CN185835

Overview
NameCN185835
Unique NameCN185835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:189..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.875e-26
Identity = 53/95 (55.79%), Postives = 68/95 (71.58%), Query Frame = -2
Query:  312 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVR 596
            P + AA+FT+QVI++NHPGQI NGY PVLDCH +HIA KF+E+  K+DRR+GK  E  PK +K+GDA            VE+F ++PP GRFAVR
Sbjct:  319 PPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.875e-26
Identity = 53/95 (55.79%), Postives = 68/95 (71.58%), Query Frame = -2
Query:  312 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVR 596
            P + AA+FT+QVI++NHPGQI NGY PVLDCH +HIA KF+E+  K+DRR+GK  E  PK +K+GDA            VE+F ++PP GRFAVR
Sbjct:  319 PPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_HELGL (Elongation factor 1-alpha (Fragment) OS=Helicoverpa gelotopoeon PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.875e-26
Identity = 53/95 (55.79%), Postives = 68/95 (71.58%), Query Frame = -2
Query:  312 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVR 596
            P + AA+FT+QVI++NHPGQI NGY PVLDCH +HIA KF+E+  K+DRR+GK  E  PK +K+GDA            VE+F ++PP GRFAVR
Sbjct:  319 PPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_HELDI (Elongation factor 1-alpha (Fragment) OS=Heliocheilus discalis PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.875e-26
Identity = 53/95 (55.79%), Postives = 68/95 (71.58%), Query Frame = -2
Query:  312 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVR 596
            P + AA+FT+QVI++NHPGQI NGY PVLDCH +HIA KF+E+  K+DRR+GK  E  PK +K+GDA            VE+F ++PP GRFAVR
Sbjct:  319 PPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_HELAM (Elongation factor 1-alpha (Fragment) OS=Helicoverpa armigera PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.875e-26
Identity = 53/95 (55.79%), Postives = 68/95 (71.58%), Query Frame = -2
Query:  312 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVR 596
            P + AA+FT+QVI++NHPGQI NGY PVLDCH +HIA KF+E+  K+DRR+GK  E  PK +K+GDA            VE+F ++PP GRFAVR
Sbjct:  319 PPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_HELAL (Elongation factor 1-alpha (Fragment) OS=Heliocheilus albipunctella PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.875e-26
Identity = 53/95 (55.79%), Postives = 68/95 (71.58%), Query Frame = -2
Query:  312 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVR 596
            P + AA+FT+QVI++NHPGQI NGY PVLDCH +HIA KF+E+  K+DRR+GK  E  PK +K+GDA            VE+F ++PP GRFAVR
Sbjct:  319 PPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_ANIIF (Elongation factor 1-alpha (Fragment) OS=Anicla infecta PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.875e-26
Identity = 53/95 (55.79%), Postives = 68/95 (71.58%), Query Frame = -2
Query:  312 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVR 596
            P + AA+FT+QVI++NHPGQI NGY PVLDCH +HIA KF+E+  K+DRR+GK  E  PK +K+GDA            VE+F ++PP GRFAVR
Sbjct:  319 PPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_ADIBE (Elongation factor 1-alpha (Fragment) OS=Adisura bella PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.875e-26
Identity = 53/95 (55.79%), Postives = 68/95 (71.58%), Query Frame = -2
Query:  312 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVR 596
            P + AA+FT+QVI++NHPGQI NGY PVLDCH +HIA KF+E+  K+DRR+GK  E  PK +K+GDA            VE+F ++PP GRFAVR
Sbjct:  319 PPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_SULSO (Elongation factor 1-alpha OS=Sulfolobus solfataricus GN=tuf PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.015e-21
Identity = 48/110 (43.64%), Postives = 72/110 (65.45%), Query Frame = -2
Query:  267 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVE 596
            P   A  FT+++I++ HP  + NGY PV+  H + +A + SELV+K+D R+G+E EK P+FLK GD             VE ++++PP GRFA+RDM +TV VG+I +V+
Sbjct:  319 PPTVADEFTARIIVVWHPTALANGYTPVIHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVK 428          
BLAST of CN185835 vs. ExPASy Swiss-Prot
Match: EF1A_METHJ (Elongation factor 1-alpha OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=tuf PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.262e-21
Identity = 49/112 (43.75%), Postives = 66/112 (58.93%), Query Frame = -2
Query:  261 PAREAANFTSQVIIMNHPGQIGNGYAPVLDCHPSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGXXXXXXXXXXXVETFSDYPPFGRFAVRDMRQTVAVGVIKNVEKK 596
            P   A  FT+Q++++ HP  I  GY PV  CH +  A  F+ELV K+D R+G+ LE+ P FLK GDA            +E   ++P  GRFA+RDM QT+A G+  NV KK
Sbjct:  311 PPAVAEEFTAQIVVLQHPSAITVGYTPVFHCHTAQTACTFTELVKKLDPRTGQTLEENPTFLKAGDAAIIKCHPTKPLCLENAKEFPQLGRFAIRDMGQTIAAGMCINVVKK 422          
The following BLAST results are available for this feature:
BLAST of CN185835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_HELZE8.875e-2655.79Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI8.875e-2655.79Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELGL8.875e-2655.79Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELDI8.875e-2655.79Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_HELAM8.875e-2655.79Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELAL8.875e-2655.79Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_ANIIF8.875e-2655.79Elongation factor 1-alpha (Fragment) OS=Anicla inf... [more]
EF1A_ADIBE8.875e-2655.79Elongation factor 1-alpha (Fragment) OS=Adisura be... [more]
EF1A_SULSO1.015e-2143.64Elongation factor 1-alpha OS=Sulfolobus solfataric... [more]
EF1A_METHJ2.262e-2143.75Elongation factor 1-alpha OS=Methanospirillum hung... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001P03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185835 ID=CN185835; Name=CN185835; organism=Citrus sinensis; type=EST; length=597bp
AAATTTTTAAAATNGAGGAATAAGGGGTAATTTTGAAATAAAATGTTTGA
AATTAAAAAAATGGTTTATTAAATTAAAAAAAAAAAATTTTGATATAAAA
AAAAATTTAGAGAATTAAAATGAAGTCCCGTAAAACAAACTAAAACACGG
GAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTATAGCAAATAGATC
CCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGGGGACCTTGGCAC
CTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCAACAGCAACAGTC
TGACGCATGTCCCTAACGGCAAAACGACCAAAAGGGGGGTAGTCAGAAAA
GGTTTCAACAACCATGGGGGGGGGGGGAATCATCTTAACCATTCCAGCAT
CTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGC
CTATCAATCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGG
GTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGT
TCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTGGCTGGA
back to top