CN185835

Overview
NameCN185835
Unique NameCN185835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_PYRFU (Elongation factor 1-alpha OS=Pyrococcus furiosus GN=tuf PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.896e-18
Identity = 39/109 (35.78%), Postives = 66/109 (60.55%), Query Frame = -2
Query:  264 REAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEK 590
            R    F +Q+I++NHP  I  GY+PVL  H + + V+F +L+ K+D ++G  +E+ P+F+K GDA            +E   + P  GRFA+RDM  T+A G++ ++++
Sbjct:  318 RTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQVPVRFEQLLAKLDPKTGNIVEENPQFIKTGDAAIVILRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQR 426          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_THEAC (Elongation factor 1-alpha OS=Thermoplasma acidophilum GN=tuf PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.517e-17
Identity = 42/105 (40.00%), Postives = 62/105 (59.05%), Query Frame = -2
Query:  261 FTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKK 575
            FT+Q+I++NHP  I  GY PV   H + +A +  E+V  ++ + G  L+++P F+KNGD             +E  S+ P  GRFAVRDM QTVA G   ++EK+
Sbjct:  320 FTAQIIVLNHPSVIAPGYKPVFHVHTAQVACRIDEIVKTLNPKDGTTLKEKPDFIKNGDVAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEKR 424          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.415e-17
Identity = 43/105 (40.95%), Postives = 58/105 (55.24%), Query Frame = -2
Query:  270 AANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNV 584
            A  F +Q++++ HPG I  GY PV  CH S +A  F EL  K+D  +G+  E+ P FLK G+A            +E     P  GRFA+RDM QTVA G+  +V
Sbjct:  305 AKEFDAQIVVLQHPGVITVGYTPVFHCHTSQVACTFLELTAKLDPATGQVAEENPDFLKTGNAAFVKVKPTKPMVIENAKKIPQMGRFAIRDMGQTVAAGLCIDV 409          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.766e-17
Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = -2
Query:  258 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKD 596
            P   A +FT+Q++++ HP  + +GY PV   H + IA  F+E+  K++  +G+ LE+ P FLK GDA            +E+  + P  GRFA+RDM  TVA G+   V  K+
Sbjct:  315 PPTVATDFTAQIVVLQHPSVLTDGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_METMP (Elongation factor 1-alpha OS=Methanococcus maripaludis GN=tuf PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.766e-17
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = -2
Query:  258 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKD 596
            P   AA+FT+Q++++ HP  +  GY PV   H + IA  F EL  K++  +G+ LE+ P FLK GDA            +E+  + P  GRFA+RDM  TVA G+   V  K+
Sbjct:  315 PPTVAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.766e-17
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = -2
Query:  258 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKD 596
            P   AA+FT+Q++++ HP  +  GY PV   H + IA  F EL  K++  +G+ LE+ P FLK GDA            +E+  + P  GRFA+RDM  TVA G+   V  K+
Sbjct:  315 PPTVAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_METM6 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=tuf PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.766e-17
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = -2
Query:  258 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKD 596
            P   AA+FT+Q++++ HP  +  GY PV   H + IA  F EL  K++  +G+ LE+ P FLK GDA            +E+  + P  GRFA+RDM  TVA G+   V  K+
Sbjct:  315 PPTVAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_METM5 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=tuf PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.766e-17
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = -2
Query:  258 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKD 596
            P   AA+FT+Q++++ HP  +  GY PV   H + IA  F EL  K++  +G+ LE+ P FLK GDA            +E+  + P  GRFA+RDM  TVA G+   V  K+
Sbjct:  315 PPTVAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_METBF (Elongation factor 1-alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=tuf PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.766e-17
Identity = 43/112 (38.39%), Postives = 61/112 (54.46%), Query Frame = -2
Query:  261 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKK 596
            P + A  F  Q++++ HP  I  GY PV   H S IA +  EL  K+D +SG+  E+ P FLK GDA            +E   + P  GRFA+RDM  T+A G+  +V++K
Sbjct:  311 PPKVADTFVGQIVVLQHPSAITAGYTPVFHAHTSQIACQLIELNKKLDPKSGQVKEENPTFLKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVKQK 422          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_UNCMA (Elongation factor 1-alpha OS=Uncultured methanogenic archaeon RC-I GN=tuf PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.531e-17
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = -2
Query:  261 AANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKK 584
            A  F +QV+++ HP  I  GY PV  CH + +A   ++++  +D ++G   E+ P F+K GDA            +E   + P  GRFA+RDM QTVA GV+ ++  K
Sbjct:  319 AVEFKAQVVVLQHPSAITAGYTPVFHCHTAQVACTLTQILATLDPKTGGVKEQNPPFIKTGDAAIVLIRPTRPLVIEKVKEIPQLGRFAIRDMGQTVAAGVVMDITPK 426          
The following BLAST results are available for this feature:
BLAST of CN185835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_PYRFU8.896e-1835.78Elongation factor 1-alpha OS=Pyrococcus furiosus G... [more]
EF1A_THEAC1.517e-1740.00Elongation factor 1-alpha OS=Thermoplasma acidophi... [more]
EF1A_METS34.415e-1740.95Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]
EF1A_METVA5.766e-1737.17Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_METMP5.766e-1738.94Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM75.766e-1738.94Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM65.766e-1738.94Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM55.766e-1738.94Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METBF5.766e-1738.39Elongation factor 1-alpha OS=Methanosarcina barker... [more]
EF1A_UNCMA7.531e-1736.11Elongation factor 1-alpha OS=Uncultured methanogen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185835 ID=CN185835; Name=CN185835; organism=Citrus sinensis; type=EST; length=597bp
AAATTTTTAAAATNGAGGAATAAGGGGTAATTTTGAAATAAAATGTTTGA
AATTAAAAAAATGGTTTATTAAATTAAAAAAAAAAAATTTTGATATAAAA
AAAAATTTAGAGAATTAAAATGAAGTCCCGTAAAACAAACTAAAACACGG
GAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTATAGCAAATAGATC
CCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGGGGACCTTGGCAC
CTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAACAGCAACAGTC
TGACGCATGTCCCTAACGGCAAAACGACCAAAAGGGGGGTAGTCAGAAAA
GGTTTCAACAACCATGGGGGGGGGGGGAATCATCTTAACCATTCCAGCAT
CTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGC
CTATCAATCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGG
GTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGT
TCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTGGCTGGA
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