CN185836

Overview
NameCN185836
Unique NameCN185836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU2_PSYWF (Elongation factor Tu 2 OS=Psychrobacter sp. (strain PRwf-1) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 54/202 (26.73%), Postives = 97/202 (48.02%), Query Frame = 3 
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 608
            KP  +P++DV+ I G GTV  GRVE+G++K G    +V    +  TT    VEM  + L E   G+N G  ++    +D++RG V   +K         F ++V +++   + G  + P L+ +      + +++   I  + G E+      +  GD   + +    P+ ++         RFA+R+  +TV  GV+ NV+
Sbjct:  211 KPFLMPIEDVFSISGRGTVVTGRVESGIVKVGDEIEIVGIRDTQKTT-CTGVEMFRKLLDEGRAGENCGVLLRGTKREDVQRGQVL--AKPGSITPHTKFDAEVYVLSK--EEGGRHTPFLNGYRPQFYFRTTDVTGAISLQEGTEM------VMPGDNVEMSVELIHPIAMDKGL------RFAIREGGRTVGAGVVANVK 395
[Close]
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU2_CARHZ (Elongation factor Tu 2 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 54/203 (26.60%), Postives = 96/203 (47.29%), Query Frame = 3 
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 611
            KP  +P++DV+ I G GTV  GRVE G +  G    +V    +   T V  +EM  + L EA+ GDN+G  ++ V  K+++RG V   +K    +    F ++V ++    + G  + P  + +      + +++   I    G E+      +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +E+
Sbjct:  214 KPFLMPVEDVFTITGRGTVATGRVERGRITIGEEVEIVGLMDAPRKTVVTGLEMFRKVLDEAVAGDNIGALLRGVDRKEIERGQVL--AKPGTIKPHRKFFAEVYVLTK--EEGGRHTPFFNGYRPQFYFRTTDVTGVIHLPEGVEM------VMPGDNVKIHIELITPIAIEEGL------RFAIREGGRTVGAGVVTAIEE 400
[Close]
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU2_ACISJ (Elongation factor Tu 2 OS=Acidovorax sp. (strain JS42) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 52/196 (26.53%), Postives = 93/196 (47.45%), Query Frame = 3 
Query:   24 LPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            +P++DV+ I G GTV  GRVE G++K G  +       T  T V  VEM  + L +   GDNVG  ++    +D++RG V    K    +   +FT++V +++     G  + P  + +      + +++   I+  + KE+      +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  215 MPVEDVFSISGRGTVVTGRVERGIIKVGEEIEIVGIRDTQKTTVTGVEMFRKLLDQGQAGDNVGLLLRGTKREDVERGQVL--CKPGSIKPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSIELPADKEM------VMPGDNVSITVKLINPIAMEEGL------RFAIREGGRTVGAGVVAKI 394
[Close]
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU1_STRCU (Elongation factor Tu-1 OS=Streptomyces collinus GN=tuf1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 52/203 (25.62%), Postives = 92/203 (45.32%), Query Frame = 3 
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---VVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 611
            KP  +P++DV+ I G GTV  GR+E GVLK      ++       TT V  +EM  + L E   G+NVG  ++ +  +D++RG V    K         F +Q  I++     G  + P  + +      + +++   +    G E+      +  GD   +K+   +P+ +E         +FA+R+  +TV  G +  + K
Sbjct:  211 KPFLMPIEDVFTITGRGTVVTGRIERGVLKVNETVDIIGIKTEKTTTTVTGIEMFRKLLDEGQAGENVGLLLRGIKREDVERGQVI--IKPGSVTPHTEFEAQAYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTEMKVELIQPVAMEEGL------KFAIREGGRTVGAGQVTKINK 397
[Close]
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU1_STRCO (Elongation factor Tu-1 OS=Streptomyces coelicolor GN=tuf1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 52/203 (25.62%), Postives = 92/203 (45.32%), Query Frame = 3 
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---VVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 611
            KP  +P++DV+ I G GTV  GR+E GVLK      ++       TT V  +EM  + L E   G+NVG  ++ +  +D++RG V    K         F +Q  I++     G  + P  + +      + +++   +    G E+      +  GD   +K+   +P+ +E         +FA+R+  +TV  G +  + K
Sbjct:  211 KPFLMPIEDVFTITGRGTVVTGRIERGVLKVNETVDIIGIKTEKTTTTVTGIEMFRKLLDEGQAGENVGLLLRGIKREDVERGQVI--IKPGSVTPHTEFEAQAYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTEMKVELIQPVAMEEGL------KFAIREGGRTVGAGQVTKINK 397
[Close]
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU1_PSYWF (Elongation factor Tu 1 OS=Psychrobacter sp. (strain PRwf-1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 54/202 (26.73%), Postives = 97/202 (48.02%), Query Frame = 3 
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 608
            KP  +P++DV+ I G GTV  GRVE+G++K G    +V    +  TT    VEM  + L E   G+N G  ++    +D++RG V   +K         F ++V +++   + G  + P L+ +      + +++   I  + G E+      +  GD   + +    P+ ++         RFA+R+  +TV  GV+ NV+
Sbjct:  211 KPFLMPIEDVFSISGRGTVVTGRVESGIVKVGDEIEIVGIRDTQKTT-CTGVEMFRKLLDEGRAGENCGVLLRGTKREDVQRGQVL--AKPGSITPHTKFDAEVYVLSK--EEGGRHTPFLNGYRPQFYFRTTDVTGAISLQEGTEM------VMPGDNVEMSVELIHPIAMDKGL------RFAIREGGRTVGAGVVANVK 395
[Close]
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU1_CARHZ (Elongation factor Tu 1 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 54/203 (26.60%), Postives = 96/203 (47.29%), Query Frame = 3 
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 611
            KP  +P++DV+ I G GTV  GRVE G +  G    +V    +   T V  +EM  + L EA+ GDN+G  ++ V  K+++RG V   +K    +    F ++V ++    + G  + P  + +      + +++   I    G E+      +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +E+
Sbjct:  214 KPFLMPVEDVFTITGRGTVATGRVERGRITIGEEVEIVGLMDAPRKTVVTGLEMFRKVLDEAVAGDNIGALLRGVDRKEIERGQVL--AKPGTIKPHRKFFAEVYVLTK--EEGGRHTPFFNGYRPQFYFRTTDVTGVIHLPEGVEM------VMPGDNVKIHIELITPIAIEEGL------RFAIREGGRTVGAGVVTAIEE 400
[Close]
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EFTU1_ACISJ (Elongation factor Tu 1 OS=Acidovorax sp. (strain JS42) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 52/196 (26.53%), Postives = 93/196 (47.45%), Query Frame = 3 
Query:   24 LPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            +P++DV+ I G GTV  GRVE G++K G  +       T  T V  VEM  + L +   GDNVG  ++    +D++RG V    K    +   +FT++V +++     G  + P  + +      + +++   I+  + KE+      +  GD   + +    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  215 MPVEDVFSISGRGTVVTGRVERGIIKVGEEIEIVGIRDTQKTTVTGVEMFRKLLDQGQAGDNVGLLLRGTKREDVERGQVL--CKPGSIKPHTHFTAEVYVLSK--DEGGRHTPFFNNYRPQFYFRTTDVTGSIELPADKEM------VMPGDNVSITVKLINPIAMEEGL------RFAIREGGRTVGAGVVAKI 394
The following BLAST results are available for this feature:
BLAST of CN185836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 438
Match NameE-valueIdentityDescription
EFTU2_PSYWF9.673e-1126.73Elongation factor Tu 2 OS=Psychrobacter sp. (strai... [more]
EFTU2_CARHZ9.673e-1126.60Elongation factor Tu 2 OS=Carboxydothermus hydroge... [more]
EFTU2_ACISJ9.673e-1126.53Elongation factor Tu 2 OS=Acidovorax sp. (strain J... [more]
EFTU1_STRCU9.673e-1125.62Elongation factor Tu-1 OS=Streptomyces collinus GN... [more]
EFTU1_STRCO9.673e-1125.62Elongation factor Tu-1 OS=Streptomyces coelicolor ... [more]
EFTU1_PSYWF9.673e-1126.73Elongation factor Tu 1 OS=Psychrobacter sp. (strai... [more]
EFTU1_CARHZ9.673e-1126.60Elongation factor Tu 1 OS=Carboxydothermus hydroge... [more]
EFTU1_ACISJ9.673e-1126.53Elongation factor Tu 1 OS=Acidovorax sp. (strain J... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185836 ID=CN185836; Name=CN185836; organism=Citrus sinensis; type=EST; length=759bp
GAGGCTCTTACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATT
GGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAA
GCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTA
AGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGAC
AATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGG
TTTTGTTGCTTCCAACTCGAAGGATGATCCAGCCAGGGAAGCTGCCAACT
TCACCTCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGA
TATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTC
TGAGCTCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGG
AGCCCAAGTTCTTGAAGAATGGAGATGCTGGAATGGTTAAGATGATTCCC
ACCAAGCCCATGGTTGTTGAAACCTTCTCTGACTACCCACCTCTTGGTCG
TTTTGCCGTTAGGGACATGCGTCAGACTGTTGCTGTTGGTGTGATTAAGA
ATGTTGAAAAGAAGGATCCAACAGGTGCCAAGGTCACCAAGTCTGCAGCC
AAGAAGAAGTGAGGAGTTTTTTGGGATCTATCTGCTATAGTTAGCTTTTA
TTTTCTCTGTTTATGCTATTTTTGTCGTGTTTTAGTTTGTTTTACGGGAC
TTCATTTTA
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