CN185836

Overview
NameCN185836
Unique NameCN185836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_METB6 (Elongation factor 1-alpha OS=Methanoregula boonei (strain 6A8) GN=tuf PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.234e-57
Identity = 107/201 (53.23%), Postives = 140/201 (69.65%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 614
            KPLRLP+QD Y I GIGTVPVGRVETG++K GM V+F P+    E+KS+EMHHE + +A+PGDNVGFNV+ +A  D++RG V   + + P   A  FT+QV+++ HP  I  GY PV  CHT+  A  F EL  K+D RSG+  E+ P FLK GDA +V++ PTKPMV+E   + P LGRFAVRDM  T+A G+   ++ K
Sbjct:  223 KPLRLPIQDSYSISGIGTVPVGRVETGIMKKGMKVSFMPANKDGEIKSIEMHHEEIPQAVPGDNVGFNVRGIAKGDIRRGDVCGPA-EQPPTVADEFTAQVVVLQHPSAITVGYTPVFHCHTTQTACTFIELKKKLDPRSGQTKEENPTFLKTGDAAIVQIKPTKPMVIENVKELPQLGRFAVRDMGSTIAAGMCIAIQPK 422          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.836e-57
Identity = 106/201 (52.74%), Postives = 143/201 (71.14%), Query Frame = 3
Query:   15 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 617
            PLRLP+QDVY I G+GTVPVGRVETG+++PG  V F P+G   E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  228 PLRLPIQDVYSITGVGTVPVGRVETGIIRPGDKVIFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.928e-57
Identity = 108/201 (53.73%), Postives = 147/201 (73.13%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 614
            KPLR+P+Q+VY I G+G VPVGRVETGVLK G  V F P G   EV+S+E HH  +++A PGDN+GFNV+ V  KD+KRG VA  S + P   A  FT+Q+I++ HP  +  GY PV+  HT+ +A + +EL +KID ++GKE+EK P+FLK+GD+ +VKM P K +VVE F ++P LGRFA+RDM +TV VGV+ +V+ K
Sbjct:  231 KPLRIPIQEVYSISGVGVVPVGRVETGVLKVGDKVVFMPVGKVGEVRSIETHHTKIEKAEPGDNIGFNVRGVEKKDIKRGDVAG-SLNVPPTVADEFTAQIIVIWHPTAVSVGYTPVVHIHTASVACRITELTSKIDPKTGKEVEKNPQFLKSGDSAIVKMKPIKELVVEKFREFPALGRFAMRDMGKTVGVGVVIDVKPK 430          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.166e-56
Identity = 107/197 (54.31%), Postives = 137/197 (69.54%), Query Frame = 3
Query:   15 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            PLR+P+QDVY I G+GTVPVGRVETGV+K G  V F P+G + EVKS+EMHHE  + A PGDN+GFNV+ V   D++RG VA +  D PA  A  F +Q++++ HPG I  GY PV  CHTS +A  F EL  K+D  +G+  E+ P FLK G+A  VK+ PTKPMV+E     P +GRFA+RDM QTVA G+  +V
Sbjct:  214 PLRIPIQDVYSITGVGTVPVGRVETGVMKKGENVIFEPAGASGEVKSIEMHHETFETAEPGDNIGFNVRGVGKNDIRRGDVAGHVDDAPA-VAKEFDAQIVVLQHPGVITVGYTPVFHCHTSQVACTFLELTAKLDPATGQVAEENPDFLKTGNAAFVKVKPTKPMVIENAKKIPQMGRFAIRDMGQTVAAGLCIDV 409          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.166e-56
Identity = 106/201 (52.74%), Postives = 141/201 (70.15%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 614
            KP RLP+QDVY I GIGTVPVGR+ETG++K GM V+F P+    E+KS+EMHHE   +ALPGDNVGFNV+ V   D++RG V   + D P   A  FT+Q++++ HP  I  GY PV  CHT+ IA  F EL  K+D RSG+  E+ P FLK+GDA +V++ P++PMV+E+  + P LGRFA+RDM  T+A G+   V+ K
Sbjct:  223 KPFRLPIQDVYSISGIGTVPVGRIETGIMKKGMKVSFMPANKDGEIKSIEMHHEEQPQALPGDNVGFNVRGVGKNDIRRGDVCGPA-DIPPTVADEFTAQIVVLQHPSAITVGYTPVFHCHTAQIACTFVELRKKLDPRSGQTKEENPTFLKSGDAAIVQIKPSRPMVIESVKEIPQLGRFAIRDMGTTIAAGMCIAVQPK 422          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_THEVO (Elongation factor 1-alpha OS=Thermoplasma volcanium GN=tuf PE=3 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.523e-56
Identity = 107/201 (53.23%), Postives = 141/201 (70.15%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 614
            KPLR+P++DVY I GIGTVPVGRVETGVLKPG  V F P+    +VKS+EMHHE LQ+A PGDN+GFNV+ +A  D+KRG V  +  D P      FT+Q++++NHP  I  GY PV   HT+ +A K  E+V  ++ + G  L+ +P F+K GD  +VK+IP KP+V+E  S+ P LGRFAVRDM QTVA G   ++EK+
Sbjct:  225 KPLRVPVEDVYSITGIGTVPVGRVETGVLKPGDKVIFLPADKQGDVKSIEMHHEPLQQAEPGDNIGFNVRGIAKNDIKRGDVCGH-LDSPPTVVRAFTAQIVVLNHPSVIAPGYKPVFHVHTAQVACKIDEIVRTLNPKDGTTLKDKPDFIKTGDIAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEKR 424          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.989e-56
Identity = 104/198 (52.53%), Postives = 144/198 (72.73%), Query Frame = 3
Query:   15 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 608
            PLR+P+QDVY I G+GTVPVGRVETGVLK G  V F P G+  EV+S+EMHHE +++A+PGDN+GFNV+ V+  D+KRG VA +  ++P   A  FT++V ++ HP  I  GY PV+  HT+ +A +  E+  KID R+GK +E+ P FLK GDA +V   P KPMV+E F ++ PLGRFA+RDM +TV +G++ +V+
Sbjct:  236 PLRIPIQDVYSITGVGTVPVGRVETGVLKVGDKVVFMPPGVGGEVRSIEMHHEKIEQAMPGDNIGFNVRGVSKNDIKRGDVAGH-PENPPTVADQFTARVFVIWHPSAIAVGYTPVIHAHTASVASRIIEIKQKIDPRTGKVIEENPSFLKPGDAAVVVFKPLKPMVIEKFQEFQPLGRFAMRDMGKTVGIGIVTDVK 432          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1AS_PORPU (Elongation factor 1-alpha S OS=Porphyra purpurea GN=TEF-S PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.989e-56
Identity = 123/221 (55.66%), Postives = 155/221 (70.14%), Query Frame = 3
Query:   15 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG-LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL-------------EKEPK------FLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 617
            PLRLPLQDVYKIGGIGTVPVGRVETG+LK GM VTF P+G    EVKSVEMHH ++ +A+PGDNVGFNVK + VKD+KRG V  ++K+DP      F + VII +H   I NGY PVLDCHT+HIA KF+ +++K D+R GK+              + EP+        K G++  V + PTK MVVE +S Y PLGRFAVRDM++TVAVGVI+ V+ ++
Sbjct:  261 PLRLPLQDVYKIGGIGTVPVGRVETGILKAGMQVTFEPAGKAAVEVKSVEMHHTSVPQAIPGDNVGFNVK-LTVKDIKRGDVCGDTKNDPPIPTECFLANVIIQDHK-NIRNGYTPVLDCHTAHIACKFASILSKKDKR-GKQTHDVSDDTEWATKDDAEPRNNRMNIAAKTGESVNVWLQPTKAMVVEAYSMYSPLGRFAVRDMKKTVAVGVIQCVQPRN 478          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_PYRHO (Elongation factor 1-alpha OS=Pyrococcus horikoshii GN=tuf PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.431e-56
Identity = 106/208 (50.96%), Postives = 147/208 (70.67%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 611
            KPLR+P+QDVY I G+GTVPVGRVETG LK G VV F P+       +  EVKS+EMHHE LQEALPGDN+GFNV+ V+  D+KRG VA ++   P   R    F +Q+I++NHP  I  GY+PVL  HT+ I V+F +++ K+D R+G  +E+ P+F+K GD+ +V + P KP+V+E   + P LGRFA+RDM  T+A G++ +++K
Sbjct:  219 KPLRIPIQDVYSIKGVGTVPVGRVETGKLKVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEALPGDNIGFNVRGVSKNDIKRGDVAGHTDKPPTVVRTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQIPVRFEQILAKVDPRTGNIVEENPQFIKTGDSAIVVLRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQK 426          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAB (Elongation factor 1-alpha OS=Pyrococcus abyssi GN=tuf PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 7.558e-56
Identity = 107/208 (51.44%), Postives = 145/208 (69.71%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 611
            KPLR+P+QDVY I G+GTVPVGRVETG LK G VV F P+       +  EVKS+EMHHE LQEALPGDN+GFNV+ V+  D+KRG VA +    P   R    F +Q+I++NHP  I  GY+PVL  HT+ + V+F +L+ KID R+G   E+ P+F+K GD+ +V + P KP+V+E   + P LGRFA+RDM  T+A G++ +++K
Sbjct:  219 KPLRIPIQDVYSIKGVGTVPVGRVETGKLKVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEALPGDNIGFNVRGVSKNDIKRGDVAGHPDKPPTVVRTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQVPVRFEQLLAKIDPRTGNITEENPQFIKTGDSAIVVLRPMKPVVLEPVKELPQLGRFAIRDMGMTIAAGMVISIQK 426          
The following BLAST results are available for this feature:
BLAST of CN185836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 438
Match NameE-valueIdentityDescription
EF1A_METB65.234e-5753.23Elongation factor 1-alpha OS=Methanoregula boonei ... [more]
EF1A_METM76.836e-5752.74Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_SULTO8.928e-5753.73Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]
EF1A_METS31.166e-5654.31Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]
EF1A_METPE1.166e-5652.74Elongation factor 1-alpha OS=Methanosphaerula palu... [more]
EF1A_THEVO1.523e-5653.23Elongation factor 1-alpha OS=Thermoplasma volcaniu... [more]
EF1A_IGNH41.989e-5652.53Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]
EF1AS_PORPU1.989e-5655.66Elongation factor 1-alpha S OS=Porphyra purpurea G... [more]
EF1A_PYRHO4.431e-5650.96Elongation factor 1-alpha OS=Pyrococcus horikoshii... [more]
EF1A_PYRAB7.558e-5651.44Elongation factor 1-alpha OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185836 ID=CN185836; Name=CN185836; organism=Citrus sinensis; type=EST; length=759bp
GAGGCTCTTACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATT
GGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAA
GCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTA
AGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGAC
AATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGG
TTTTGTTGCTTCCAACTCGAAGGATGATCCAGCCAGGGAAGCTGCCAACT
TCACCTCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGA
TATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTC
TGAGCTCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGG
AGCCCAAGTTCTTGAAGAATGGAGATGCTGGAATGGTTAAGATGATTCCC
ACCAAGCCCATGGTTGTTGAAACCTTCTCTGACTACCCACCTCTTGGTCG
TTTTGCCGTTAGGGACATGCGTCAGACTGTTGCTGTTGGTGTGATTAAGA
ATGTTGAAAAGAAGGATCCAACAGGTGCCAAGGTCACCAAGTCTGCAGCC
AAGAAGAAGTGAGGAGTTTTTTGGGATCTATCTGCTATAGTTAGCTTTTA
TTTTCTCTGTTTATGCTATTTTTGTCGTGTTTTAGTTTGTTTTACGGGAC
TTCATTTTA
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