CN185838
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_ICTPU (40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 4.626e-41 Identity = 82/129 (63.57%), Postives = 100/129 (77.52%), Query Frame = 3 Query: 75 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAQK 461 +VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY P+ +FVF F+T FGGGK+TGF ++YDS+D AKK EPKYRL R+GL K + SRKQ KERKNR KK+RG KK A +K Sbjct: 4 SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFKTQFGGGKTTGFAMVYDSLDYAKKNEPKYRLARHGLYEKKKTSRKQRKERKNRMKKVRGTKKASVGAAGKK 131
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_MACFA (40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 6.042e-41 Identity = 85/128 (66.41%), Postives = 98/128 (76.56%), Query Frame = 3 Query: 78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAQK 461 VTIRTRKFMTNRLL RKQ VI VLHPG+A V K E++EKLA+MY P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL K + SRKQ KERKNR KK+RG K +K Sbjct: 5 VTIRTRKFMTNRLLQRKQMVIGVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKKK 131
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_TAKRU (40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.031e-40 Identity = 85/129 (65.89%), Postives = 101/129 (78.29%), Query Frame = 3 Query: 78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAQKK 464 VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY P+ +FVF FRT FGGGK+TGF ++YDS+D AKK EPK+RL R+GL K + SRKQ KERKNR KK+RG K KAS A KK Sbjct: 5 VTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLARHGLFEKKKTSRKQRKERKNRMKKVRGTK--KASVGASKK 130
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_DICDI (40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 2.539e-39 Identity = 77/118 (65.25%), Postives = 97/118 (82.20%), Query Frame = 3 Query: 63 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKK 416 M AV +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK +A+++ V DP +IF+F F+T FGGGKSTGFGLIYD+++ AKK+EPKYRL R GL TK + SRKQ KE+KNR KK Sbjct: 1 MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLFGFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTKPQTSRKQRKEKKNRLKK 118
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_RHIRA (40S ribosomal protein S24 OS=Rhizomucor racemosus GN=RPS24 PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 4.330e-39 Identity = 79/125 (63.20%), Postives = 97/125 (77.60%), Query Frame = 3 Query: 66 ADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 440 AD AVTIRTRKF+TNRLL RKQ V+DV+HPG ANVSK EL+ K+ +MY D + VF F+THFGGGK+TGF LIYD+V++ K FEPK+RL+R GL + RKQ KE+KNR KK RGV+K+K Sbjct: 20 ADAAVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKA-DKEVVSVFGFKTHFGGGKTTGFALIYDNVEALKNFEPKHRLVRIGLAEAPKGGRKQRKEKKNREKKFRGVRKSK 143
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_ORYLA (40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 7.386e-39 Identity = 79/128 (61.72%), Postives = 97/128 (75.78%), Query Frame = 3 Query: 78 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAQK 461 VTIRTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY P+ +FVF FRT FGGGK+TGF ++YDS+D AKK EPK+RL +GL K + SRKQ ER+NR KK+R +KK A +K Sbjct: 5 VTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLATHGLYEKKKTSRKQRTERQNRMKKVRSIKKASVGAAGKK 131
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_YEAST (40S ribosomal protein S24 OS=Saccharomyces cerevisiae GN=RPS24A PE=1 SV=3) HSP 1 Score: 154.451 bits (389), Expect = 3.103e-37 Identity = 82/130 (63.08%), Postives = 100/130 (76.92%), Query Frame = 3 Query: 75 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRGVKKTKASDAAQK 461 AVTIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y + +++ VF FRT FGGGKS GFGL+Y+SV AKKFEP YRL+R GL KVEK SR+Q K++KNR KKI G K A A++ Sbjct: 4 AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARR 132
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24B_SCHPO (40S ribosomal protein S24-B OS=Schizosaccharomyces pombe GN=rps24b PE=2 SV=3) HSP 1 Score: 152.91 bits (385), Expect = 9.029e-37 Identity = 77/132 (58.33%), Postives = 99/132 (75.00%), Query Frame = 3 Query: 72 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRGVKKTKASDAAQKK 464 +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK E++EKLA+MY D + F RTHFGGG+STGF LIYDS +S KKFEP YRL+R G ++K +R+Q K+RKNR KK+ G K A ++++ Sbjct: 3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKT-DSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFGTGKRLAKRKSKQQ 133
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24A_SCHPO (40S ribosomal protein S24-A OS=Schizosaccharomyces pombe GN=rps24a PE=2 SV=3) HSP 1 Score: 149.058 bits (375), Expect = 1.304e-35 Identity = 73/132 (55.30%), Postives = 100/132 (75.76%), Query Frame = 3 Query: 72 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRGVKKTKASDAAQKK 464 +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK +L+EKL +MY D +++ F RTH+GGG++TGF LIYD V++ KKFEP YRL+R G ++K +R+Q K+RKNR KK+ G K A ++++ Sbjct: 3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKT-DASAVQAFGLRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFGTGKRLAKRKSKQQ 133
BLAST of CN185838 vs. ExPASy Swiss-Prot
Match: RS24_PYRKO (30S ribosomal protein S24e OS=Pyrococcus kodakaraensis GN=rps24e PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 8.510e-11 Identity = 35/97 (36.08%), Postives = 54/97 (55.67%), Query Frame = 3 Query: 84 IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK 374 I+ + N+LL RK+ DVLH G S+ +K KL M D+ DPN+ + R++FG S G+ Y++ + EP+Y L+R+GL K E+ Sbjct: 3 IKVTEIRENKLLGRKEIYFDVLHEGEPTPSREAVKGKLVAMLDL-DPNTTVIQYIRSYFGSNVSKGYAKAYETRERMLYIEPEYILVRDGLVQKQEE 98 The following BLAST results are available for this feature:
BLAST of CN185838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185838 ID=CN185838; Name=CN185838; organism=Citrus sinensis; type=EST; length=542bpback to top |