CN185836

Overview
NameCN185836
Unique NameCN185836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:304..1062. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 5.554e-83
Identity = 147/202 (72.77%), Postives = 171/202 (84.65%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 617
            KPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGM + F P+ +  E KSVEMHHE L EA+PGDNVGFN+K V+VKD++RG VAS++K+DPA+EAA F SQVIIMNHPGQI  GY PVLDCHT+HIA KF  +  KIDRR+GK  E+ PKF+KNGDA +V +IPTK + VE F +YPPLGR+AVRDM+QTVAVGVIK VEKKD
Sbjct:  233 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMSIQFAPNKVIAECKSVEMHHEQLPEAVPGDNVGFNIKGVSVKDIRRGNVASDAKNDPAKEAATFYSQVIIMNHPGQIQAGYTPVLDCHTAHIACKFETIHDKIDRRTGKSQEENPKFIKNGDAALVTLIPTKALCVEVFQEYPPLGRYAVRDMKQTVAVGVIKKVEKKD 434          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 306.22 bits (783), Expect = 1.237e-82
Identity = 147/206 (71.36%), Postives = 176/206 (85.44%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKE---PKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 620
            KPLR+PLQDVYKIGGIGTVPVGRVETG++KPGMVVTF P+GL+TEVKSVEMHHE L EA PGDNVGFNVKNV+VK++KRG VA +SK+DP +E   F +QVI++NHPGQI  GY+PVLDCHT+HIA KF+E+V K+DRR+G  + KE      LKNGDA MV++ P++PM VE+F++YPPLGRFAVRDMRQTVAVGVIK+  KK P
Sbjct:  232 KPLRIPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLSTEVKSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAP 437          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.787e-81
Identity = 142/201 (70.65%), Postives = 170/201 (84.58%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 614
            KPLRLPLQDVYKIGGIGTVPVGRVETGVLK GMV+TF P G + E KSVEMHHE + EA PG+NVGFNVK ++VKD+KRGFVAS+SK+DPA +  +F S  I+MNHPG+I  GY PV+DCHT+HIA KF EL+TK D+RSGK  E+ PKFLK GDAG++++ P+KP+ VETF+ Y PLGRFAVRDMRQTVAVGVI+ ++KK
Sbjct:  232 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKAGMVITFAPKGCSAECKSVEMHHEEVPEAAPGNNVGFNVKGLSVKDIKRGFVASDSKNDPATDTESFVSHTIVMNHPGEIKAGYTPVIDCHTAHIACKFEELLTKADKRSGKMTEENPKFLKAGDAGLIRLSPSKPLCVETFATYAPLGRFAVRDMRQTVAVGVIQEIKKK 432          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.333e-81
Identity = 143/200 (71.50%), Postives = 172/200 (86.00%), Query Frame = 3
Query:   18 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 617
            LRLPL DVYKIGGIGTVPVGR+ETG+LKPG VV F P+ +TTEVKSVEMHHEAL EA+PGDNVGFNVKNV+VK+L+RG+VA +SK +P + A NFT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRRSGK  E  PK +K+GDA +V + P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIK+V  KD
Sbjct:  195 LRLPLPDVYKIGGIGTVPVGRLETGILKPGTVVVFAPANITTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKELRRGYVAGDSKANPPKGAENFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKXKVDRRSGKSTEDNPKAIKSGDAAIVILQPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVVFKD 394          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 9.803e-80
Identity = 139/199 (69.85%), Postives = 172/199 (86.43%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELE-KEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 605
            KPLRLPLQDVYKI GIGTVPVGRVETG+LKPG +V F PSG+++E KS+EMHH AL +A+PGDNVGFNV+N+ VKD+KRG VAS++K+ PA    +FT+QVI+MNHPGQI  GY PVLDCHTSHIA KF EL++KIDRR+GK +E  EP+++KNGD+ +VK++PTKP+ VE F+ +PPLGRFAVRDM+QTVAVGV+K V
Sbjct:  230 KPLRLPLQDVYKISGIGTVPVGRVETGILKPGTIVQFAPSGVSSECKSIEMHHTALAQAIPGDNVGFNVRNLTVKDIKRGNVASDAKNQPAVGCEDFTAQVIVMNHPGQIRKGYTPVLDCHTSHIACKFEELLSKIDRRTGKSMEGGEPEYIKNGDSALVKIVPTKPLCVEEFAKFPPLGRFAVRDMKQTVAVGVVKAV 428          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A1_XENLA (Elongation factor 1-alpha OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 293.893 bits (751), Expect = 6.354e-79
Identity = 138/201 (68.66%), Postives = 166/201 (82.59%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 614
            KPLRLPLQDVYKIGGIGTVPVG++ETG+LKPGM ++F PSG + EVKS+EMHHE LQ A PG N+GFNVKN+AVK LKRG VA NSK DP  EA++FT+QVII+NHPG I  GY+PV+DCHT+HI  +F+EL  KIDRR+GK+LE  P  LK+GDA ++ + P KP  VE F DYPPLGRFA RD++QTVAVGV+K+VE K
Sbjct:  247 KPLRLPLQDVYKIGGIGTVPVGKIETGILKPGMTISFAPSGFSAEVKSIEMHHEPLQMAFPGFNIGFNVKNIAVKSLKRGNVAGNSKSDPPTEASSFTAQVIILNHPGFIKAGYSPVIDCHTAHITCQFAELQEKIDRRTGKKLEDNPGLLKSGDAAIITLKPIKPFCVERFFDYPPLGRFAARDLKQTVAVGVVKSVEHK 447          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.084e-78
Identity = 133/202 (65.84%), Postives = 174/202 (86.14%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 617
            KPLR+PLQ VYKIGGIGTVPVGRVETG+LK GMV+ F PS + +E KSVEMH E L+EA PGDN+GFNVKNV+VK++KRG+VAS++K++PA+  + FT+QVII+NHPG+I NGY P+LDCHTSHI+ KF  + +KID+RSGK +E+ PK +K+GD+ +V + P KPMVVETF++YPPLGRFA+RDMRQT+AVG+I  +++K+
Sbjct:  230 KPLRIPLQGVYKIGGIGTVPVGRVETGILKAGMVLNFAPSAVVSECKSVEMHKEVLEEARPGDNIGFNVKNVSVKEIKRGYVASDTKNEPAKGCSKFTAQVIILNHPGEIKNGYTPLLDCHTSHISCKFLNIDSKIDKRSGKVVEENPKAIKSGDSALVSLEPKKPMVVETFTEYPPLGRFAIRDMRQTIAVGIINQLKRKN 431          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.565e-77
Identity = 131/184 (71.20%), Postives = 163/184 (88.59%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 563
            KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  230 KPLRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.325e-76
Identity = 130/184 (70.65%), Postives = 162/184 (88.04%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 563
            K LRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  230 KALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN185836 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.325e-76
Identity = 130/184 (70.65%), Postives = 162/184 (88.04%), Query Frame = 3
Query:   12 KPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 563
            K LRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  230 KALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
The following BLAST results are available for this feature:
BLAST of CN185836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 438
Match NameE-valueIdentityDescription
EF1A_TETPY5.554e-8372.77Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_DICDI1.237e-8271.36Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A1_EUPCR1.787e-8170.65Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_RHYAM2.333e-8171.50Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]
EF1A_ENTHI9.803e-8069.85Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A1_XENLA6.354e-7968.66Elongation factor 1-alpha OS=Xenopus laevis PE=1 S... [more]
EF1A_PLAFK1.084e-7865.84Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A_SPOFR1.565e-7771.20Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]
EF1A_HELZE1.325e-7670.65Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI1.325e-7670.65Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185836 ID=CN185836; Name=CN185836; organism=Citrus sinensis; type=EST; length=759bp
GAGGCTCTTACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATT
GGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAA
GCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTA
AGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGAC
AATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGG
TTTTGTTGCTTCCAACTCGAAGGATGATCCAGCCAGGGAAGCTGCCAACT
TCACCTCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGA
TATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTC
TGAGCTCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGG
AGCCCAAGTTCTTGAAGAATGGAGATGCTGGAATGGTTAAGATGATTCCC
ACCAAGCCCATGGTTGTTGAAACCTTCTCTGACTACCCACCTCTTGGTCG
TTTTGCCGTTAGGGACATGCGTCAGACTGTTGCTGTTGGTGTGATTAAGA
ATGTTGAAAAGAAGGATCCAACAGGTGCCAAGGTCACCAAGTCTGCAGCC
AAGAAGAAGTGAGGAGTTTTTTGGGATCTATCTGCTATAGTTAGCTTTTA
TTTTCTCTGTTTATGCTATTTTTGTCGTGTTTTAGTTTGTTTTACGGGAC
TTCATTTTA
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