CN185836

Overview
NameCN185836
Unique NameCN185836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_PROWI (Elongation factor Tu, plastid OS=Prototheca wickerhamii GN=tufA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.104e-14
Identity = 62/208 (29.81%), Postives = 100/208 (48.08%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN-----HPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 611
            KP  + ++DV+ I G GTV  GRVE GV+K G    +V  G + +TT V  +EM  + L E++ GDNVG  ++ +   +++RG V +  K        NF +QV ++N           +GY P     T+ +  K     T     +G+ +    K +  GD   +K    +P+ +E         RFA+R+  +TV  GV+  + K
Sbjct:  219 KPFLMAIEDVFSITGRGTVATGRVERGVVKIGDSVEIVGLGATKITT-VTGLEMFQKTLDESIAGDNVGILLRGIQKTEIQRGMVLAKPKS--ITPHTNFEAQVYVLNKEEGGRDTPFFSGYRPQFYVRTTDVTGKIESFCTD----AGEPI----KMVLPGDRIKMKAELIQPIAIERNM------RFAIREGGKTVGAGVVGKILK 409          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_AQUAE (Elongation factor Tu OS=Aquifex aeolicus GN=tufA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.442e-14
Identity = 58/201 (28.86%), Postives = 99/201 (49.25%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  +P++DV+ I G GTV  GRVE GVL+PG    +V      L T   S+EM  + L EALPGDN+G  ++ V   D++RG V +      A +   F +QV +++   + G  + P    +      + +++   +      +L +  + +  GD   +++    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  218 KPFLMPIEDVFSISGRGTVVTGRVERGVLRPGDEVEIVGLREEPLKTVATSIEMFRKVLDEALPGDNIGVLLRGVGKDDVERGQVLAQPGSVKAHK--RFRAQVYVLSK--EEGGRHTPFFVNYRPQFYFRTADVTGTV-----VKLPEGVEMVMPGDNVELEVELIAPVALEEGL------RFAIREGGRTVGAGVVTKI 403          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_AQUPY (Elongation factor Tu OS=Aquifex pyrophilus GN=tuf PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.883e-14
Identity = 58/201 (28.86%), Postives = 98/201 (48.76%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  +P++DV+ I G GTV  GRVE GVL+PG    +V      L T   S+EM  + L EALPGDN+G  ++ V   D++RG V +      A     F +QV +++   + G  + P    +      + +++   +      +L +  + +  GD   +++    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  218 KPFLMPIEDVFSISGRGTVVTGRVERGVLRPGDEVEIVGLREEPLKTVATSIEMFRKVLDEALPGDNIGVLLRGVGKDDVERGQVLAQPGSVKAHR--KFRAQVYVLSK--EEGGRHTPFFVNYRPQFYFRTADVTGTV-----VKLPEGVEMVMPGDNVELEVELIAPVALEEGL------RFAIREGGRTVGAGVVTKI 403          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_PARD8 (Elongation factor Tu OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 56/206 (27.18%), Postives = 99/206 (48.06%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYP---PLG-RFAVRDMRQTVAVGVIKNVE 608
            KP  +P++DV+ I G GTV  GR+ETG++K G    ++  G +G  + V  VEM  + L +   GDNVG  ++ +   ++KRG V  +      +E + F ++V I+    + G  + P  + +     ++  ++  +I    G E+                ++P   + +E    YP    +G RFA+R+  +TV  G I  +E
Sbjct:  209 KPFLMPVEDVFSITGRGTVATGRIETGIVKVGEEVQIIGLGAAGKKSVVTGVEMFRKLLDQGEAGDNVGLLLRGIDKNEIKRGMVICH--PGQVKEHSKFKAEVYILKK--EEGGRHTPFHNKYRPQFYIRTLDVTGEITLPEGTEM----------------VMPGDNVTIEVELIYPVACSVGLRFAIREGGRTVGAGQITELE 394          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_BACWK (Elongation factor Tu OS=Bacillus weihenstephanensis (strain KBAB4) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.594e-13
Identity = 56/201 (27.86%), Postives = 98/201 (48.76%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVT---FGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  +P++DV+ I G GTV  GRVE G++K G VV          TT V  VEM  + L +A  GDN+G  ++ VA +D++RG V   +K    +  A F ++V +++   + G  + P    +      + +++   I    G E+      +  GD   + +    P+ +E  +      +F++R+  +TV  GV+  +
Sbjct:  209 KPFLMPIEDVFSITGRGTVATGRVERGIVKVGDVVEIIGLAEENATTTVTGVEMFRKLLDQAQAGDNIGALLRGVAREDIQRGQVL--AKTGSVKAHAKFKAEVFVLSK--EEGGRHTPFFANYRPQFYFRTTDVTGIIQLPEGTEM------VMPGDNIEMTIELIAPIAIEEGT------KFSIREGGRTVGYGVVATI 393          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_HERAU (Elongation factor Tu OS=Herpetosiphon aurantiacus GN=tuf PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 54/201 (26.87%), Postives = 96/201 (47.76%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  +P++DV+ I G GTV  GR+E G++K G    ++  GP   TT V  VEM  + L E   GDNVG  ++ +   D++RG V   +K    +    F ++V ++    + G  ++P    +     V+ +++   I    G E+      +  GD   + +    P+ +E         +FA+R+  +TV  G++  +
Sbjct:  214 KPFLMPIEDVFSIKGRGTVVTGRIERGIVKVGDTIEIIGMGPDVRTTAVTGVEMFKKLLDEGRAGDNVGALLRGIERTDVERGQVL--AKPGSIKPHTKFKAEVYVLKK--EEGGRHSPFFSGYRPQFYVRTTDVTGAIGLPEGVEM------VMPGDNIQMTVELIVPVAIEQGL------KFAIREGGRTVGAGIVPEI 398          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_CALS8 (Elongation factor Tu OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 56/201 (27.86%), Postives = 94/201 (46.77%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  +P++DV+ I G GTV  GRVE G LK G    +V F P    T V  +EM  + L EA+ GDNVG  ++ +   +++RG V   +K    +    F +QV ++    + G  + P  + +      + +++   I    G E+         GD   + +    P+ +E+        RFA+R+  +TV  G +  +
Sbjct:  214 KPFLMPIEDVFSITGRGTVVTGRVERGTLKTGEEVEIVGFAPEPRKTVVTGIEMFRKVLDEAVAGDNVGCLLRGIQKNEVERGQVL--AKPGTIKPHTKFKAQVYVLTK--EEGGRHTPFFNGYRPQFYFRTTDVTGTITLPEGVEM------CMPGDNVEMTVELISPIAIESGL------RFAIREGGRTVGAGSVTTI 398          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_ANATD (Elongation factor Tu OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 56/201 (27.86%), Postives = 94/201 (46.77%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  +P++DV+ I G GTV  GRVE G LK G    +V F P    T V  +EM  + L EA+ GDNVG  ++ +   +++RG V   +K    +    F +QV ++    + G  + P  + +      + +++   I    G E+         GD   + +    P+ +E+        RFA+R+  +TV  G +  +
Sbjct:  214 KPFLMPIEDVFSITGRGTVVTGRVERGTLKTGEEVEIVGFAPEPRKTVVTGIEMFRKVLDEAVAGDNVGCLLRGIQKNEVERGQVL--AKPGTIKPHTKFKAQVYVLTK--EEGGRHTPFFNGYRPQFYFRTTDVTGTITLPEGVEM------CMPGDNVEMTVELISPIAIESGL------RFAIREGGRTVGAGSVTTI 398          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_FLAPJ (Elongation factor Tu OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 55/201 (27.36%), Postives = 94/201 (46.77%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  +P++DV+ I G GTV  GR+ETG+   G    ++  G   LT+ V  +EM  + L     GDN G  ++ VA +D+KRG V    K    +  A F ++V I+    + G  + P  + +     V+ +++   I   +G E+      +  GD   + +    P+ +          RFA+R+  +TV  G +  +
Sbjct:  209 KPFLMPVEDVFTITGRGTVATGRIETGICNTGDPVEIIGMGAEKLTSTVTGIEMFRQILDRGEAGDNAGILLRGVAKEDIKRGMVI--IKPGSVKPHAKFKAEVYILKK--EEGGRHTPFHNNYRPQFYVRTTDVTGVIMLPTGVEM------VMPGDNLTIDVTLLSPIAMSVGL------RFAIREGGRTVGAGQVTEI 393          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_FLAJ1 (Elongation factor Tu OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 55/201 (27.36%), Postives = 94/201 (46.77%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  +P++DV+ I G GTV  GR+ETGV   G    ++  G   LT+ +  VEM  + L     GDNVG  ++ +   D+KRG V    K    +  A F ++V I+    + G  + P  + +     V+ +++   I   +G E+      +  GD   +++    P+ +          RFA+R+  +TV  G +  +
Sbjct:  209 KPFLMPVEDVFTITGRGTVATGRIETGVANTGDPVEIIGMGAEKLTSTITGVEMFRKILDRGEAGDNVGLLLRGIDKADIKRGMVI--IKPGSVKPHAKFKAEVYILKK--EEGGRHTPFHNNYRPQFYVRTTDVTGVISLPAGVEM------VMPGDNLTIEVALLSPIAMNVGL------RFAIREGGRTVGAGQVTEI 393          
The following BLAST results are available for this feature:
BLAST of CN185836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 438
Match NameE-valueIdentityDescription
EFTU_PROWI1.104e-1429.81Elongation factor Tu, plastid OS=Prototheca wicker... [more]
EFTU_AQUAE1.442e-1428.86Elongation factor Tu OS=Aquifex aeolicus GN=tufA P... [more]
EFTU_AQUPY1.883e-1428.86Elongation factor Tu OS=Aquifex pyrophilus GN=tuf ... [more]
EFTU_PARD89.347e-1427.18Elongation factor Tu OS=Parabacteroides distasonis... [more]
EFTU_BACWK1.594e-1327.86Elongation factor Tu OS=Bacillus weihenstephanensi... [more]
EFTU_HERAU2.720e-1326.87Elongation factor Tu OS=Herpetosiphon aurantiacus ... [more]
EFTU_CALS82.720e-1327.86Elongation factor Tu OS=Caldicellulosiruptor sacch... [more]
EFTU_ANATD2.720e-1327.86Elongation factor Tu OS=Anaerocellum thermophilum ... [more]
EFTU_FLAPJ3.552e-1327.36Elongation factor Tu OS=Flavobacterium psychrophil... [more]
EFTU_FLAJ13.552e-1327.36Elongation factor Tu OS=Flavobacterium johnsoniae ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185836 ID=CN185836; Name=CN185836; organism=Citrus sinensis; type=EST; length=759bp
GAGGCTCTTACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATT
GGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAA
GCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTA
AGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGAC
AATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGG
TTTTGTTGCTTCCAACTCGAAGGATGATCCAGCCAGGGAAGCTGCCAACT
TCACCTCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGA
TATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTC
TGAGCTCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGG
AGCCCAAGTTCTTGAAGAATGGAGATGCTGGAATGGTTAAGATGATTCCC
ACCAAGCCCATGGTTGTTGAAACCTTCTCTGACTACCCACCTCTTGGTCG
TTTTGCCGTTAGGGACATGCGTCAGACTGTTGCTGTTGGTGTGATTAAGA
ATGTTGAAAAGAAGGATCCAACAGGTGCCAAGGTCACCAAGTCTGCAGCC
AAGAAGAAGTGAGGAGTTTTTTGGGATCTATCTGCTATAGTTAGCTTTTA
TTTTCTCTGTTTATGCTATTTTTGTCGTGTTTTAGTTTGTTTTACGGGAC
TTCATTTTA
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