CN185835

Overview
NameCN185835
Unique NameCN185835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_THEVO (Elongation factor 1-alpha OS=Thermoplasma volcanium GN=tuf PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 9.836e-17
Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = -2
Query:  261 FTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKK 575
            FT+Q++++NHP  I  GY PV   H + +A K  E+V  ++ + G  L+ +P F+K GD             +E  S+ P  GRFAVRDM QTVA G   ++EK+
Sbjct:  320 FTAQIVVLNHPSVIAPGYKPVFHVHTAQVACKIDEIVRTLNPKDGTTLKDKPDFIKTGDIAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEKR 424          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.285e-16
Identity = 40/111 (36.04%), Postives = 61/111 (54.95%), Query Frame = -2
Query:  264 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEK 596
            P      FT+Q++++NHP  I  GY PV   H + +A +  E+V  I+ + G  L+++P F+K GD             +E  S++P  GRFA+RDM  TVA G   ++EK
Sbjct:  313 PPTVVKGFTAQIVVLNHPSVIAAGYKPVFHVHTAQVACRIDEIVKTINPKDGTTLKEKPDFIKTGDIAIVKVVPDRALVIEKVSEFPQLGRFAIRDMGMTVAAGQCIDLEK 423          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.678e-16
Identity = 42/113 (37.17%), Postives = 63/113 (55.75%), Query Frame = -2
Query:  258 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKD 596
            P   A +FT+Q++++ HP  +  GY PV   H + IA  F+E+  K++  +G+ LE+ P FLK GDA            +E+  + P  GRFA+RDM  TVA G+   V  K+
Sbjct:  315 PPTVATDFTAQIVVLQHPSVLTVGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_AERPE (Elongation factor 1-alpha OS=Aeropyrum pernix GN=tuf PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.881e-16
Identity = 39/110 (35.45%), Postives = 65/110 (59.09%), Query Frame = -2
Query:  267 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVE 596
            P   A  F +++ ++ HP  I  GY PV+  H + ++ +  E+  K+D ++G+ +E+ P+FLK GDA            VE FS+ P  GRFA+RDM +TV +G++ +V+
Sbjct:  319 PPTVAEEFEARIFVIWHPSAITVGYTPVIHVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRTVGIGIVTDVK 428          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_METMA (Elongation factor 1-alpha OS=Methanosarcina mazei GN=tuf PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.375e-16
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = -2
Query:  261 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKK 596
            P + A  F  Q++++ HP  I  GY PV   H S IA +   L  K+D ++G+  E+ P FLK GDA            +E   + P  GRFA+RDM  T+A G+  +V++K
Sbjct:  311 PPKVADEFVGQIVVLQHPSAITAGYTPVFHAHTSQIACQLIALNKKLDPKTGQVKEENPTFLKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVKQK 422          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_METBU (Elongation factor 1-alpha OS=Methanococcoides burtonii (strain DSM 6242) GN=tuf PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.326e-16
Identity = 40/112 (35.71%), Postives = 59/112 (52.68%), Query Frame = -2
Query:  261 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKK 596
            P   A  FT Q++++ HP  I  GY PV  CH +  A     +  K+D +SG+  E+ P ++K GDA            +E  S+ P  GRFA+RDM  T+A G+  +V +K
Sbjct:  310 PPSVADEFTGQIVVLQHPSAITVGYTPVFHCHTAQTACTLMAINKKLDPKSGQVKEENPTYIKAGDAAIVTIKPTRPMCIEPVSEIPQLGRFAIRDMGMTIAAGMCMSVTQK 421          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_METAC (Elongation factor 1-alpha OS=Methanosarcina acetivorans GN=tuf PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.326e-16
Identity = 40/112 (35.71%), Postives = 60/112 (53.57%), Query Frame = -2
Query:  261 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKK 596
            P + A  F  Q++++ HP  I  GY PV   H S IA +   L  K+D ++G+  E+ P F+K GDA            +E   + P  GRFA+RDM  T+A G+  +V++K
Sbjct:  311 PPKVADEFVGQIVVLQHPSAITAGYTPVFHAHTSQIACQLISLDKKLDPKTGQVKEEHPTFIKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVKQK 422          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_METST (Elongation factor 1-alpha OS=Methanosphaera stadtmanae (strain DSM 3091) GN=tuf PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.087e-15
Identity = 40/105 (38.10%), Postives = 56/105 (53.33%), Query Frame = -2
Query:  282 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGV 596
            P   A  F +Q++++ HPG +  GY PV   H + +A  F  L  K+D  +G+  E+ P FLK GDA            +E   + P  GRFA+RDM QTVA G+
Sbjct:  301 PPSVAKEFKAQIVVLQHPGVMTVGYTPVFHAHTAQVACTFLSLDVKLDPATGQPKEENPDFLKTGDAALVTIKPTKPMVIENIKEIPHMGRFAIRDMGQTVAAGM 405          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_HALMA (Elongation factor 1-alpha OS=Haloarcula marismortui GN=tuf PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.087e-15
Identity = 40/112 (35.71%), Postives = 58/112 (51.79%), Query Frame = -2
Query:  261 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKK 596
            P   A  F +Q+++M HP  I  GY PV   H + +A     +  KID  SG+  E+ P F++NGDA            +E  S+ P  G FA+RDM QT+A G +  V ++
Sbjct:  310 PPSVAETFQAQIVVMQHPSVITEGYTPVFHAHTAQVACTVESIDKKIDPSSGEVAEENPDFIQNGDAAVVTVRPQKPLSIEPSSEIPELGSFAIRDMGQTIAAGKVLGVNER 421          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_CALMQ (Elongation factor 1-alpha OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=tuf PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 38/110 (34.55%), Postives = 63/110 (57.27%), Query Frame = -2
Query:  267 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVE 596
            P   A    +++ ++ HP  IG GY PV+  H + +  +  EL++++D  +G+ +E++P+F+K GD             VE FSD P  GRF++RDM +TVA G I  ++
Sbjct:  327 PPTVAEEIVARIAVLEHPTTIGVGYTPVMHVHTATVPTQIIELISRLDPATGQTVEQKPQFIKRGDVAMVRLKPLKPVVVERFSDLPALGRFSLRDMGRTVAAGQIIEIK 436          
The following BLAST results are available for this feature:
BLAST of CN185835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_THEVO9.836e-1739.05Elongation factor 1-alpha OS=Thermoplasma volcaniu... [more]
EF1A_PICTO1.285e-1636.04Elongation factor 1-alpha OS=Picrophilus torridus ... [more]
EF1A_METVS1.678e-1637.17Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_AERPE4.881e-1635.45Elongation factor 1-alpha OS=Aeropyrum pernix GN=t... [more]
EF1A_METMA6.375e-1636.61Elongation factor 1-alpha OS=Methanosarcina mazei ... [more]
EF1A_METBU8.326e-1635.71Elongation factor 1-alpha OS=Methanococcoides burt... [more]
EF1A_METAC8.326e-1635.71Elongation factor 1-alpha OS=Methanosarcina acetiv... [more]
EF1A_METST1.087e-1538.10Elongation factor 1-alpha OS=Methanosphaera stadtm... [more]
EF1A_HALMA1.087e-1535.71Elongation factor 1-alpha OS=Haloarcula marismortu... [more]
EF1A_CALMQ1.855e-1534.55Elongation factor 1-alpha OS=Caldivirga maquilinge... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185835 ID=CN185835; Name=CN185835; organism=Citrus sinensis; type=EST; length=597bp
AAATTTTTAAAATNGAGGAATAAGGGGTAATTTTGAAATAAAATGTTTGA
AATTAAAAAAATGGTTTATTAAATTAAAAAAAAAAAATTTTGATATAAAA
AAAAATTTAGAGAATTAAAATGAAGTCCCGTAAAACAAACTAAAACACGG
GAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTATAGCAAATAGATC
CCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGGGGACCTTGGCAC
CTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAACAGCAACAGTC
TGACGCATGTCCCTAACGGCAAAACGACCAAAAGGGGGGTAGTCAGAAAA
GGTTTCAACAACCATGGGGGGGGGGGGAATCATCTTAACCATTCCAGCAT
CTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGC
CTATCAATCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGG
GTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGT
TCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTGGCTGGA
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