CN185835

Overview
NameCN185835
Unique NameCN185835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_THEON (Elongation factor 1-alpha OS=Thermococcus onnurineus (strain NA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.612e-19
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = -2
Query:  258 REAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKD 590
            R    F +Q+I++NHP  I  GY PVL  H   +AV+F +L+ K+D R+G  +E+ P+F+K GD+            +E   + P  GRFA+RDM QTVA G++ +++K +
Sbjct:  318 RPKDTFKAQIIVLNHPTAITIGYTPVLHAHTLQVAVRFEQLLAKLDPRTGNVVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_PYRCJ (Elongation factor 1-alpha OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.612e-19
Identity = 43/106 (40.57%), Postives = 67/106 (63.21%), Query Frame = -2
Query:  267 AANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVE 584
            A    ++++++ HP  IG GYAPV+  H + + V+  ELV+K+D R+G+ +E++P+F+K GD              E FSD+PP GRFA+RDM +T+A G I  V+
Sbjct:  332 AEEIVARIVVLWHPTAIGPGYAPVMHIHTATVPVQIVELVSKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_THEPD (Elongation factor 1-alpha OS=Thermofilum pendens (strain Hrk 5) GN=tuf PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.717e-19
Identity = 43/113 (38.05%), Postives = 68/113 (60.18%), Query Frame = -2
Query:  258 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKD 596
            P   A  FT ++ ++ HP  I  GY PVL  H + + V F EL+ K+D R+G   E++P+++K GD+            VE +S++PP GRFA+RD  +T+A GV+ +V+K +
Sbjct:  319 PPTVAEEFTGRIFVLYHPTAIAAGYTPVLHIHTATVPVTFEELLQKLDPRTGSVAEEKPQYIKQGDSAIVRFKPRKPVVVEKYSEFPPLGRFAIRDSGRTIAAGVVIDVKKAE 431          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_THECE (Elongation factor 1-alpha OS=Thermococcus celer GN=tuf PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.717e-19
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = -2
Query:  258 REAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKD 590
            R    F +Q+I++NHP  I  GY PVL  H   +AV+F +L+ K+D R+G  +E+ P+F+K GD+            +E   + P  GRFA+RDM QTVA G++ +++K +
Sbjct:  318 RPKDTFKAQIIVLNHPTAITVGYTPVLHAHTLQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAR (Elongation factor 1-alpha OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=tuf PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.717e-19
Identity = 41/101 (40.59%), Postives = 67/101 (66.34%), Query Frame = -2
Query:  267 SQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVE 569
            ++++++ HP  IG GYAPV+  H + + V+ +EL++K+D R+G+ +E++P+F+K GD              E FSD+PP GRFA+RDM +T+A G I  V+
Sbjct:  337 ARIVVLWHPTAIGPGYAPVMHIHTATVPVQITELISKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.046e-19
Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = -2
Query:  267 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVE 596
            P   A  FT++V I+ HP  I  GY PV+  H + +A +  E+  K+D R+GK +E+ P+F+K GDA            VE +SD+PP GRFA+RDM +T+ +GV+ +V+
Sbjct:  320 PPTVAEEFTARVFIIWHPTAITVGYTPVIHIHTASVASRIVEIKAKLDPRTGKVVEENPQFIKMGDAAIVRFKPIKPLVVEKYSDFPPLGRFAMRDMGKTIGIGVVVDVK 429          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_DESMO (Elongation factor 1-alpha OS=Desulfurococcus mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.051e-18
Identity = 43/110 (39.09%), Postives = 66/110 (60.00%), Query Frame = -2
Query:  267 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVE 596
            P   A  FT+++++M HP  I  GY PV+  H + +A + +E++ KID R+GKE+EK P FLK GD             VE +SD+   GRFA+RDM +T+ +G +  ++
Sbjct:  321 PPTVADEFTARIMVMWHPTAIAVGYTPVIHVHTASVACRITEIIAKIDPRTGKEIEKNPHFLKQGDIAIVKFKPIKPLVVEKYSDFQGLGRFAMRDMGKTIGIGQVLEIK 430          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.372e-18
Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = -2
Query:  261 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKK 596
            P   A  FT+Q++++ HP  I  GY PV  CH + IA  F EL  K+D RSG+  E+ P FLK+GDA            +E+  + P  GRFA+RDM  T+A G+   V+ K
Sbjct:  311 PPTVADEFTAQIVVLQHPSAITVGYTPVFHCHTAQIACTFVELRKKLDPRSGQTKEENPTFLKSGDAAIVQIKPSRPMVIESVKEIPQLGRFAIRDMGTTIAAGMCIAVQPK 422          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_METMJ (Elongation factor 1-alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=tuf PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.792e-18
Identity = 45/112 (40.18%), Postives = 62/112 (55.36%), Query Frame = -2
Query:  261 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKK 596
            P   A  F +QV++++HP  +  GY PV  CH + IA  F EL+ K+D R+G+  E+ P FLK GDA            +E   + P  GRFAVRDM  T+A GV  ++  K
Sbjct:  311 PPTVAEEFIAQVVVLHHPSALTVGYTPVFHCHTAQIACSFVELMKKLDPRTGQVKEENPTFLKTGDAAIVKIRPTQPMVIEKVKEIPQLGRFAVRDMGSTIAAGVCMDITPK 422          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.792e-18
Identity = 41/110 (37.27%), Postives = 68/110 (61.82%), Query Frame = -2
Query:  267 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVE 596
            P   A  FT+++ ++ HP  I  GY PV+  H + IA + +E+  K+D R+G+ +EK P+FLK GDA            +E +S++P  GRFA+RDM +T+ +G++ +V+
Sbjct:  321 PPTVAEEFTARIFVIWHPSAITVGYTPVIHAHTASIAARITEIQAKLDPRTGQVIEKNPQFLKAGDAAIVKFKPIKPMVIEKYSEFPQLGRFAMRDMGKTIGIGIVVDVK 430          
The following BLAST results are available for this feature:
BLAST of CN185835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_THEON3.612e-1938.74Elongation factor 1-alpha OS=Thermococcus onnurine... [more]
EF1A_PYRCJ3.612e-1940.57Elongation factor 1-alpha OS=Pyrobaculum calidifon... [more]
EF1A_THEPD4.717e-1938.05Elongation factor 1-alpha OS=Thermofilum pendens (... [more]
EF1A_THECE4.717e-1938.74Elongation factor 1-alpha OS=Thermococcus celer GN... [more]
EF1A_PYRAR4.717e-1940.59Elongation factor 1-alpha OS=Pyrobaculum arsenatic... [more]
EF1A_STAMF8.046e-1940.91Elongation factor 1-alpha OS=Staphylothermus marin... [more]
EF1A_DESMO1.051e-1839.09Elongation factor 1-alpha OS=Desulfurococcus mobil... [more]
EF1A_METPE1.372e-1841.07Elongation factor 1-alpha OS=Methanosphaerula palu... [more]
EF1A_METMJ1.792e-1840.18Elongation factor 1-alpha OS=Methanoculleus marisn... [more]
EF1A_HYPBU1.792e-1837.27Elongation factor 1-alpha OS=Hyperthermus butylicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185835 ID=CN185835; Name=CN185835; organism=Citrus sinensis; type=EST; length=597bp
AAATTTTTAAAATNGAGGAATAAGGGGTAATTTTGAAATAAAATGTTTGA
AATTAAAAAAATGGTTTATTAAATTAAAAAAAAAAAATTTTGATATAAAA
AAAAATTTAGAGAATTAAAATGAAGTCCCGTAAAACAAACTAAAACACGG
GAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTATAGCAAATAGATC
CCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGGGGACCTTGGCAC
CTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAACAGCAACAGTC
TGACGCATGTCCCTAACGGCAAAACGACCAAAAGGGGGGTAGTCAGAAAA
GGTTTCAACAACCATGGGGGGGGGGGGAATCATCTTAACCATTCCAGCAT
CTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGC
CTATCAATCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGG
GTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGT
TCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTGGCTGGA
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