CN185841

Overview
NameCN185841
Unique NameCN185841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1077 contig Csv1_Contig1077:212..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_PYRAB (50S ribosomal protein L22P OS=Pyrococcus abyssi GN=rpl22p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.000e-11
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = -2
Query:  305 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 628
            A RYL+DV+A ++ +P  R+    G     K     G GR+PVK AK I  +L NA++NA+ KGLD D L I HI  ++    R    RA GR  P+     HIE+ +
Sbjct:   47 ALRYLDDVIALRRPVPLKRYNDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVLRGWYPRAFGRPTPFNEQTTHIEVVV 150          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_THEAC (50S ribosomal protein L22P OS=Thermoplasma acidophilum GN=rpl22p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.412e-11
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = -2
Query:  302 RAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 631
            RAK  ++ V+    AIP+ R+   V       +R   G GR+PVK+AK    LL+N E+NAE KGL+ D L I HI  N+ +  ++ T +A+GR         ++E+ ++
Sbjct:   44 RAKEIIDAVINKTYAIPYFRYLDSVS------HRPGVGPGRYPVKAAKAFKQLLENVENNAEFKGLNTDNLVIKHIAANKGRMIKKYTPKAYGRAGANFKDLINLEIIVT 147          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_SULTO (50S ribosomal protein L22P OS=Sulfolobus tokodaii GN=rpl22p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.412e-11
Identity = 37/108 (34.26%), Postives = 60/108 (55.56%), Query Frame = -2
Query:  305 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 628
            AK++L +V+  K+A+PF +   G    +    +     GR+P K+ K++L +L+NAE+NA  KGLD++ + I HI  ++    +R   RA GR         HIE+ L
Sbjct:   46 AKQFLNNVLEEKEALPFWKHSHGASHRSNISPKWKVKSGRYPKKAIKYVLKVLENAENNANSKGLDLENVKIVHIAAHKGIILKRYMPRAFGRSTRKYRYTSHIEVIL 153          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_METMJ (50S ribosomal protein L22P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.412e-11
Identity = 44/109 (40.37%), Postives = 61/109 (55.96%), Query Frame = -2
Query:  302 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 628
            AK YL DV+A K+AIPF RF   V    +  ++ P   GR+PVK+A+  + LL++ E NAE  GLDV+ L I H   N  +  R    RA GR  P      +IE+ ++
Sbjct:   45 AKAYLTDVVALKKAIPFKRFNRNVAHK-RGLSKWP--AGRYPVKAAEAYIRLLESVEKNAEYIGLDVENLRIDHAAANTGRGLRAFFPRAMGRATPKRRETVNIEIVVT 150          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_PYRFU (50S ribosomal protein L22P OS=Pyrococcus furiosus GN=rpl22p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 43/108 (39.81%), Postives = 57/108 (52.78%), Query Frame = -2
Query:  305 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 628
            A RYL+DV+A K+ +P  R+    G     K     G GR+PVK AK I  +L N ++NA  KGLD D L I HI  ++    R    RA GR  P+     HIE+ +
Sbjct:   47 ALRYLDDVIALKRPVPLKRYNDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNVKNNAVQKGLDPDKLKIIHIAAHKGPVLRGWYPRAFGRATPFNEQTTHIEVVV 150          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_AERPE (50S ribosomal protein L22P OS=Aeropyrum pernix GN=rpl22p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.820e-11
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = -2
Query:  311 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 628
            A+RYL  V+  ++A+PF R  G         ++     GR+PVK+A+++L LL N E+NA  K LDV+ L I H+  ++    +R   RA GR  P      HIE+
Sbjct:   46 ARRYLRAVIEKREAVPFRRAHGKQAHRRGLADKWGWPVGRYPVKAARYMLKLLDNVEANAANKNLDVERLKIIHVAAHKGITLKRWMPRAWGRATPRNRVHSHIEI 151          
BLAST of CN185841 vs. ExPASy Swiss-Prot
Match: RL22_SULSO (50S ribosomal protein L22P OS=Sulfolobus solfataricus GN=rpl22p PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = -2
Query:  305 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 628
            AK +L  V+  K+A+PF R+  G    +    +     GR+P K+ + +L +L+NAE+NA  KGLDVD L I HI  ++    +R   RA GR         +IE+ L
Sbjct:   46 AKDFLNRVLEEKEALPFWRYNKGASHKSNISAKWKIKAGRYPKKAIRQVLKVLENAEANATNKGLDVDKLIIRHIAAHKGITLQRYMPRAFGRATAKYRRTSNIEVIL 153          
The following BLAST results are available for this feature:
BLAST of CN185841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RL22_PYRAB2.000e-1139.8150S ribosomal protein L22P OS=Pyrococcus abyssi GN... [more]
RL22_THEAC3.412e-1135.4550S ribosomal protein L22P OS=Thermoplasma acidoph... [more]
RL22_SULTO3.412e-1134.2650S ribosomal protein L22P OS=Sulfolobus tokodaii ... [more]
RL22_METMJ3.412e-1140.3750S ribosomal protein L22P OS=Methanoculleus maris... [more]
RL22_PYRFU4.457e-1139.8150S ribosomal protein L22P OS=Pyrococcus furiosus ... [more]
RL22_AERPE5.820e-1136.7950S ribosomal protein L22P OS=Aeropyrum pernix GN=... [more]
RL22_SULSO7.602e-1136.1150S ribosomal protein L22P OS=Sulfolobus solfatari... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185841 ID=CN185841; Name=CN185841; organism=Citrus sinensis; type=EST; length=665bp
TTTTTTTTTTTTTTTTTAAGCTTGAAAAGTCTTTAATTTTCATAACCCTT
CAACAGTATGACTGAGGATTCTAACAAAACAGTAAACTGGACGTAATATG
AAATAAACAAAATATGATGTCTGATTTGACTAAATAACATCTCAGTCACT
ATTAAAGGTAAAAAAACTCACTTCATCAAGAACACAAAATAGAAAATCAG
GGCACTCTCCAATTGCTATGCTAAACCTCAGACAATTACTTCTTTGATTT
GCTAGTTGCCAACTGGGTCTCAGGCTCTTTCTTTACTGGCTCTTCCTTTT
CAGATAAGGTCAACTCAATATGGCAGGGAGAGGACATGTAAGGATTAATT
CTTCCATGAGCACGGTATGTGCGGCGCCTTTGCTTTTGTGCCTGGTTGAC
TTGGATGTGAGAAATGTAGAGTGCATCAACATCTAAACCTTTCACCTCAG
CATTACTCTCAGCATTCTTGAGCAAGTCAAGAATGAACTTTGCTGATTTG
ACAGGCCATCGTCCCTGTCCATTTGGATGCCTATTCTTTGCCTGAGCAGT
ACGTCCAACACCACCGCAGAATCGTGTGAAGGGAATGGCCTGTTTATGGG
CCATAACATCCTCCAAATACCTCTTAGCCCTTCGTCAAAGGCAATTTCCT
GATGGCATGGGCAGT
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