CN185836

Overview
NameCN185836
Unique NameCN185836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTUB_NICSY (Elongation factor TuB, chloroplastic OS=Nicotiana sylvestris GN=TUFB PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 57/201 (28.36%), Postives = 94/201 (46.77%), Query Frame = 3
Query:   15 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            P  + ++DV+ I G GTV  GRVE G +K G +V     GL     T V  VEM  + L EA+ GDNVG  ++ +   D++RG V   +K         F + V ++    + G  ++P    +     ++ +++  K+      + E E K +  GD   + +    P+  E         RFA+R+  +TV  GVI+ +
Sbjct:  296 PFLMAIEDVFSITGRGTVATGRVERGTVKVGEIVDI--VGLKDTRNTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKIDIQRGMVL--AKPGTITPHTKFEALVYVLKK--EEGGRHSPFFAGYRPQFYMRTTDVTGKVTVIMSDKGE-ESKMVMPGDRVNMVVELIMPVACEQGM------RFAIREGGKTVGAGVIQKI 483          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_THICR (Elongation factor Tu OS=Thiomicrospira crunogena (strain XCL-2) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 53/201 (26.37%), Postives = 94/201 (46.77%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  +P++D++ I G GTV  GRVETGV+K G    +V   P+  TT V  VEM  + L +   GDNVG  ++    +D++RG V ++           F ++V +++     G  + P    +      + +++    +  +G E+      +  GD   + +    P+ +          RFA+R+  +TV  GV+  +
Sbjct:  211 KPFLMPVEDIFSIQGRGTVATGRVETGVVKVGEEIEIVGIRPT-TTTTVTGVEMFRKLLDQGEAGDNVGILLRGTKREDIERGQVLAHK--GTVTPHTKFEAEVYVLSK--DEGGRHTPFFQGYRPQFYFRTTDVTGACELPAGTEM------VMPGDNVQMTVELINPIAMNEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_RALME (Elongation factor Tu OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 54/197 (27.41%), Postives = 94/197 (47.72%), Query Frame = 3
Query:   24 LPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            +P++DV+ I G GTV  GR+E GV+K G    +V   P+  TT    VEM  + L +   GDNVG  ++    +D++RG V    K    +   +FT +V I++     G  + P  + +      + +++   I      EL ++ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  215 MPVEDVFSISGRGTVVTGRIERGVIKVGEEIEIVGIRPTVKTT-CTGVEMFRKLLDQGQAGDNVGLLLRGTKREDVERGQVL--CKPGSIKPHTHFTGEVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPQDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_ODOSI (Elongation factor Tu, chloroplastic OS=Odontella sinensis GN=tufA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 53/205 (25.85%), Postives = 90/205 (43.90%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG--LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLG-----RFAVRDMRQTVAVGVIKNV 605
            K   + ++DV+ I G GTV  GR+E GV+K G  V     G   TT +  +EM  + L E   GDNVG  ++ V  +D++ G V   S+        NF S+V ++      G  + P    +     V+ +++   I + +              D  +V+M+     +  T     P+      RFA+R+  +T+  GV+  +
Sbjct:  219 KTFLMAIEDVFSITGRGTVATGRIERGVVKVGDTVEIVGVGDTQTTTITGIEMFQKTLDEGFAGDNVGILLRGVTREDIEAGMVL--SEPGTITPHTNFESEVYVLTK--DEGGRHTPFFTGYRPQFYVRTTDVTGAITQFTA------------DDGSIVEMVMPGDRIKMTAELIYPVAIEEGMRFAIREGGRTIGAGVVSKI 407          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_NITSB (Elongation factor Tu OS=Nitratiruptor sp. (strain SB155-2) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 53/201 (26.37%), Postives = 94/201 (46.77%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  +P++DV+ I G GTV  GR+E GV+K G    +V   P+  TT V  VEM  + L +   GDNVG  ++    ++++RG V   ++         F +++ ++    + G  + P    +     V+ +++   I    G E+      +  GD   +      P+ +E  +      RFA+R+  +TV  GV+  +
Sbjct:  214 KPFLMPIEDVFSISGRGTVVTGRIERGVVKVGDEIEIVGLRPTQKTT-VTGVEMFRKELDQGEAGDNVGVLLRGTKKEEVERGQVL--AQPGTITPHTKFEAEIYVLTK--EEGGRHTPFFSGYRPQFYVRTTDVTGTITLPEGVEM------VMPGDNVKINAELIAPIALEEGT------RFAIREGGRTVGAGVVSKI 397          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_HAEDU (Elongation factor Tu OS=Haemophilus ducreyi GN=tufA PE=3 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 55/202 (27.23%), Postives = 95/202 (47.03%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 611
            KP  LP++DV+ I G GTV  GRVE G++K G  V       TT+  V  VEM  + L E   G+NVG  ++    ++++RG V   +K        +F S+V +++   + G  + P    +      + +++   I+   G E+      +  GD   + +    P+ ++         RFA+R+  +TV  GV+  + K
Sbjct:  209 KPFLLPIEDVFSISGRGTVVTGRVERGIIKSGEEVEIVGIKETTKTTVTGVEMFRKLLDEGRAGENVGALLRGTKREEIERGQVL--AKPGTITPHTDFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGDNIKMTVSLIHPIAMDEGL------RFAIREGGRTVGAGVVAKIIK 394          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_FRATW (Elongation factor Tu OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 55/201 (27.36%), Postives = 93/201 (46.27%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  LP++DV+ I G GTV  GR+E GV+  G    VV   P+  TT V  VEM  + L     GDNVG  V+ +   D++RG V    K    +    F ++V +++   + G  + P    +      + +++   ++   G E+      +  GD   + +    P+ ++         RFA+R+  +TV  GV+  +
Sbjct:  209 KPFILPIEDVFSISGRGTVVTGRIERGVVNVGDEVEVVGIRPTQKTT-VTGVEMFRKLLDRGEAGDNVGILVRGLKRDDVERGQVL--CKPGSIKPHTKFEAEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDITGAVELPEGVEM------VMPGDNVKMTITLINPIAMDEGL------RFAIREGGRTVGAGVVAKI 392          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_FRATO (Elongation factor Tu OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 55/201 (27.36%), Postives = 93/201 (46.27%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  LP++DV+ I G GTV  GR+E GV+  G    VV   P+  TT V  VEM  + L     GDNVG  V+ +   D++RG V    K    +    F ++V +++   + G  + P    +      + +++   ++   G E+      +  GD   + +    P+ ++         RFA+R+  +TV  GV+  +
Sbjct:  209 KPFILPIEDVFSISGRGTVVTGRIERGVVNVGDEVEVVGIRPTQKTT-VTGVEMFRKLLDRGEAGDNVGILVRGLKRDDVERGQVL--CKPGSIKPHTKFEAEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDITGAVELPEGVEM------VMPGDNVKMTITLINPIAMDEGL------RFAIREGGRTVGAGVVAKI 392          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_FRATN (Elongation factor Tu OS=Francisella tularensis subsp. novicida (strain U112) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 55/201 (27.36%), Postives = 93/201 (46.27%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  LP++DV+ I G GTV  GR+E GV+  G    VV   P+  TT V  VEM  + L     GDNVG  V+ +   D++RG V    K    +    F ++V +++   + G  + P    +      + +++   ++   G E+      +  GD   + +    P+ ++         RFA+R+  +TV  GV+  +
Sbjct:  209 KPFILPIEDVFSISGRGTVVTGRIERGVVNVGDEVEVVGIRPTQKTT-VTGVEMFRKLLDRGEAGDNVGILVRGLKRDDVERGQVL--CKPGSIKPHTKFEAEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDITGAVELPEGVEM------VMPGDNVKMTITLINPIAMDEGL------RFAIREGGRTVGAGVVAKI 392          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_FRATM (Elongation factor Tu OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 55/201 (27.36%), Postives = 93/201 (46.27%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  LP++DV+ I G GTV  GR+E GV+  G    VV   P+  TT V  VEM  + L     GDNVG  V+ +   D++RG V    K    +    F ++V +++   + G  + P    +      + +++   ++   G E+      +  GD   + +    P+ ++         RFA+R+  +TV  GV+  +
Sbjct:  209 KPFILPIEDVFSISGRGTVVTGRIERGVVNVGDEVEVVGIRPTQKTT-VTGVEMFRKLLDRGEAGDNVGILVRGLKRDDVERGQVL--CKPGSIKPHTKFEAEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDITGAVELPEGVEM------VMPGDNVKMTITLINPIAMDEGL------RFAIREGGRTVGAGVVAKI 392          
The following BLAST results are available for this feature:
BLAST of CN185836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 438
Match NameE-valueIdentityDescription
EFTUB_NICSY4.342e-1128.36Elongation factor TuB, chloroplastic OS=Nicotiana ... [more]
EFTU_THICR5.671e-1126.37Elongation factor Tu OS=Thiomicrospira crunogena (... [more]
EFTU_RALME5.671e-1127.41Elongation factor Tu OS=Ralstonia metallidurans (s... [more]
EFTU_ODOSI5.671e-1125.85Elongation factor Tu, chloroplastic OS=Odontella s... [more]
EFTU_NITSB5.671e-1126.37Elongation factor Tu OS=Nitratiruptor sp. (strain ... [more]
EFTU_HAEDU5.671e-1127.23Elongation factor Tu OS=Haemophilus ducreyi GN=tuf... [more]
EFTU_FRATW5.671e-1127.36Elongation factor Tu OS=Francisella tularensis sub... [more]
EFTU_FRATO5.671e-1127.36Elongation factor Tu OS=Francisella tularensis sub... [more]
EFTU_FRATN5.671e-1127.36Elongation factor Tu OS=Francisella tularensis sub... [more]
EFTU_FRATM5.671e-1127.36Elongation factor Tu OS=Francisella tularensis sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185836 ID=CN185836; Name=CN185836; organism=Citrus sinensis; type=EST; length=759bp
GAGGCTCTTACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATT
GGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAA
GCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTA
AGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGAC
AATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGG
TTTTGTTGCTTCCAACTCGAAGGATGATCCAGCCAGGGAAGCTGCCAACT
TCACCTCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGA
TATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTC
TGAGCTCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGG
AGCCCAAGTTCTTGAAGAATGGAGATGCTGGAATGGTTAAGATGATTCCC
ACCAAGCCCATGGTTGTTGAAACCTTCTCTGACTACCCACCTCTTGGTCG
TTTTGCCGTTAGGGACATGCGTCAGACTGTTGCTGTTGGTGTGATTAAGA
ATGTTGAAAAGAAGGATCCAACAGGTGCCAAGGTCACCAAGTCTGCAGCC
AAGAAGAAGTGAGGAGTTTTTTGGGATCTATCTGCTATAGTTAGCTTTTA
TTTTCTCTGTTTATGCTATTTTTGTCGTGTTTTAGTTTGTTTTACGGGAC
TTCATTTTA
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