CN185835

Overview
NameCN185835
Unique NameCN185835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_PODAN (Elongation factor 1-alpha OS=Podospora anserina GN=TEF PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.244e-36
Identity = 72/111 (64.86%), Postives = 86/111 (77.48%), Query Frame = -2
Query:  264 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEK 596
            P   AA+F +QVI++NHPGQ+G GYAPVLDCH +HIA KFSEL+ KIDRR+GK +E+ PKF+K+GDA            VE F++YPP GRFAVRDMRQTVAVGVIK VEK
Sbjct:  332 PPMGAASFDAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELLQKIDRRTGKAVEESPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVEK 442          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 7.244e-36
Identity = 72/111 (64.86%), Postives = 86/111 (77.48%), Query Frame = -2
Query:  264 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEK 596
            P   AA+FT+QVI++NHPGQ+G GYAPVLDCH +HIA KF+EL+ KIDRR+GK +E  PKF+K+GDA            VE F+DYPP GRFAVRDMRQTVAVGVIK V+K
Sbjct:  332 PPAGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVEASPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_CANAL (Elongation factor 1-alpha OS=Candida albicans GN=TEF1 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.460e-36
Identity = 72/116 (62.07%), Postives = 86/116 (74.14%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            P +   +F +QVI++NHPGQI  GY+PVLDCH +HIA KF  LV KIDRR+GK+LE+ PKF+K+GDA            VE F+DYPP GRFAVRDMRQTVAVGVIK+VEK D  G
Sbjct:  331 PPKGCDSFNAQVIVLNHPGQISAGYSPVLDCHTAHIACKFDTLVEKIDRRTGKKLEENPKFVKSGDAAIVKMVPTKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSDKAG 446          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.460e-36
Identity = 73/116 (62.93%), Postives = 87/116 (75.00%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            P +  A+F +QVII+NHPG+I  GYAPVLDCH +HIA KFSEL+ K+DRRSGK+LE  PK +K+GDA            VE F+ YPP GRFAVRDMRQTVAVGVIK+VEKK+  G
Sbjct:  325 PPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGKKLEDSPKMIKSGDAAMVKMVASKPMCVEAFTSYPPLGRFAVRDMRQTVAVGVIKSVEKKEVEG 440          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.236e-35
Identity = 72/111 (64.86%), Postives = 86/111 (77.48%), Query Frame = -2
Query:  264 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEK 596
            P   AA+FT+QVI++NHPGQ+G GYAPVLDCH +HIA KF+EL+ KIDRR+GK +E  PKF+K+GDA            VE F+DYPP GRFAVRDMRQTVAVGVIK V+K
Sbjct:  332 PPVGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVETSPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_PORYE (Elongation factor 1-alpha OS=Porphyra yezoensis PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.236e-35
Identity = 73/116 (62.93%), Postives = 87/116 (75.00%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            P +  A+F +QVII+NHPG+I  GYAPVLDCH +HIA KFSEL+ K+DRRSGK+LE  PK +K+GDA            VE F+ YPP GRFAVRDMRQTVAVGVIK+VEKK+  G
Sbjct:  325 PPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGKKLEDTPKMIKSGDAAMVKMVASKPMCVEAFTQYPPLGRFAVRDMRQTVAVGVIKSVEKKEVEG 440          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_ASPOR (Elongation factor 1-alpha OS=Aspergillus oryzae GN=tef1 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.236e-35
Identity = 70/111 (63.06%), Postives = 87/111 (78.38%), Query Frame = -2
Query:  264 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEK 596
            P     +F +QVI++NHPGQ+GNGYAPVLDCH +HIA KF+EL+ KIDRR+GK +E +PKF+K+GDA            VE+F+D+PP GRFAVRDMRQTVAVGVIK+VEK
Sbjct:  332 PPAGCDSFNAQVIVLNHPGQVGNGYAPVLDCHTAHIACKFAELLEKIDRRTGKSVEDKPKFIKSGDAAIVKMIPSKPMCVESFTDFPPLGRFAVRDMRQTVAVGVIKSVEK 442          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_PICGU (Elongation factor 1-alpha OS=Pichia guilliermondii GN=TEF1 PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.614e-35
Identity = 71/116 (61.21%), Postives = 86/116 (74.14%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            P +   +FT+QVI++NHPGQI  GY+PVLDCH +HIA KF  L+ KIDRR+GK++E  PKF+K+GDA            VE F+DYPP GRFAVRDMRQTVAVGVIK+VEK D  G
Sbjct:  331 PPKGCDSFTAQVIVLNHPGQISAGYSPVLDCHTAHIACKFDTLLEKIDRRTGKKMEDNPKFVKSGDASIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSDKAG 446          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.614e-35
Identity = 71/116 (61.21%), Postives = 86/116 (74.14%), Query Frame = -2
Query:  249 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKKDPTG 596
            P + AA+FT+QVI++NHPGQI NGY PVLDCH +HIA KF+E+  K+DRRSGK  E+ PKF+K+GDA            VE F ++PP GRFAVRDMRQTVAVGVIK V  KD +G
Sbjct:  333 PPKGAADFTAQVIVLNHPGQIANGYTPVLDCHTAHIACKFAEIKEKVDRRSGKTTEENPKFIKSGDAAIVNLVPSKPLCVEAFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKDASG 448          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_PODCU (Elongation factor 1-alpha OS=Podospora curvicolla GN=TEF PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.108e-35
Identity = 71/111 (63.96%), Postives = 86/111 (77.48%), Query Frame = -2
Query:  264 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEK 596
            P   AA+F +QVI++NHPGQ+G GYAPVLDCH +HIA KF+EL+ KIDRR+GK +E+ PKF+K+GDA            VE F++YPP GRFAVRDMRQTVAVGVIK VEK
Sbjct:  332 PPLGAASFDAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLQKIDRRTGKAVEESPKFIKSGDAAIVKMIPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVEK 442          
The following BLAST results are available for this feature:
BLAST of CN185835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_PODAN7.244e-3664.86Elongation factor 1-alpha OS=Podospora anserina GN... [more]
EF1A_NEUCR7.244e-3664.86Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A_CANAL9.460e-3662.07Elongation factor 1-alpha OS=Candida albicans GN=T... [more]
EF1AC_PORPU9.460e-3662.93Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]
EF1A_SORMA1.236e-3564.86Elongation factor 1-alpha OS=Sordaria macrospora G... [more]
EF1A_PORYE1.236e-3562.93Elongation factor 1-alpha OS=Porphyra yezoensis PE... [more]
EF1A_ASPOR1.236e-3563.06Elongation factor 1-alpha OS=Aspergillus oryzae GN... [more]
EF1A_PICGU1.614e-3561.21Elongation factor 1-alpha OS=Pichia guilliermondii... [more]
EF1A1_DROME1.614e-3561.21Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]
EF1A_PODCU2.108e-3563.96Elongation factor 1-alpha OS=Podospora curvicolla ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001P03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185835 ID=CN185835; Name=CN185835; organism=Citrus sinensis; type=EST; length=597bp
AAATTTTTAAAATNGAGGAATAAGGGGTAATTTTGAAATAAAATGTTTGA
AATTAAAAAAATGGTTTATTAAATTAAAAAAAAAAAATTTTGATATAAAA
AAAAATTTAGAGAATTAAAATGAAGTCCCGTAAAACAAACTAAAACACGG
GAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTATAGCAAATAGATC
CCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGGGGACCTTGGCAC
CTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAACAGCAACAGTC
TGACGCATGTCCCTAACGGCAAAACGACCAAAAGGGGGGTAGTCAGAAAA
GGTTTCAACAACCATGGGGGGGGGGGGAATCATCTTAACCATTCCAGCAT
CTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGC
CTATCAATCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGG
GTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGT
TCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTGGCTGGA
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