CN185836

Overview
NameCN185836
Unique NameCN185836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 3.591e-90
Identity = 158/202 (78.22%), Postives = 183/202 (90.59%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 617
            KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF P  LTTEVKSVEMHHE+L EA+PGDNVGFN+KNV+VK+++RG+VA +SK+DP + AA+F +QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL+ KIDRRSGK+LE  PKF+K+GDA +VK+IP KPMVVE FS+YPPLGRFAVRDMRQTVAVGVIK V+ K+
Sbjct:  244 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPPNLTTEVKSVEMHHESLPEAVPGDNVGFNIKNVSVKEIRRGYVAGDSKNDPPKAAASFNAQVIILNHPGQINQGYAPVLDCHTAHIACKFNELIEKIDRRSGKKLEDNPKFVKSGDAAIVKLIPQKPMVVEPFSNYPPLGRFAVRDMRQTVAVGVIKAVDTKE 445          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 3.591e-90
Identity = 160/204 (78.43%), Postives = 184/204 (90.20%), Query Frame = 3
Query:    6 SYKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 617
            S KPLRLPLQDVYKIGGIGTVPVGRVETGV+K GMVVTF P+ +TTEVKSVEMHHE L E LPGDNVGFNVKNV+VKD++RG V S+SK+DPA+EA +FT+QVI++NHPGQIG GYAPVLDCHT+HIA KF+EL+ KIDRRSGK+LE  PKF+K+GD+ +VKMIP+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D
Sbjct:  240 SDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKAGMVVTFAPANVTTEVKSVEMHHEQLVEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 443          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A2_RABIT (Elongation factor 1-alpha 2 OS=Oryctolagus cuniculus GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 8.001e-90
Identity = 160/201 (79.60%), Postives = 179/201 (89.05%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 614
            KPLRLPLQDVYKIGGIGTVPVGRVETG+L+PGMVVTF P  +TTEVKSVEMHHEAL EALPGDNVGFNVKNV+VKD++RG V  +SK DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKNVEKK
Sbjct:  244 KPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A2_HUMAN (Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 8.001e-90
Identity = 160/201 (79.60%), Postives = 179/201 (89.05%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 614
            KPLRLPLQDVYKIGGIGTVPVGRVETG+L+PGMVVTF P  +TTEVKSVEMHHEAL EALPGDNVGFNVKNV+VKD++RG V  +SK DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKNVEKK
Sbjct:  244 KPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A2_BOVIN (Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A2 PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 8.001e-90
Identity = 160/201 (79.60%), Postives = 179/201 (89.05%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 614
            KPLRLPLQDVYKIGGIGTVPVGRVETG+L+PGMVVTF P  +TTEVKSVEMHHEAL EALPGDNVGFNVKNV+VKD++RG V  +SK DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKNVEKK
Sbjct:  244 KPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.045e-89
Identity = 161/201 (80.10%), Postives = 180/201 (89.55%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 614
            KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF P+ +TTEVKSVEMHHE+L EA PGDNVGFNVKNV+VKD++RG VA +SK+DP  EAANF +QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  244 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPANVTTEVKSVEMHHESLTEATPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPMEAANFNAQVIILNHPGQISQGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKALKSGDAAIVEMVPGKPMCVESFSTYPPLGRFAVRDMRQTVAVGVIKSVEKK 444          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A1_HORSE (Elongation factor 1-alpha 1 OS=Equus caballus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.045e-89
Identity = 163/201 (81.09%), Postives = 179/201 (89.05%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 614
            KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF P  +TTEVKSVEMHHEAL EALPGDNVGFNVKNV+VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPV DCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  244 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVPDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.365e-89
Identity = 160/201 (79.60%), Postives = 179/201 (89.05%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 614
            KPLRLPLQDVYKIGGIGTVPVGRVETG+L+PGMVVTF P  +TTEVKSVEMHHEAL EALPGDNVGFNVKNV+VKD++RG V  +SK DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKNVEKK
Sbjct:  244 KPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.365e-89
Identity = 160/201 (79.60%), Postives = 179/201 (89.05%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 614
            KPLRLPLQDVYKIGGIGTVPVGRVETG+L+PGMVVTF P  +TTEVKSVEMHHEAL EALPGDNVGFNVKNV+VKD++RG V  +SK DP +EAA FTSQVII+NHPGQI  GY+PV+DCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKNVEKK
Sbjct:  244 KPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.782e-89
Identity = 162/204 (79.41%), Postives = 184/204 (90.20%), Query Frame = 3
Query:    6 SYKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 617
            S KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG VVTF P+ LTTEVKSVEMHHEAL EA+PGDNVGFNVKNV+VKD++RG+VASN+K+DPA+EAA+FT+QVII+NHPGQIGNGYAPVLDCHT HIA KF+ + TKIDRRSGKELE EPKF+K+GDA +V M P KPM VE+F+DYPPLG  +  DMRQTVAVGVIK+V KK+
Sbjct:  230 SDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGDVVTFAPNNLTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDIRRGYVASNAKNDPAKEAADFTAQVIILNHPGQIGNGYAPVLDCHTCHIACKFATIQTKIDRRSGKELEAEPKFIKSGDAAIVLMKPQKPMCVESFTDYPPLG-VSCGDMRQTVAVGVIKSVNKKE 432          
The following BLAST results are available for this feature:
BLAST of CN185836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 438
Match NameE-valueIdentityDescription
EF1A_ORYLA3.591e-9078.22Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A_ABSGL3.591e-9078.43Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]
EF1A2_RABIT8.001e-9079.60Elongation factor 1-alpha 2 OS=Oryctolagus cunicul... [more]
EF1A2_HUMAN8.001e-9079.60Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF... [more]
EF1A2_BOVIN8.001e-9079.60Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A... [more]
EF1A_DANRE1.045e-8980.10Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]
EF1A1_HORSE1.045e-8981.09Elongation factor 1-alpha 1 OS=Equus caballus GN=E... [more]
EF1A2_RAT1.365e-8979.60Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]
EF1A2_MOUSE1.365e-8979.60Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef... [more]
EF1A_EUGGR1.782e-8979.41Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001P03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185836 ID=CN185836; Name=CN185836; organism=Citrus sinensis; type=EST; length=759bp
GAGGCTCTTACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATT
GGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAA
GCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTA
AGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGAC
AATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGG
TTTTGTTGCTTCCAACTCGAAGGATGATCCAGCCAGGGAAGCTGCCAACT
TCACCTCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGA
TATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTC
TGAGCTCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGG
AGCCCAAGTTCTTGAAGAATGGAGATGCTGGAATGGTTAAGATGATTCCC
ACCAAGCCCATGGTTGTTGAAACCTTCTCTGACTACCCACCTCTTGGTCG
TTTTGCCGTTAGGGACATGCGTCAGACTGTTGCTGTTGGTGTGATTAAGA
ATGTTGAAAAGAAGGATCCAACAGGTGCCAAGGTCACCAAGTCTGCAGCC
AAGAAGAAGTGAGGAGTTTTTTGGGATCTATCTGCTATAGTTAGCTTTTA
TTTTCTCTGTTTATGCTATTTTTGTCGTGTTTTAGTTTGTTTTACGGGAC
TTCATTTTA
back to top