAHKRGLADKHGIPMGRYPVKAAKYFLKLLKNVEANAEFKGLEVEKLKIVHIASHKGMTIKRWMPRAFGRATPEFERRTHLEV 153          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_METMA (50S ribosomal protein L22P OS=Methanosarcina mazei GN=rpl22p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.087e-15
Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = -2
Query:  302 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 628
            A+++LEDV+A KQA+PF R   G G       + P   GR+PV ++K IL +LKNAESNAE KGL+   +YI H  + + +       RA GR +P  +   +IE+ LS
Sbjct:   45 ARKFLEDVIAMKQAVPFKRHSEGAGH-----RKGPMAGGRYPVSASKEILKVLKNAESNAEYKGLEPANMYIIHAAIQRGRVIHGFMPRARGRASPKDTETVNIEMILS 148          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_THEVO (50S ribosomal protein L22P OS=Thermoplasma volcanium GN=rpl22p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.133e-14
Identity = 41/109 (37.61%), Postives = 66/109 (60.55%), Query Frame = -2
Query:  302 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 628
            AK+ LEDV++ K AIP+ R+   V       +R   G GR+PVK+AK  +DLL N E+NAE KG++ D+L I H+  N+ +  ++ T +A+GR         ++E+ ++
Sbjct:   42 AKQILEDVVSKKYAIPYFRYLDSVS------HRPGKGPGRYPVKAAKVFIDLLSNVENNAEFKGMNTDSLIIKHVAANKGRMIKKYTPKAYGRAGANFKDLINLEVIVT 144          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_METBU (50S ribosomal protein L22P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.480e-14
Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = -2
Query:  302 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 628
            A++YLEDV+  KQA+PF R    +G       + P   GR+PVK A  +L LLKNAESNAE KGL+ + ++I+H  +N+ +       RA GR +P  +   ++E+ +S
Sbjct:   45 ARQYLEDVVILKQAVPFGRHNDSLGH-----RKGPMAAGRYPVKVASEMLKLLKNAESNAEYKGLNPEHMFIAHTAMNRGRVIHGMRPRARGRASPENTETVNLEMIIS 148          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_METS3 (50S ribosomal protein L22P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.297e-14
Identity = 43/109 (39.45%), Postives = 66/109 (60.55%), Query Frame = -2
Query:  305 RAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 631
            +AK YLEDV+  K+++PF R    VG     K +     GR+PVK+A+ +L +L+NAE+NAE KG+D + L+I HI  ++         RA GR+ P+ +   HI++ L
Sbjct:   45 KAKNYLEDVIDMKKSVPFKRHNRQVGHR---KGQEGWAAGRYPVKAAEQVLKVLENAEANAEYKGMDTENLFIEHISSHRGVVLPGVIPRAFGRMTPFNTPTTHIQIVL 150          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_METAC (50S ribosomal protein L22P OS=Methanosarcina acetivorans GN=rpl22p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.346e-14
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = -2
Query:  302 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 628
            A+++LEDV+A KQA+PF +   G G       + P   G++P+ ++K IL +LKNAESNAE KGL+   +YI H  + + +       RA GR  P  +   +IE+ LS
Sbjct:   45 ARKFLEDVIAMKQAVPFKKHHDGSGH-----RKGPMAAGKYPISASKEILKVLKNAESNAEYKGLEPANMYIIHAAIQRGRVIHGFMPRARGRATPKDTETVNIEMILS 148          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_STAMF (50S ribosomal protein L22P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = -2
Query:  305 AKRYLEDVMAHKQAIPFTRFCGGVG--RTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 628
            AK+ LE+V+A ++ IPF R+ G +   R   AK + P G  R+PVK+AK++L LL++ E+NA+ KGLD D L I HI  ++    +R   RA GR  P      H+E+ +
Sbjct:   46 AKKLLENVIALREPIPFKRYKGKLSHKRGLPAKWKWPIG--RYPVKAAKYLLRLLEHVEANADNKGLDKDKLVIVHIAAHKGMTLKRWMPRAFGRATPKFRRTSHVEIVV 153          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_SULAC (50S ribosomal protein L22P OS=Sulfolobus acidocaldarius GN=rpl22p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.137e-13
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = -2
Query:  305 RRAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 634
            + A+ +L +V+  K+A+PF R+  G    +    +     GR+P K+ K++L LL NAE+NA  KGLD+D L I HI  ++    +R   RA GR         HIE+ L
Sbjct:   44 KEAREFLNNVLEEKEALPFWRYSHGTSHRSNISRKWKVKSGRYPKKAIKYVLKLLDNAENNANSKGLDIDNLKIVHIAAHKGLVLKRYMTRAFGRSTRKYKYLSHIEVIL 153          
The following BLAST results are available for this feature:
BLAST of CN185841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RL17B_YEAST7.812e-3260.9160S ribosomal protein L17-B OS=Saccharomyces cerev... [more]
RL22_METBF2.982e-1542.2050S ribosomal protein L22P OS=Methanosarcina barke... [more]
RL22_IGNH42.982e-1540.5750S ribosomal protein L22P OS=Ignicoccus hospitali... [more]
RL22_METMA5.087e-1542.2050S ribosomal protein L22P OS=Methanosarcina mazei... [more]
RL22_THEVO1.133e-1437.6150S ribosomal protein L22P OS=Thermoplasma volcani... [more]
RL22_METBU1.480e-1440.3750S ribosomal protein L22P OS=Methanococcoides bur... [more]
RL22_METS33.297e-1439.4550S ribosomal protein L22P OS=Methanobrevibacter s... [more]
RL22_METAC7.346e-1439.4550S ribosomal protein L22P OS=Methanosarcina aceti... [more]
RL22_STAMF1.253e-1340.9150S ribosomal protein L22P OS=Staphylothermus mari... [more]
RL22_SULAC2.137e-1336.3650S ribosomal protein L22P OS=Sulfolobus acidocald... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185841 ID=CN185841; Name=CN185841; organism=Citrus sinensis; type=EST; length=665bp
TTTTTTTTTTTTTTTTTAAGCTTGAAAAGTCTTTAATTTTCATAACCCTT
CAACAGTATGACTGAGGATTCTAACAAAACAGTAAACTGGACGTAATATG
AAATAAACAAAATATGATGTCTGATTTGACTAAATAACATCTCAGTCACT
ATTAAAGGTAAAAAAACTCACTTCATCAAGAACACAAAATAGAAAATCAG
GGCACTCTCCAATTGCTATGCTAAACCTCAGACAATTACTTCTTTGATTT
GCTAGTTGCCAACTGGGTCTCAGGCTCTTTCTTTACTGGCTCTTCCTTTT
CAGATAAGGTCAACTCAATATGGCAGGGAGAGGACATGTAAGGATTAATT
CTTCCATGAGCACGGTATGTGCGGCGCCTTTGCTTTTGTGCCTGGTTGAC
TTGGATGTGAGAAATGTAGAGTGCATCAACATCTAAACCTTTCACCTCAG
CATTACTCTCAGCATTCTTGAGCAAGTCAAGAATGAACTTTGCTGATTTG
ACAGGCCATCGTCCCTGTCCATTTGGATGCCTATTCTTTGCCTGAGCAGT
ACGTCCAACACCACCGCAGAATCGTGTGAAGGGAATGGCCTGTTTATGGG
CCATAACATCCTCCAAATACCTCTTAGCCCTTCGTCAAAGGCAATTTCCT
GATGGCATGGGCAGT
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