CN185835

Overview
NameCN185835
Unique NameCN185835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.724e-37
Identity = 78/116 (67.24%), Postives = 91/116 (78.45%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            PA+EAA+FT+QVII+NHPGQIGNGYAPVLDCH  HIA KF+ + TKIDRRSGKELE EPKF+K+GDA            VE+F+DYPP G  +  DMRQTVAVGVIK+V KK+ TG
Sbjct:  321 PAKEAADFTAQVIILNHPGQIGNGYAPVLDCHTCHIACKFATIQTKIDRRSGKELEAEPKFIKSGDAAIVLMKPQKPMCVESFTDYPPLG-VSCGDMRQTVAVGVIKSVNKKENTG 435          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.252e-37
Identity = 76/113 (67.26%), Postives = 88/113 (77.88%), Query Frame = -2
Query:  258 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKD 596
            PA+EA  F +QVIIMNHPGQI NGY PVLDCH +HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG           VE+F+DY P GRFAVRDMRQTVAVGVIK+VEK D
Sbjct:  333 PAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSD 445          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A2_OSCTI (Elongation factor 1-alpha 2 OS=Oscheius tipulae GN=eft-2 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.252e-37
Identity = 75/116 (64.66%), Postives = 89/116 (76.72%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            PA+E+ +FT+QVI+MNHPGQIG GY PVLDCH +HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG           VE F+DY P GRFAVRDMRQTVAVGVIK V K D +G
Sbjct:  333 PAKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDPPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDDGSG 448          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.941e-37
Identity = 78/112 (69.64%), Postives = 86/112 (76.79%), Query Frame = -2
Query:  261 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKK 596
            P  EAANF +QVII+NHPGQI  GYAPVLDCH +HIA KF+EL  KIDRRSGK+LE  PK LK+GDA            VE+FS YPP GRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  333 PPMEAANFNAQVIILNHPGQISQGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKALKSGDAAIVEMVPGKPMCVESFSTYPPLGRFAVRDMRQTVAVGVIKSVEKK 444          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.941e-37
Identity = 75/116 (64.66%), Postives = 88/116 (75.86%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            PA+E+ NFT+QVI+MNHPGQI  GY PVLDCH +HIA KF+EL  K+DRR+GK  E  PKFLK+GDAG           VE+F+DY P GRFAVRDMRQTVAVGVIK+V K D +G
Sbjct:  334 PAKESKNFTAQVIVMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRTGKSTEASPKFLKSGDAGIVELIPTKPPCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVTKDDGSG 449          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_COCIM (Elongation factor 1-alpha OS=Coccidioides immitis GN=TEF PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 3.841e-37
Identity = 73/116 (62.93%), Postives = 88/116 (75.86%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            P +   +F +QVI++NHPGQ+G GYAPVLDCH +HIA KFSEL+ KIDRR+GK +E  PKF+K+GDA            VE F+DYPP GRFAVRDMRQTVAVGVIK+VEK + TG
Sbjct:  332 PPKGCDSFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELLEKIDRRTGKSVENNPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSEKTG 447          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A1_OSCTI (Elongation factor 1-alpha 1 OS=Oscheius tipulae GN=eft-1 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.841e-37
Identity = 75/116 (64.66%), Postives = 89/116 (76.72%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            PA+E+ +FT+QVI+MNHPGQIG GY PVLDCH +HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG           VE F+DY P GRFAVRDMRQTVAVGVIK V K D +G
Sbjct:  333 PAKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDDGSG 448          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_PUCGR (Elongation factor 1-alpha OS=Puccinia graminis GN=TEF PE=3 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 5.016e-37
Identity = 75/113 (66.37%), Postives = 87/113 (76.99%), Query Frame = -2
Query:  258 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKD 596
            P +EAA+F +QVI++NHPGQIGNGY PVLDCH +HIA KF  L  KIDRR+GK LE+ PKF+K+GDA            VE F+DYPP GRFAVRDMRQTVAVGVIK+VEK D
Sbjct:  330 PPKEAASFVAQVIVLNHPGQIGNGYCPVLDCHTAHIACKFDTLQQKIDRRTGKALEEAPKFVKSGDACLVKMVPSKAMCVEPFADYPPLGRFAVRDMRQTVAVGVIKSVEKTD 442          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A1_HORSE (Elongation factor 1-alpha 1 OS=Equus caballus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.552e-37
Identity = 78/112 (69.64%), Postives = 86/112 (76.79%), Query Frame = -2
Query:  261 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKK 596
            P  EAA FT+QVII+NHPGQI  GYAPV DCH +HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA            VE+FSDYPP GRFAVRDMRQTVAVGVIK V+KK
Sbjct:  333 PPMEAAGFTAQVIILNHPGQISAGYAPVPDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 8.557e-37
Identity = 75/116 (64.66%), Postives = 89/116 (76.72%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            P + AA+F +QVII+NHPGQI  GYAPVLDCH +HIA KF+EL+ KIDRRSGK+LE  PKF+K+GDA            VE FS+YPP GRFAVRDMRQTVAVGVIK V+ K+ +G
Sbjct:  333 PPKAAASFNAQVIILNHPGQINQGYAPVLDCHTAHIACKFNELIEKIDRRSGKKLEDNPKFVKSGDAAIVKLIPQKPMVVEPFSNYPPLGRFAVRDMRQTVAVGVIKAVDTKEISG 448          
The following BLAST results are available for this feature:
BLAST of CN185835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_EUGGR1.724e-3767.24Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A_CAEEL2.252e-3767.26Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]
EF1A2_OSCTI2.252e-3764.66Elongation factor 1-alpha 2 OS=Oscheius tipulae GN... [more]
EF1A_DANRE2.941e-3769.64Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]
EF1A3_OSCTI2.941e-3764.66Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]
EF1A_COCIM3.841e-3762.93Elongation factor 1-alpha OS=Coccidioides immitis ... [more]
EF1A1_OSCTI3.841e-3764.66Elongation factor 1-alpha 1 OS=Oscheius tipulae GN... [more]
EF1A_PUCGR5.016e-3766.37Elongation factor 1-alpha OS=Puccinia graminis GN=... [more]
EF1A1_HORSE6.552e-3769.64Elongation factor 1-alpha 1 OS=Equus caballus GN=E... [more]
EF1A_ORYLA8.557e-3764.66Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185835 ID=CN185835; Name=CN185835; organism=Citrus sinensis; type=EST; length=597bp
AAATTTTTAAAATNGAGGAATAAGGGGTAATTTTGAAATAAAATGTTTGA
AATTAAAAAAATGGTTTATTAAATTAAAAAAAAAAAATTTTGATATAAAA
AAAAATTTAGAGAATTAAAATGAAGTCCCGTAAAACAAACTAAAACACGG
GAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTATAGCAAATAGATC
CCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGGGGACCTTGGCAC
CTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAACAGCAACAGTC
TGACGCATGTCCCTAACGGCAAAACGACCAAAAGGGGGGTAGTCAGAAAA
GGTTTCAACAACCATGGGGGGGGGGGGAATCATCTTAACCATTCCAGCAT
CTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGC
CTATCAATCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGG
GTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGT
TCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTGGCTGGA
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