CN185836

Overview
NameCN185836
Unique NameCN185836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_FRAP2 (Elongation factor Tu OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 55/201 (27.36%), Postives = 94/201 (46.77%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  LP++DV+ I G GTV  GR+E GV+  G    VV   P+  TT V  VEM  + L +   GDNVG  V+ +   D++RG V    K    +    F ++V +++   + G  + P    +      + +++   ++   G E+      +  GD   + +    P+ ++         RFA+R+  +TV  GV+  +
Sbjct:  209 KPFILPIEDVFSISGRGTVVTGRIERGVINVGDEVEVVGIRPTQKTT-VTGVEMFRKLLDKGEAGDNVGILVRGLKRDDVERGQVL--CKPGSIKPHTKFEAEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDITGAVELPEGVEM------VMPGDNIKMTITLINPIAMDEGL------RFAIREGGRTVGAGVVAKI 392          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_ENTS8 (Elongation factor Tu OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 59/204 (28.92%), Postives = 97/204 (47.55%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  LP++DV+ I G GTV  GRVE G++K G  V     G+    KS    VEM  + L E   G+NVG  ++ +  ++++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  209 KPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI--VGIKDTAKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGSIKPHTKFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMVVTLIHPIAMDDGL------RFAIREGGRTVGAGVVAKV 392          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_DESDG (Elongation factor Tu OS=Desulfovibrio desulfuricans (strain G20) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 53/200 (26.50%), Postives = 92/200 (46.00%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG--MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  +P++DV+ I G GTV  GRVE G++K G  + +      +TT    VEM  + L +   GDNVG  ++ V   D++RG V +  K     +   F ++V +++   + G  + P    +      + +++   I    G E+      +  GD     +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  212 KPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEQIEIVGIKDTMTTTCTGVEMFRKLLDQGQAGDNVGVLLRGVKRDDVERGQVLAAPKSITPHK--KFKAEVYVLSK--EEGGRHTPFFSGYRPQFYFRTTDITGIIGLEEGVEM------VMPGDNATFIVELIHPVAMEQGL------RFAIREGGRTVGAGVVSEI 395          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_DECAR (Elongation factor Tu OS=Dechloromonas aromatica (strain RCB) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 57/203 (28.08%), Postives = 99/203 (48.77%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGD--AGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            +P  +P++DV+ I G GTV  GRVE G++K G    +V   P+ + T    VEM  + L +   GDN+G  ++    +D++RG V    K    +   +FTS+V I++     G  + P  + +      + +++   I+   G E+      +  GD  A  +K+I   P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  211 QPFLMPVEDVFSISGRGTVVTGRVERGIVKVGEEIEIVGIRPT-VKTICTGVEMFRKLLDQGQAGDNIGALLRGTKREDVERGQVL--CKPGSVKPHTHFTSEVYILSK--DEGGRHTPFFNGYRPQFYFRTTDVTGSIELPEGTEM------VMPGDNIAMTIKLI--APIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_CAMJR (Elongation factor Tu OS=Campylobacter jejuni (strain RM1221) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 53/202 (26.24%), Postives = 93/202 (46.04%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFG--PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 611
            K   +P++DV+ I G GTV  GR+E GV+K G  +         TT V  VEM  + + +   GDNVG  ++    +++ RG V +  K        +F ++V I+N     G  + P  + +     V+ +++   I    G E+      +  G+   + +    P+ +E  +      RFA+R+  +TV  GV+  + K
Sbjct:  214 KDFLMPIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEAGDNVGVLLRGTKKEEVIRGMVLAKPKS--ITPHTDFEAEVYILNK--DEGGRHTPFFNNYRPQFYVRTTDVTGSIKLADGVEM------VMPGENVRITVSLIAPVALEEGT------RFAIREGGKTVGSGVVSKIIK 399          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_CAMJJ (Elongation factor Tu OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 53/202 (26.24%), Postives = 93/202 (46.04%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFG--PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 611
            K   +P++DV+ I G GTV  GR+E GV+K G  +         TT V  VEM  + + +   GDNVG  ++    +++ RG V +  K        +F ++V I+N     G  + P  + +     V+ +++   I    G E+      +  G+   + +    P+ +E  +      RFA+R+  +TV  GV+  + K
Sbjct:  214 KDFLMPIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEAGDNVGVLLRGTKKEEVIRGMVLAKPKS--ITPHTDFEAEVYILNK--DEGGRHTPFFNNYRPQFYVRTTDVTGSIKLADGVEM------VMPGENVRITVSLIAPVALEEGT------RFAIREGGKTVGSGVVSKIIK 399          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_CAMJE (Elongation factor Tu OS=Campylobacter jejuni GN=tuf PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 53/202 (26.24%), Postives = 93/202 (46.04%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFG--PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 611
            K   +P++DV+ I G GTV  GR+E GV+K G  +         TT V  VEM  + + +   GDNVG  ++    +++ RG V +  K        +F ++V I+N     G  + P  + +     V+ +++   I    G E+      +  G+   + +    P+ +E  +      RFA+R+  +TV  GV+  + K
Sbjct:  214 KDFLMPIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEAGDNVGVLLRGTKKEEVIRGMVLAKPKS--ITPHTDFEAEVYILNK--DEGGRHTPFFNNYRPQFYVRTTDVTGSIKLADGVEM------VMPGENVRITVSLIAPVALEEGT------RFAIREGGKTVGSGVVSKIIK 399          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_CAMJD (Elongation factor Tu OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 53/202 (26.24%), Postives = 93/202 (46.04%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFG--PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 611
            K   +P++DV+ I G GTV  GR+E GV+K G  +         TT V  VEM  + + +   GDNVG  ++    +++ RG V +  K        +F ++V I+N     G  + P  + +     V+ +++   I    G E+      +  G+   + +    P+ +E  +      RFA+R+  +TV  GV+  + K
Sbjct:  214 KDFLMPIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEAGDNVGVLLRGTKKEEVIRGMVLAKPKS--ITPHTDFEAEVYILNK--DEGGRHTPFFNNYRPQFYVRTTDVTGSIKLADGVEM------VMPGENVRITVSLIAPVALEEGT------RFAIREGGKTVGSGVVSKIIK 399          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_CAMJ8 (Elongation factor Tu OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 53/202 (26.24%), Postives = 93/202 (46.04%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFG--PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 611
            K   +P++DV+ I G GTV  GR+E GV+K G  +         TT V  VEM  + + +   GDNVG  ++    +++ RG V +  K        +F ++V I+N     G  + P  + +     V+ +++   I    G E+      +  G+   + +    P+ +E  +      RFA+R+  +TV  GV+  + K
Sbjct:  214 KDFLMPIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEAGDNVGVLLRGTKKEEVIRGMVLAKPKS--ITPHTDFEAEVYILNK--DEGGRHTPFFNNYRPQFYVRTTDVTGSIKLADGVEM------VMPGENVRITVSLIAPVALEEGT------RFAIREGGKTVGSGVVSKIIK 399          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_BREBN (Elongation factor Tu OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 52/202 (25.74%), Postives = 94/202 (46.53%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 608
            KP  +P++DV+ I G GTV  GRVE G++K G    ++        T V  VEM  + L +A  GDN+G  ++ V   D++RG     +K    +    F ++V +++   + G  + P    +      + +++   I    G E+      +  GD     +    P+ +E  +      RFA+R+  +TV  GV+ +++
Sbjct:  210 KPFLMPVEDVFTITGRGTVATGRVERGIVKVGDQVEIIGLAEETKNTTVTGVEMFRKLLDQAQAGDNIGALLRGVDRNDIERG--QCLAKPGSVKPYTKFKAEVYVLSK--EEGGRHTPFFANYRPQFYFRTTDVTGIIQLPEGVEM------IMPGDNTEFTVELIAPVAMEQGT------RFAIREGGRTVGAGVVASID 395          
The following BLAST results are available for this feature:
BLAST of CN185836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 438
Match NameE-valueIdentityDescription
EFTU_FRAP24.342e-1127.36Elongation factor Tu OS=Francisella philomiragia s... [more]
EFTU_ENTS84.342e-1128.92Elongation factor Tu OS=Enterobacter sakazakii (st... [more]
EFTU_DESDG4.342e-1126.50Elongation factor Tu OS=Desulfovibrio desulfurican... [more]
EFTU_DECAR4.342e-1128.08Elongation factor Tu OS=Dechloromonas aromatica (s... [more]
EFTU_CAMJR4.342e-1126.24Elongation factor Tu OS=Campylobacter jejuni (stra... [more]
EFTU_CAMJJ4.342e-1126.24Elongation factor Tu OS=Campylobacter jejuni subsp... [more]
EFTU_CAMJE4.342e-1126.24Elongation factor Tu OS=Campylobacter jejuni GN=tu... [more]
EFTU_CAMJD4.342e-1126.24Elongation factor Tu OS=Campylobacter jejuni subsp... [more]
EFTU_CAMJ84.342e-1126.24Elongation factor Tu OS=Campylobacter jejuni subsp... [more]
EFTU_BREBN4.342e-1125.74Elongation factor Tu OS=Brevibacillus brevis (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185836 ID=CN185836; Name=CN185836; organism=Citrus sinensis; type=EST; length=759bp
GAGGCTCTTACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATT
GGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAA
GCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTA
AGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGAC
AATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGG
TTTTGTTGCTTCCAACTCGAAGGATGATCCAGCCAGGGAAGCTGCCAACT
TCACCTCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGA
TATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTC
TGAGCTCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGG
AGCCCAAGTTCTTGAAGAATGGAGATGCTGGAATGGTTAAGATGATTCCC
ACCAAGCCCATGGTTGTTGAAACCTTCTCTGACTACCCACCTCTTGGTCG
TTTTGCCGTTAGGGACATGCGTCAGACTGTTGCTGTTGGTGTGATTAAGA
ATGTTGAAAAGAAGGATCCAACAGGTGCCAAGGTCACCAAGTCTGCAGCC
AAGAAGAAGTGAGGAGTTTTTTGGGATCTATCTGCTATAGTTAGCTTTTA
TTTTCTCTGTTTATGCTATTTTTGTCGTGTTTTAGTTTGTTTTACGGGAC
TTCATTTTA
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