CN185836

Overview
NameCN185836
Unique NameCN185836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_SALAR (Elongation factor Tu OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 59/204 (28.92%), Postives = 97/204 (47.55%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  LP++DV+ I G GTV  GRVE G++K G  V     G+    KS    VEM  + L E   G+NVG  ++ +  ++++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  209 KPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI--VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMVVTLIHPIAMDDGL------RFAIREGGRTVGAGVVAKV 392          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_RALSO (Elongation factor Tu OS=Ralstonia solanacearum GN=tufA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 52/196 (26.53%), Postives = 91/196 (46.43%), Query Frame = 3
Query:   24 LPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            +P++DV+ I G GTV  GR+E G++K G  +       T  T    VEM  + L +   GDNVG  ++    +D++RG V    K    +   +FT +V I++     G  + P  + +      + +++   I      EL K+ + +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  215 MPVEDVFSISGRGTVVTGRIERGIIKVGEEIEIVGIKATQKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVL--CKPGSIKPHTHFTGEVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSI------ELPKDKEMVMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_RALEJ (Elongation factor Tu OS=Ralstonia eutropha (strain JMP134) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 54/197 (27.41%), Postives = 94/197 (47.72%), Query Frame = 3
Query:   24 LPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            +P++DV+ I G GTV  GR+E GV+K G    +V   P+  TT    VEM  + L +   GDNVG  ++    +D++RG V    K    +   +FT +V I++     G  + P  + +      + +++   I+  + KE+      +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  215 MPVEDVFSISGRGTVVTGRIERGVIKVGEEIEIVGIRPTVKTT-CTGVEMFRKLLDQGQAGDNVGLLLRGTKREDVERGQVL--CKPGSIKPHTHFTGEVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSIELPADKEM------VMPGDNVSITVKLIAPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_POLSJ (Elongation factor Tu OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 52/196 (26.53%), Postives = 91/196 (46.43%), Query Frame = 3
Query:   24 LPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            +P++DV+ I G GTV  GRVE GV+K G  +       T  T    VEM  + L +   GDNVG  ++    +D++RG V    K    +   +FT ++ +++     G  + P  + +      + +++   I+   GKE+      +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  215 MPVEDVFSISGRGTVVTGRVERGVIKVGEEIEIVGIADTQKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVQRGQVL--CKPGSIKPHTHFTGEIYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGAIELPEGKEM------VMPGDNVSITVKLINPIAMEEGL------RFAIREGGKTVGAGVVAKI 394          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_LAWIP (Elongation factor Tu OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=tuf PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 56/202 (27.72%), Postives = 96/202 (47.52%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKD-DPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  +P++DV+ I G GTV  GRVE GV+K G    +V   P+ + T    VEM  + L +   GDN+G  +++V   +++RG V S  K   P R+   F ++V +++   + G  + P    +      + +++   I    G E+      +  GD     +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  212 KPFLMPIEDVFSISGRGTVVTGRVERGVIKVGEEIEIVGIKPT-IKTTCTGVEMFRKLLDQGEAGDNIGVLLRSVKRDEVERGQVLSALKSITPHRK---FKAEVYVLSK--EEGGRHTPFFSGYRPQFYCRTTDVTGVITLNEGVEM------VMPGDNATFNVELIYPIAMEQGL------RFAIREGGRTVGAGVVTEI 395          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_HELSJ (Elongation factor Tu, plastid OS=Helicosporidium sp. subsp. Simulium jonesii GN=tufA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 55/207 (26.57%), Postives = 93/207 (44.93%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG--MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKD-DPAREAANFTSQVIIM-----NHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEP-KFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  + ++DV+ I G GTV  GR+E G +K G  + +  G    TT V  +EM  + L + + GDNVG  ++ +  K++ RG V +  K  DP     +F +QV ++             GY P     T+ +      +++          +  P K    GD   + +   +P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  219 KPFLMAIEDVFSISGRGTVATGRIERGKIKMGDSIEIIGGSLRKTTTVTGIEMFQKTLTDGVAGDNVGILMRGIQKKEIDRGMVLTKPKSIDP---LTSFEAQVYLLTKEEGGRSKGFTIGYRPQFYVRTTDVTGAILNMLSD---------DNTPLKIASPGDRITMSVKLIQPIALEKNM------RFAIREGGKTVGAGVVSKL 407          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_FRATT (Elongation factor Tu OS=Francisella tularensis subsp. tularensis GN=tuf PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 55/201 (27.36%), Postives = 93/201 (46.27%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  LP++DV+ I G GTV  GR+E GV+  G    VV   P+  TT V  VEM  + L     GDNVG  V+ +   D++RG V    K    +    F ++V +++   + G  + P    +      + +++   ++   G E+      +  GD   + +    P+ ++         RFA+R+  +TV  GV+  +
Sbjct:  209 KPFILPIEDVFSISGRGTVVTGRIERGVVNIGDEVEVVGIRPTQKTT-VTGVEMFRKLLDRGEAGDNVGILVRGLKRDDVERGQVL--CKPGSIKPHTKFEAEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDITGAVELPEGVEM------VMPGDNVKMTITLINPIAMDEGL------RFAIREGGRTVGAGVVAKI 392          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_FRAT1 (Elongation factor Tu OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=tuf PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 55/201 (27.36%), Postives = 93/201 (46.27%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  LP++DV+ I G GTV  GR+E GV+  G    VV   P+  TT V  VEM  + L     GDNVG  V+ +   D++RG V    K    +    F ++V +++   + G  + P    +      + +++   ++   G E+      +  GD   + +    P+ ++         RFA+R+  +TV  GV+  +
Sbjct:  209 KPFILPIEDVFSISGRGTVVTGRIERGVVNIGDEVEVVGIRPTQKTT-VTGVEMFRKLLDRGEAGDNVGILVRGLKRDDVERGQVL--CKPGSIKPHTKFEAEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDITGAVELPEGVEM------VMPGDNVKMTITLINPIAMDEGL------RFAIREGGRTVGAGVVAKI 392          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_ECOLI (Elongation factor Tu OS=Escherichia coli (strain K12) GN=tufA PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 59/204 (28.92%), Postives = 97/204 (47.55%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  LP++DV+ I G GTV  GRVE G++K G  V     G+    KS    VEM  + L E   G+NVG  ++ +  ++++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  209 KPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI--VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMVVTLIHPIAMDDGL------RFAIREGGRTVGAGVVAKV 392          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU_ECOL6 (Elongation factor Tu OS=Escherichia coli O6 GN=tufA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 59/204 (28.92%), Postives = 97/204 (47.55%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KP  LP++DV+ I G GTV  GRVE G++K G  V     G+    KS    VEM  + L E   G+NVG  ++ +  ++++RG V   +K    +    F S+V I++     G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++         RFA+R+  +TV  GV+  V
Sbjct:  209 KPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI--VGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGTIKPHTKFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMVVTLIHPIAMDDGL------RFAIREGGRTVGAGVVAKV 392          
The following BLAST results are available for this feature:
BLAST of CN185836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 438
Match NameE-valueIdentityDescription
EFTU_SALAR7.406e-1128.92Elongation factor Tu OS=Salmonella arizonae (strai... [more]
EFTU_RALSO7.406e-1126.53Elongation factor Tu OS=Ralstonia solanacearum GN=... [more]
EFTU_RALEJ7.406e-1127.41Elongation factor Tu OS=Ralstonia eutropha (strain... [more]
EFTU_POLSJ7.406e-1126.53Elongation factor Tu OS=Polaromonas sp. (strain JS... [more]
EFTU_LAWIP7.406e-1127.72Elongation factor Tu OS=Lawsonia intracellularis (... [more]
EFTU_HELSJ7.406e-1126.57Elongation factor Tu, plastid OS=Helicosporidium s... [more]
EFTU_FRATT7.406e-1127.36Elongation factor Tu OS=Francisella tularensis sub... [more]
EFTU_FRAT17.406e-1127.36Elongation factor Tu OS=Francisella tularensis sub... [more]
EFTU_ECOLI7.406e-1128.92Elongation factor Tu OS=Escherichia coli (strain K... [more]
EFTU_ECOL67.406e-1128.92Elongation factor Tu OS=Escherichia coli O6 GN=tuf... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185836 ID=CN185836; Name=CN185836; organism=Citrus sinensis; type=EST; length=759bp
GAGGCTCTTACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATT
GGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAA
GCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTA
AGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGAC
AATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGG
TTTTGTTGCTTCCAACTCGAAGGATGATCCAGCCAGGGAAGCTGCCAACT
TCACCTCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGA
TATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTC
TGAGCTCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGG
AGCCCAAGTTCTTGAAGAATGGAGATGCTGGAATGGTTAAGATGATTCCC
ACCAAGCCCATGGTTGTTGAAACCTTCTCTGACTACCCACCTCTTGGTCG
TTTTGCCGTTAGGGACATGCGTCAGACTGTTGCTGTTGGTGTGATTAAGA
ATGTTGAAAAGAAGGATCCAACAGGTGCCAAGGTCACCAAGTCTGCAGCC
AAGAAGAAGTGAGGAGTTTTTTGGGATCTATCTGCTATAGTTAGCTTTTA
TTTTCTCTGTTTATGCTATTTTTGTCGTGTTTTAGTTTGTTTTACGGGAC
TTCATTTTA
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